Wall clock time and date at job start Sun Mar 29 2020 22:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00251 * 2 1 4 4 H 1.48490 * 109.47296 * 240.00705 * 3 2 1 5 5 H 1.48504 * 109.46689 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.47098 * 120.00132 * 3 2 1 7 7 C 1.37876 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00270 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99995 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47433 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00360 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.43303 * 324.90005 * 11 10 9 13 13 C 1.53028 * 109.43161 * 204.99743 * 11 10 9 14 14 C 1.53369 * 109.75327 * 168.27231 * 13 11 10 15 15 C 1.50952 * 108.24354 * 50.64305 * 14 13 11 16 16 N 1.30059 * 128.33725 * 163.17731 * 15 14 13 17 17 N 1.40319 * 108.14373 * 180.20541 * 16 15 14 18 18 H 0.96997 * 126.00021 * 179.97438 * 17 16 15 19 19 C 1.35191 * 107.99211 * 359.97438 * 17 16 15 20 20 C 1.34578 * 107.62036 * 359.96417 * 19 17 16 21 21 C 1.50878 * 128.32864 * 180.11864 * 20 19 17 22 22 H 0.96996 * 120.00066 * 359.97438 * 1 2 3 23 23 H 1.08991 * 109.47525 * 59.99389 * 9 7 2 24 24 H 1.09007 * 109.46922 * 299.99249 * 9 7 2 25 25 H 1.00903 * 110.99804 * 303.95571 * 10 9 7 26 26 H 1.09004 * 109.41682 * 48.18850 * 13 11 10 27 27 H 1.08998 * 109.42676 * 288.36405 * 13 11 10 28 28 H 1.09002 * 109.71564 * 170.34494 * 14 13 11 29 29 H 1.09001 * 109.71677 * 290.94502 * 14 13 11 30 30 H 1.08003 * 126.19295 * 179.97438 * 19 17 16 31 31 H 1.08998 * 109.71838 * 43.67567 * 21 20 19 32 32 H 1.08995 * 109.72084 * 283.02006 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2056 -3.6157 -0.0027 11 6 1.5053 -4.9070 -0.0032 12 1 0.5934 -4.8253 0.5881 13 6 2.4126 -5.9784 0.6056 14 6 1.6010 -7.2508 0.8789 15 6 0.8473 -7.6098 -0.3787 16 7 0.2892 -8.7427 -0.6891 17 7 -0.2906 -8.6105 -1.9601 18 1 -0.7740 -9.3005 -2.4408 19 6 -0.0570 -7.3526 -2.3968 20 6 0.6419 -6.7128 -1.4411 21 6 1.1450 -5.2904 -1.4437 22 1 -0.4850 0.8400 0.0004 23 1 0.6247 -2.5563 -0.8918 24 1 0.6241 -2.5575 0.8881 25 1 2.8405 -3.5479 -0.7840 26 1 2.8329 -5.6086 1.5409 27 1 3.2211 -6.2063 -0.0890 28 1 2.2735 -8.0648 1.1497 29 1 0.8966 -7.0703 1.6909 30 1 -0.3740 -6.9364 -3.3416 31 1 0.3666 -4.6256 -1.8182 32 1 2.0298 -5.2144 -2.0757 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591756076.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:27 Heat of formation + Delta-G solvation = 59.665309 kcal Electronic energy + Delta-G solvation = -14636.878477 eV Core-core repulsion = 12212.123738 eV Total energy + Delta-G solvation = -2424.754738 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.30100 -37.18539 -33.87389 -32.35459 -31.23846 -30.07080 -27.81063 -25.62414 -23.88955 -21.64283 -20.90222 -20.60602 -18.68856 -17.51715 -16.32256 -15.12468 -14.80780 -14.65899 -13.90466 -13.69269 -13.53933 -13.10644 -12.60502 -12.34555 -12.11458 -11.61559 -11.45500 -11.35039 -10.84661 -10.73093 -10.56987 -10.30938 -10.11160 -9.76820 -9.28159 -9.12497 -8.45999 -8.26604 -7.22389 -6.00014 -4.01796 1.98055 2.87449 2.92483 3.35739 3.39581 3.42765 4.45389 4.65432 4.86544 5.10003 5.25535 5.35812 5.41568 5.62276 5.73711 5.80468 5.86234 5.95293 6.09985 6.16623 6.28901 6.50280 6.62581 6.71165 6.82104 7.32707 7.35417 7.49018 7.77296 7.82622 8.17565 8.45477 8.67316 9.07810 9.63029 11.10984 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.056081 B = 0.005633 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.157202 B = 4969.079495 C = 5242.199452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.194 3.806 10 N -0.685 5.685 11 C 0.090 3.910 12 H 0.072 0.928 13 C -0.103 4.103 14 C -0.038 4.038 15 C 0.086 3.914 16 N -0.297 5.297 17 N -0.492 5.492 18 H 0.435 0.565 19 C 0.052 3.948 20 C -0.220 4.220 21 C -0.071 4.071 22 H 0.261 0.739 23 H -0.013 1.013 24 H 0.027 0.973 25 H 0.329 0.671 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.174 0.826 31 H 0.070 0.930 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.694 -14.348 -3.949 14.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.313 5.313 11 C -0.021 4.021 12 H 0.090 0.910 13 C -0.142 4.142 14 C -0.078 4.078 15 C -0.082 4.082 16 N -0.120 5.120 17 N -0.200 5.200 18 H 0.278 0.722 19 C -0.093 4.093 20 C -0.232 4.232 21 C -0.111 4.111 22 H 0.071 0.929 23 H 0.005 0.995 24 H 0.045 0.955 25 H 0.146 0.854 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.191 0.809 31 H 0.089 0.911 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.380 -15.351 -2.883 15.624 hybrid contribution -0.258 1.340 -1.690 2.172 sum 0.123 -14.011 -4.572 14.739 Atomic orbital electron populations 1.69952 1.06079 1.26831 1.50966 1.24982 0.94847 0.99310 0.95403 0.86559 0.79425 0.82757 0.78634 1.20304 1.21410 1.20165 1.21178 0.93492 0.90348 1.50274 0.92033 1.19571 0.90621 0.87304 0.95749 1.60765 1.20780 1.01005 1.48785 1.21539 0.96621 0.90570 0.93415 0.90962 1.21570 0.97684 0.92919 1.02023 1.20182 0.97622 0.98330 0.91670 1.22485 0.97544 0.90675 0.97537 1.76914 1.16443 1.22528 0.96109 1.46261 1.47211 1.11480 1.15073 0.72155 1.22078 1.00740 0.86200 1.00320 1.20258 1.08643 0.98820 0.95523 1.20841 1.00411 0.90256 0.99567 0.92912 0.99491 0.95508 0.85435 0.90127 0.92178 0.90284 0.89855 0.80930 0.91122 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.48 9.32 -34.44 -0.32 -14.81 16 8 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 9 C 0.19 5.03 5.24 -4.98 -0.03 5.00 16 10 N -0.68 -14.32 6.23 -107.79 -0.67 -15.00 16 11 C 0.09 1.57 2.41 -67.52 -0.16 1.41 16 12 H 0.07 1.38 7.76 -51.93 -0.40 0.98 16 13 C -0.10 -1.50 5.47 -26.53 -0.15 -1.65 16 14 C -0.04 -0.51 6.31 -27.57 -0.17 -0.69 16 15 C 0.09 1.30 7.11 -82.35 -0.59 0.72 16 16 N -0.30 -4.44 12.68 33.75 0.43 -4.01 16 17 N -0.49 -5.82 7.37 30.35 0.22 -5.60 16 18 H 0.44 3.50 8.96 -182.43 -1.64 1.86 16 19 C 0.05 0.63 11.95 -17.37 -0.21 0.42 16 20 C -0.22 -3.28 5.89 -104.96 -0.62 -3.89 16 21 C -0.07 -1.13 5.54 -27.61 -0.15 -1.28 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H -0.01 -0.35 7.64 -51.93 -0.40 -0.74 16 24 H 0.03 0.76 8.05 -51.93 -0.42 0.34 16 25 H 0.33 6.56 8.36 -39.29 -0.33 6.23 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.17 1.54 8.06 -52.48 -0.42 1.11 16 31 H 0.07 1.21 7.73 -51.93 -0.40 0.81 16 32 H 0.07 1.02 7.96 -51.93 -0.41 0.61 16 LS Contribution 268.27 15.07 4.04 4.04 Total: -1.00 -31.82 268.27 -8.40 -40.22 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.65 Total: 3.10 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -2.49 Total: -13.27 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: 0.72 Total: -50.70 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.82 -8.40 -40.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591756076.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.887 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds