Wall clock time and date at job start Sun Mar 29 2020 21:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 119.99823 * 2 1 4 4 H 1.48499 * 109.47252 * 269.99957 * 3 2 1 5 5 H 1.48500 * 109.47456 * 30.00487 * 3 2 1 6 6 H 1.48503 * 109.47033 * 150.00309 * 3 2 1 7 7 C 1.37876 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00067 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99992 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00204 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47089 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.46986 * 180.02562 * 12 11 10 14 14 C 1.38289 * 119.96926 * 270.01927 * 13 12 11 15 15 C 1.38240 * 120.11036 * 180.02562 * 14 13 12 16 16 C 1.38173 * 120.05812 * 359.67646 * 15 14 13 17 17 C 1.38709 * 119.93675 * 0.57760 * 16 15 14 18 18 O 1.35905 * 120.05346 * 179.72475 * 17 16 15 19 19 C 1.38116 * 119.97322 * 89.99956 * 13 12 11 20 20 H 0.96996 * 119.99810 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47362 * 59.99453 * 9 7 2 22 22 H 1.08995 * 109.47345 * 299.99721 * 9 7 2 23 23 H 1.00894 * 111.00230 * 303.95357 * 10 9 7 24 24 H 1.09002 * 109.47073 * 60.00056 * 11 10 9 25 25 H 1.09007 * 109.47089 * 300.00055 * 11 10 9 26 26 H 1.09002 * 109.47572 * 59.99804 * 12 11 10 27 27 H 1.09000 * 109.47040 * 299.99458 * 12 11 10 28 28 H 1.08001 * 119.94341 * 0.02562 * 14 13 12 29 29 H 1.08006 * 119.97312 * 179.97438 * 15 14 13 30 30 H 1.07996 * 120.03009 * 180.29712 * 16 15 14 31 31 H 0.96705 * 113.99576 * 269.72355 * 18 17 16 32 32 H 1.08003 * 120.03068 * 0.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5054 -4.9070 0.0011 12 6 2.5303 -6.0430 0.0018 13 6 1.8118 -7.3678 0.0018 14 6 1.4817 -7.9746 1.1998 15 6 0.8232 -9.1901 1.2032 16 6 0.4872 -9.7985 0.0090 17 6 0.8219 -9.1944 -1.1939 18 8 0.4976 -9.7934 -2.3699 19 6 1.4834 -7.9746 -1.1947 20 1 -0.4850 0.8400 0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.8405 -3.5487 -0.7808 24 1 0.8802 -4.9818 -0.8886 25 1 0.8807 -4.9812 0.8914 26 1 3.1552 -5.9681 0.8917 27 1 3.1552 -5.9690 -0.8883 28 1 1.7388 -7.4981 2.1343 29 1 0.5668 -9.6622 2.1401 30 1 -0.0315 -10.7457 0.0122 31 1 1.1804 -10.3880 -2.7099 32 1 1.7415 -7.5003 -2.1300 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591756744.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:17 Heat of formation + Delta-G solvation = -32.368303 kcal Electronic energy + Delta-G solvation = -13917.604311 eV Core-core repulsion = 11456.565945 eV Total energy + Delta-G solvation = -2461.038366 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.82507 -37.16074 -35.54095 -33.07648 -31.79505 -29.94092 -28.38171 -25.84140 -22.84277 -22.60359 -21.30392 -20.85480 -18.05768 -16.48160 -16.34320 -15.89794 -15.23833 -14.79163 -14.53123 -14.10315 -13.55657 -13.33115 -12.64683 -12.46782 -12.25228 -11.85145 -11.69780 -11.51099 -11.06701 -10.79136 -10.70233 -10.50650 -10.47041 -9.89994 -9.20271 -8.85497 -8.58611 -8.47409 -7.30240 -6.02114 -4.04403 1.19743 1.28600 3.32643 3.38526 3.43197 3.57259 4.08815 4.43841 4.77153 4.83326 5.06375 5.27331 5.33688 5.36638 5.47823 5.55972 5.68864 5.87288 5.92277 6.06470 6.28620 6.34928 6.36219 6.49716 6.68102 6.77795 7.26375 7.43105 7.53355 7.78920 8.13436 8.39372 8.61623 9.04908 9.60516 11.09089 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.058725 B = 0.004284 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.686509 B = 6534.121440 C = 6642.866888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.691 5.691 11 C 0.066 3.934 12 C -0.081 4.081 13 C -0.053 4.053 14 C -0.124 4.124 15 C -0.103 4.103 16 C -0.156 4.156 17 C 0.102 3.898 18 O -0.501 6.501 19 C -0.143 4.143 20 H 0.261 0.739 21 H -0.014 1.014 22 H 0.028 0.972 23 H 0.328 0.672 24 H 0.019 0.981 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.387 0.613 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.464 -19.139 -0.766 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.321 5.321 11 C -0.064 4.064 12 C -0.119 4.119 13 C -0.054 4.054 14 C -0.142 4.142 15 C -0.121 4.121 16 C -0.175 4.175 17 C 0.058 3.942 18 O -0.310 6.310 19 C -0.162 4.162 20 H 0.071 0.929 21 H 0.004 0.996 22 H 0.046 0.954 23 H 0.144 0.856 24 H 0.037 0.963 25 H 0.083 0.917 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.243 0.757 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.856 -18.668 -0.014 18.885 hybrid contribution 0.323 0.586 -1.026 1.225 sum 3.178 -18.082 -1.040 18.389 Atomic orbital electron populations 1.69969 1.06116 1.26805 1.50876 1.25002 0.94881 0.99408 0.95333 0.86470 0.79786 0.82960 0.78023 1.20723 1.21226 1.19741 1.21193 0.93527 0.90241 1.50386 0.91921 1.19559 0.90616 0.87349 0.95829 1.60673 1.21331 1.01283 1.48852 1.21836 0.94890 0.89630 1.00090 1.20683 0.97755 0.90062 1.03386 1.19910 0.97007 0.96082 0.92420 1.21167 0.99511 0.95480 0.98068 1.21022 0.98072 0.95497 0.97557 1.21351 1.02855 1.01172 0.92075 1.18468 0.97697 0.92955 0.85125 1.84841 1.46142 1.63513 1.36551 1.21365 1.00111 0.95968 0.98713 0.92896 0.99596 0.95400 0.85594 0.96288 0.91665 0.89985 0.91238 0.85491 0.85708 0.85797 0.75744 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.84 9.32 -34.44 -0.32 -15.17 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.19 5.20 5.44 -4.98 -0.03 5.18 16 10 N -0.69 -15.09 6.49 -115.06 -0.75 -15.84 16 11 C 0.07 1.20 5.67 -3.83 -0.02 1.17 16 12 C -0.08 -1.16 5.60 -27.88 -0.16 -1.31 16 13 C -0.05 -0.71 5.13 -104.64 -0.54 -1.25 16 14 C -0.12 -1.51 9.70 -39.56 -0.38 -1.89 16 15 C -0.10 -1.12 10.04 -39.60 -0.40 -1.51 16 16 C -0.16 -1.72 9.99 -39.43 -0.39 -2.12 16 17 C 0.10 1.23 6.70 -39.22 -0.26 0.97 16 18 O -0.50 -5.39 13.50 -19.44 -0.26 -5.66 16 19 C -0.14 -1.85 9.64 -39.43 -0.38 -2.23 16 20 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 21 H -0.01 -0.39 8.14 -51.93 -0.42 -0.82 16 22 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.33 6.74 8.72 -39.29 -0.34 6.40 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 26 H 0.08 1.14 8.09 -51.93 -0.42 0.72 16 27 H 0.07 0.92 8.08 -51.93 -0.42 0.51 16 28 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.39 2.14 9.06 45.56 0.41 2.55 16 32 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 281.70 15.07 4.25 4.25 Total: -1.00 -32.37 281.70 -7.72 -40.09 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -3.70 Total: 3.51 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -2.98 Total: -16.65 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.01 Total: -42.39 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.26 Total: -5.66 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.37 -7.72 -40.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591756744.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.727 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds