Wall clock time and date at job start Sun Mar 29 2020 22:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00074 * 2 1 4 4 H 1.48509 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47133 * 299.99839 * 3 2 1 6 6 H 1.48502 * 109.47312 * 60.00213 * 3 2 1 7 7 C 1.37884 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99853 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00137 * 0.02562 * 7 2 1 10 10 N 1.46890 * 109.47050 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00271 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.43189 * 34.89919 * 11 10 9 13 13 C 1.53027 * 109.43381 * 154.74833 * 11 10 9 14 14 C 1.53376 * 109.74477 * 191.81244 * 13 11 10 15 15 C 1.50947 * 108.20488 * 309.35506 * 14 13 11 16 16 N 1.30134 * 128.28396 * 196.80201 * 15 14 13 17 17 N 1.40318 * 108.12236 * 179.72706 * 16 15 14 18 18 H 0.97001 * 126.00077 * 180.02562 * 17 16 15 19 19 C 1.35199 * 107.99252 * 0.29913 * 17 16 15 20 20 C 1.34578 * 107.61871 * 359.60725 * 19 17 16 21 21 C 1.50875 * 128.32682 * 179.97438 * 20 19 17 22 22 H 0.96998 * 119.99845 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46981 * 59.99561 * 9 7 2 24 24 H 1.09004 * 109.47003 * 299.99864 * 9 7 2 25 25 H 1.00900 * 111.00567 * 303.94709 * 10 9 7 26 26 H 1.08996 * 109.42684 * 311.89129 * 13 11 10 27 27 H 1.08996 * 109.42660 * 71.78074 * 13 11 10 28 28 H 1.09007 * 109.71094 * 189.68142 * 14 13 11 29 29 H 1.08998 * 109.72442 * 69.03561 * 14 13 11 30 30 H 1.08002 * 126.19061 * 179.76841 * 19 17 16 31 31 H 1.08996 * 109.72060 * 316.61205 * 21 20 19 32 32 H 1.09004 * 109.71674 * 77.22017 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5053 -4.9071 0.0011 12 1 0.5911 -4.8242 -0.5867 13 6 2.4097 -5.9770 -0.6145 14 6 1.5962 -7.2479 -0.8890 15 6 0.8472 -7.6096 0.3706 16 7 0.2889 -8.7439 0.6791 17 7 -0.2843 -8.6160 1.9534 18 1 -0.7662 -9.3072 2.4339 19 6 -0.0522 -7.3581 2.3914 20 6 0.6477 -6.7172 1.4372 21 6 1.1516 -5.2951 1.4424 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5568 0.8903 25 1 2.8404 -3.5488 -0.7809 26 1 2.8269 -5.6046 -1.5500 27 1 3.2199 -6.2084 0.0770 28 1 2.2672 -8.0616 -1.1644 29 1 0.8887 -7.0643 -1.6976 30 1 -0.3688 -6.9435 3.3371 31 1 0.3751 -4.6312 1.8220 32 1 2.0385 -5.2215 2.0719 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591756077.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:30 Heat of formation + Delta-G solvation = 60.266272 kcal Electronic energy + Delta-G solvation = -14630.523314 eV Core-core repulsion = 12205.794635 eV Total energy + Delta-G solvation = -2424.728678 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.27071 -37.15679 -33.85539 -32.30324 -31.31980 -30.05010 -27.78980 -25.77708 -23.89004 -21.60020 -20.81210 -20.55006 -18.61971 -17.40760 -16.35374 -15.22627 -14.72546 -14.65896 -14.34051 -13.67572 -13.26579 -12.96624 -12.53989 -12.38541 -12.07384 -11.66867 -11.59598 -11.37048 -10.87753 -10.70993 -10.51761 -10.29726 -10.11964 -9.68909 -9.26149 -9.09208 -8.46061 -8.20801 -7.24246 -6.00286 -4.01818 2.00541 2.90455 2.94844 3.32956 3.40224 3.45380 4.45237 4.61023 4.86613 5.09802 5.25079 5.35887 5.48038 5.54083 5.72589 5.79077 5.87917 5.97087 6.08135 6.19751 6.34049 6.49311 6.63909 6.73377 6.89149 7.33409 7.38414 7.47796 7.78972 7.83453 8.17767 8.46284 8.67257 9.08506 9.63129 11.10891 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.055921 B = 0.005634 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.587817 B = 4968.285781 C = 5248.059297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.687 5.687 11 C 0.089 3.911 12 H 0.036 0.964 13 C -0.115 4.115 14 C -0.036 4.036 15 C 0.083 3.917 16 N -0.298 5.298 17 N -0.491 5.491 18 H 0.435 0.565 19 C 0.052 3.948 20 C -0.220 4.220 21 C -0.029 4.029 22 H 0.260 0.740 23 H -0.015 1.015 24 H 0.028 0.972 25 H 0.330 0.670 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.175 0.825 31 H 0.069 0.931 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.818 -14.451 2.399 14.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.318 5.318 11 C -0.021 4.021 12 H 0.054 0.946 13 C -0.154 4.154 14 C -0.076 4.076 15 C -0.085 4.085 16 N -0.121 5.121 17 N -0.200 5.200 18 H 0.278 0.722 19 C -0.093 4.093 20 C -0.232 4.232 21 C -0.068 4.068 22 H 0.070 0.930 23 H 0.003 0.997 24 H 0.047 0.953 25 H 0.147 0.853 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.192 0.808 31 H 0.088 0.912 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.511 -15.471 2.716 15.716 hybrid contribution -0.268 1.365 -0.193 1.404 sum 0.243 -14.106 2.522 14.332 Atomic orbital electron populations 1.69976 1.06088 1.26600 1.51169 1.24992 0.94850 0.99346 0.95442 0.86448 0.80096 0.83439 0.77453 1.19643 1.21163 1.21051 1.21255 0.93569 0.90303 1.49963 0.91903 1.19594 0.90586 0.87359 0.95740 1.60648 1.21139 1.00973 1.49019 1.21431 0.95507 0.90236 0.94959 0.94556 1.21761 0.98364 0.94076 1.01192 1.20126 0.97570 0.98071 0.91826 1.22410 0.97775 0.90885 0.97464 1.76924 1.16666 1.22462 0.96009 1.46257 1.47422 1.11517 1.14816 0.72155 1.22059 1.00718 0.86104 1.00427 1.20361 1.08285 0.99192 0.95370 1.19996 1.00486 0.88755 0.97582 0.93030 0.99678 0.95349 0.85303 0.91167 0.91065 0.90218 0.90006 0.80799 0.91229 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.51 -14.46 9.32 -34.44 -0.32 -14.79 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.19 5.05 5.24 -4.98 -0.03 5.03 16 10 N -0.69 -14.47 6.30 -107.77 -0.68 -15.15 16 11 C 0.09 1.58 2.44 -67.50 -0.16 1.42 16 12 H 0.04 0.71 7.75 -51.93 -0.40 0.30 16 13 C -0.12 -1.64 5.27 -26.52 -0.14 -1.78 16 14 C -0.04 -0.48 6.31 -27.57 -0.17 -0.65 16 15 C 0.08 1.26 7.10 -82.34 -0.58 0.68 16 16 N -0.30 -4.46 12.68 33.75 0.43 -4.04 16 17 N -0.49 -5.87 7.37 30.35 0.22 -5.65 16 18 H 0.44 3.53 8.96 -182.43 -1.64 1.90 16 19 C 0.05 0.64 11.95 -17.36 -0.21 0.44 16 20 C -0.22 -3.34 5.89 -104.98 -0.62 -3.96 16 21 C -0.03 -0.49 5.72 -27.60 -0.16 -0.65 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H -0.01 -0.41 8.05 -51.93 -0.42 -0.82 16 24 H 0.03 0.79 7.66 -51.93 -0.40 0.40 16 25 H 0.33 6.58 8.16 -39.29 -0.32 6.26 16 26 H 0.07 0.92 7.85 -51.93 -0.41 0.51 16 27 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 28 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.07 1.25 7.74 -51.93 -0.40 0.85 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 268.07 15.07 4.04 4.04 Total: -1.00 -32.14 268.07 -8.40 -40.54 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.64 Total: 2.59 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -2.49 Total: -12.79 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.71 Total: -51.00 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.14 -8.40 -40.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591756077.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.806 kcal (2) G-P(sol) polarization free energy of solvation -32.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds