Wall clock time and date at job start Sun Mar 29 2020 21:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 119.99823 * 2 1 4 4 H 1.48499 * 109.47252 * 269.99957 * 3 2 1 5 5 H 1.48500 * 109.47456 * 30.00487 * 3 2 1 6 6 H 1.48503 * 109.47033 * 150.00309 * 3 2 1 7 7 C 1.37876 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00067 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99992 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00204 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47089 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.46986 * 180.02562 * 12 11 10 14 14 C 1.38289 * 119.96926 * 270.01927 * 13 12 11 15 15 C 1.38240 * 120.11036 * 180.02562 * 14 13 12 16 16 C 1.38173 * 120.05812 * 359.67646 * 15 14 13 17 17 C 1.38709 * 119.93675 * 0.57760 * 16 15 14 18 18 O 1.35905 * 120.05346 * 179.72475 * 17 16 15 19 19 C 1.38116 * 119.97322 * 89.99956 * 13 12 11 20 20 H 0.96996 * 119.99810 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47362 * 59.99453 * 9 7 2 22 22 H 1.08995 * 109.47345 * 299.99721 * 9 7 2 23 23 H 1.00894 * 111.00230 * 303.95357 * 10 9 7 24 24 H 1.09002 * 109.47073 * 60.00056 * 11 10 9 25 25 H 1.09007 * 109.47089 * 300.00055 * 11 10 9 26 26 H 1.09002 * 109.47572 * 59.99804 * 12 11 10 27 27 H 1.09000 * 109.47040 * 299.99458 * 12 11 10 28 28 H 1.08001 * 119.94341 * 0.02562 * 14 13 12 29 29 H 1.08006 * 119.97312 * 179.97438 * 15 14 13 30 30 H 1.07996 * 120.03009 * 180.29712 * 16 15 14 31 31 H 0.96705 * 113.99576 * 269.72355 * 18 17 16 32 32 H 1.08003 * 120.03068 * 0.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5054 -4.9070 0.0011 12 6 2.5303 -6.0430 0.0018 13 6 1.8118 -7.3678 0.0018 14 6 1.4817 -7.9746 1.1998 15 6 0.8232 -9.1901 1.2032 16 6 0.4872 -9.7985 0.0090 17 6 0.8219 -9.1944 -1.1939 18 8 0.4976 -9.7934 -2.3699 19 6 1.4834 -7.9746 -1.1947 20 1 -0.4850 0.8400 0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.8405 -3.5487 -0.7808 24 1 0.8802 -4.9818 -0.8886 25 1 0.8807 -4.9812 0.8914 26 1 3.1552 -5.9681 0.8917 27 1 3.1552 -5.9690 -0.8883 28 1 1.7388 -7.4981 2.1343 29 1 0.5668 -9.6622 2.1401 30 1 -0.0315 -10.7457 0.0122 31 1 1.1804 -10.3880 -2.7099 32 1 1.7415 -7.5003 -2.1300 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591756744.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:17 Heat of formation + Delta-G solvation = -55.800482 kcal Electronic energy + Delta-G solvation = -13918.620406 eV Core-core repulsion = 11456.565945 eV Total energy + Delta-G solvation = -2462.054462 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.72500 -38.18261 -37.10323 -34.90968 -33.31813 -30.89735 -29.86811 -27.61412 -24.39396 -23.51087 -23.18571 -21.96131 -18.95584 -18.55494 -17.31868 -17.02335 -16.66873 -16.24627 -16.08122 -15.40267 -14.92002 -14.64950 -14.07077 -13.91657 -13.79583 -13.27811 -12.97216 -12.83651 -12.64299 -12.43360 -12.36050 -12.02869 -11.88937 -11.42343 -11.25446 -10.67601 -9.79351 -9.52372 -9.18125 -8.23648 -6.35813 0.30027 0.37274 1.41655 1.43816 1.55815 2.39948 2.68299 3.09672 3.25433 3.53851 3.92858 4.04436 4.18377 4.25444 4.37221 4.43691 4.59817 4.62098 4.86742 4.98700 5.06573 5.08090 5.17022 5.25745 5.45645 5.47441 5.60074 5.68419 5.93174 5.99256 6.39960 6.69276 6.86138 6.87063 7.35580 8.88335 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.058725 B = 0.004284 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.686509 B = 6534.121440 C = 6642.866888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.977 3.023 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.206 3.794 10 N -0.687 5.687 11 C 0.069 3.931 12 C -0.066 4.066 13 C -0.069 4.069 14 C -0.135 4.135 15 C -0.101 4.101 16 C -0.157 4.157 17 C 0.096 3.904 18 O -0.512 6.512 19 C -0.159 4.159 20 H 0.266 0.734 21 H -0.042 1.042 22 H -0.001 1.001 23 H 0.337 0.663 24 H 0.009 0.991 25 H 0.055 0.945 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.135 0.865 29 H 0.153 0.847 30 H 0.146 0.854 31 H 0.409 0.591 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.446 -19.829 -0.545 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.801 3.199 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.078 3.922 10 N -0.317 5.317 11 C -0.061 4.061 12 C -0.104 4.104 13 C -0.070 4.070 14 C -0.153 4.153 15 C -0.119 4.119 16 C -0.175 4.175 17 C 0.052 3.948 18 O -0.325 6.325 19 C -0.178 4.178 20 H 0.074 0.926 21 H -0.024 1.024 22 H 0.017 0.983 23 H 0.154 0.846 24 H 0.028 0.972 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.153 0.847 29 H 0.171 0.829 30 H 0.163 0.837 31 H 0.268 0.732 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.865 -19.398 0.193 19.780 hybrid contribution -0.034 0.678 -1.117 1.307 sum 3.831 -18.720 -0.924 19.130 Atomic orbital electron populations 1.70105 1.07974 1.28110 1.51458 1.26017 0.95804 1.03617 0.94433 0.85265 0.78488 0.77599 0.78532 1.19607 1.20697 1.18645 1.21559 0.93945 0.91277 1.50784 0.91407 1.19225 0.90726 0.89135 0.93103 1.60548 1.20481 1.01425 1.49292 1.21865 0.95804 0.89310 0.99110 1.20492 0.96664 0.89083 1.04135 1.19830 0.98131 0.95811 0.93220 1.21377 0.99763 0.96216 0.97968 1.21352 0.96912 0.94825 0.98765 1.21655 1.02315 1.01888 0.91680 1.18596 0.97372 0.92842 0.85995 1.84780 1.47417 1.64058 1.36225 1.21465 1.00963 0.96725 0.98621 0.92563 1.02406 0.98303 0.84578 0.97228 0.92661 0.89444 0.90269 0.84669 0.82938 0.83653 0.73170 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.73 13.29 21.45 0.28 -57.44 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.98 44.63 29.54 68.60 2.03 46.65 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.54 -31.29 9.32 25.60 0.24 -31.05 16 8 H 0.07 3.79 7.81 -2.91 -0.02 3.77 16 9 C 0.21 11.46 5.44 85.56 0.47 11.93 16 10 N -0.69 -30.39 6.49 -517.93 -3.36 -33.75 16 11 C 0.07 2.55 5.67 86.30 0.49 3.04 16 12 C -0.07 -1.85 5.60 29.85 0.17 -1.68 16 13 C -0.07 -1.79 5.13 -19.88 -0.10 -1.89 16 14 C -0.14 -3.09 9.70 22.28 0.22 -2.88 16 15 C -0.10 -1.94 10.04 22.25 0.22 -1.72 16 16 C -0.16 -3.11 9.99 22.37 0.22 -2.89 16 17 C 0.10 2.19 6.70 22.51 0.15 2.34 16 18 O -0.51 -10.21 13.50 -92.48 -1.25 -11.46 16 19 C -0.16 -4.02 9.64 22.36 0.22 -3.80 16 20 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 21 H -0.04 -2.50 8.14 -2.38 -0.02 -2.52 16 22 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 23 H 0.34 13.87 8.72 -89.70 -0.78 13.09 16 24 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 26 H 0.09 2.35 8.09 -2.39 -0.02 2.33 16 27 H 0.08 2.04 8.08 -2.39 -0.02 2.02 16 28 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 29 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 30 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 31 H 0.41 3.78 9.06 -74.05 -0.67 3.11 16 32 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -69.34 281.70 0.11 -69.22 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -0.34 Total: 14.95 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: 2.75 Total: -28.17 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -3.08 Total: -91.19 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -1.25 Total: -11.46 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -69.34 0.11 -69.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591756744.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.423 kcal (2) G-P(sol) polarization free energy of solvation -69.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds