Wall clock time and date at job start Sun Mar 29 2020 22:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00251 * 2 1 4 4 H 1.48490 * 109.47296 * 240.00705 * 3 2 1 5 5 H 1.48504 * 109.46689 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.47098 * 120.00132 * 3 2 1 7 7 C 1.37876 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00270 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99995 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47433 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00360 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.43303 * 324.90005 * 11 10 9 13 13 C 1.53028 * 109.43161 * 204.99743 * 11 10 9 14 14 C 1.53369 * 109.75327 * 168.27231 * 13 11 10 15 15 C 1.50952 * 108.24354 * 50.64305 * 14 13 11 16 16 N 1.30059 * 128.33725 * 163.17731 * 15 14 13 17 17 N 1.40319 * 108.14373 * 180.20541 * 16 15 14 18 18 H 0.96997 * 126.00021 * 179.97438 * 17 16 15 19 19 C 1.35191 * 107.99211 * 359.97438 * 17 16 15 20 20 C 1.34578 * 107.62036 * 359.96417 * 19 17 16 21 21 C 1.50878 * 128.32864 * 180.11864 * 20 19 17 22 22 H 0.96996 * 120.00066 * 359.97438 * 1 2 3 23 23 H 1.08991 * 109.47525 * 59.99389 * 9 7 2 24 24 H 1.09007 * 109.46922 * 299.99249 * 9 7 2 25 25 H 1.00903 * 110.99804 * 303.95571 * 10 9 7 26 26 H 1.09004 * 109.41682 * 48.18850 * 13 11 10 27 27 H 1.08998 * 109.42676 * 288.36405 * 13 11 10 28 28 H 1.09002 * 109.71564 * 170.34494 * 14 13 11 29 29 H 1.09001 * 109.71677 * 290.94502 * 14 13 11 30 30 H 1.08003 * 126.19295 * 179.97438 * 19 17 16 31 31 H 1.08998 * 109.71838 * 43.67567 * 21 20 19 32 32 H 1.08995 * 109.72084 * 283.02006 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2056 -3.6157 -0.0027 11 6 1.5053 -4.9070 -0.0032 12 1 0.5934 -4.8253 0.5881 13 6 2.4126 -5.9784 0.6056 14 6 1.6010 -7.2508 0.8789 15 6 0.8473 -7.6098 -0.3787 16 7 0.2892 -8.7427 -0.6891 17 7 -0.2906 -8.6105 -1.9601 18 1 -0.7740 -9.3005 -2.4408 19 6 -0.0570 -7.3526 -2.3968 20 6 0.6419 -6.7128 -1.4411 21 6 1.1450 -5.2904 -1.4437 22 1 -0.4850 0.8400 0.0004 23 1 0.6247 -2.5563 -0.8918 24 1 0.6241 -2.5575 0.8881 25 1 2.8405 -3.5479 -0.7840 26 1 2.8329 -5.6086 1.5409 27 1 3.2211 -6.2063 -0.0890 28 1 2.2735 -8.0648 1.1497 29 1 0.8966 -7.0703 1.6909 30 1 -0.3740 -6.9364 -3.3416 31 1 0.3666 -4.6256 -1.8182 32 1 2.0298 -5.2144 -2.0757 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591756076.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:27 Heat of formation + Delta-G solvation = 36.889881 kcal Electronic energy + Delta-G solvation = -14637.866093 eV Core-core repulsion = 12212.123738 eV Total energy + Delta-G solvation = -2425.742355 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.36747 -38.61087 -35.59730 -34.09036 -32.57472 -31.24407 -29.37193 -27.33630 -25.20874 -23.53027 -22.16264 -21.83062 -19.87843 -18.57702 -18.39010 -16.71416 -16.19551 -16.15234 -15.41284 -15.04750 -15.00052 -14.34836 -14.09247 -13.77542 -13.63067 -13.30234 -12.99800 -12.77401 -12.60396 -12.40661 -12.00706 -11.97694 -11.58580 -11.34659 -11.07923 -10.61785 -10.32346 -9.36367 -8.99723 -8.17887 -6.28802 0.95769 1.44450 1.48048 1.55820 1.76078 2.01551 2.43854 3.15463 3.51773 3.62560 3.92120 3.99708 4.34225 4.38346 4.53152 4.58460 4.67574 4.77662 4.87068 4.99940 5.04696 5.19715 5.23729 5.34379 5.40591 5.46748 5.64881 5.72738 6.08851 6.48613 6.53827 6.73642 6.80747 6.97814 7.42272 8.93393 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.056081 B = 0.005633 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.157202 B = 4969.079495 C = 5242.199452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.066 0.934 9 C 0.211 3.789 10 N -0.682 5.682 11 C 0.088 3.912 12 H 0.048 0.952 13 C -0.091 4.091 14 C -0.034 4.034 15 C 0.073 3.927 16 N -0.321 5.321 17 N -0.477 5.477 18 H 0.452 0.548 19 C 0.072 3.928 20 C -0.256 4.256 21 C -0.058 4.058 22 H 0.264 0.736 23 H -0.035 1.035 24 H -0.006 1.006 25 H 0.336 0.664 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.209 0.791 31 H 0.050 0.950 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.606 -14.894 -4.731 15.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.083 3.917 10 N -0.311 5.311 11 C -0.022 4.022 12 H 0.066 0.934 13 C -0.130 4.130 14 C -0.074 4.074 15 C -0.095 4.095 16 N -0.144 5.144 17 N -0.187 5.187 18 H 0.299 0.701 19 C -0.075 4.075 20 C -0.268 4.268 21 C -0.098 4.098 22 H 0.073 0.927 23 H -0.018 1.018 24 H 0.012 0.988 25 H 0.154 0.846 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.225 0.775 31 H 0.069 0.931 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.299 -15.948 -3.670 16.417 hybrid contribution -0.606 1.427 -1.485 2.147 sum 0.693 -14.521 -5.155 15.424 Atomic orbital electron populations 1.70090 1.07843 1.27951 1.51715 1.25940 0.95730 1.03340 0.94675 0.85398 0.78089 0.77710 0.79169 1.19005 1.20998 1.19390 1.21564 0.93882 0.91495 1.50370 0.91622 1.19183 0.90638 0.88817 0.93066 1.60656 1.20045 1.01162 1.49245 1.21595 0.96182 0.89758 0.94669 0.93386 1.21436 0.97340 0.92385 1.01846 1.20174 0.97779 0.98091 0.91341 1.22691 0.97907 0.90835 0.98035 1.76856 1.17288 1.22657 0.97586 1.46303 1.46286 1.11924 1.14233 0.70074 1.22554 0.98456 0.85764 1.00707 1.20256 1.11158 0.98313 0.97032 1.20579 1.00126 0.91010 0.98093 0.92725 1.01769 0.98786 0.84605 0.90220 0.91180 0.88187 0.89757 0.77453 0.93140 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.83 13.29 21.45 0.28 -56.55 16 2 C 0.00 0.06 5.46 84.65 0.46 0.53 16 3 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.53 -30.48 9.32 25.60 0.24 -30.24 16 8 H 0.07 3.61 7.81 -2.91 -0.02 3.58 16 9 C 0.21 11.31 5.24 85.56 0.45 11.76 16 10 N -0.68 -29.01 6.23 -494.93 -3.08 -32.09 16 11 C 0.09 3.14 2.41 45.04 0.11 3.25 16 12 H 0.05 1.92 7.76 -2.39 -0.02 1.91 16 13 C -0.09 -2.60 5.47 30.73 0.17 -2.43 16 14 C -0.03 -0.88 6.31 30.05 0.19 -0.69 16 15 C 0.07 2.12 7.11 43.47 0.31 2.43 16 16 N -0.32 -9.02 12.68 -47.12 -0.60 -9.62 16 17 N -0.48 -10.15 7.37 -57.88 -0.43 -10.57 16 18 H 0.45 6.03 8.96 -213.18 -1.91 4.11 16 19 C 0.07 1.59 11.95 83.34 1.00 2.58 16 20 C -0.26 -7.30 5.89 -20.08 -0.12 -7.42 16 21 C -0.06 -1.85 5.54 30.02 0.17 -1.68 16 22 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 23 H -0.04 -2.02 7.64 -2.39 -0.02 -2.04 16 24 H -0.01 -0.36 8.05 -2.38 -0.02 -0.38 16 25 H 0.34 13.43 8.36 -89.69 -0.75 12.68 16 26 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 27 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 28 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 30 H 0.21 2.98 8.06 -2.91 -0.02 2.96 16 31 H 0.05 1.78 7.73 -2.39 -0.02 1.76 16 32 H 0.07 2.23 7.96 -2.39 -0.02 2.21 16 Total: -1.00 -68.61 268.27 -0.36 -68.97 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -1.53 Total: 15.55 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: 2.97 Total: -21.91 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -3.82 Total: -108.83 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -68.61 -0.36 -68.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591756076.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.857 kcal (2) G-P(sol) polarization free energy of solvation -68.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds