Wall clock time and date at job start Sun Mar 29 2020 22:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32152 * 119.99915 * 2 1 4 4 C 1.32126 * 119.99797 * 180.27318 * 3 2 1 5 5 C 1.38386 * 119.99855 * 359.73745 * 4 3 2 6 6 N 1.32124 * 119.99702 * 359.97438 * 5 4 3 7 7 C 1.32156 * 119.99988 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99509 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.47184 * 89.99945 * 8 7 6 10 10 N 1.46898 * 109.47006 * 179.97438 * 9 8 7 11 11 C 1.46903 * 110.99673 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47054 * 180.02562 * 11 10 9 13 13 H 1.08009 * 120.00179 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00137 * 180.02562 * 12 11 10 15 15 N 1.31503 * 119.99943 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99880 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47291 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46901 * 120.00068 * 16 14 12 19 19 H 1.48498 * 109.47023 * 240.00032 * 16 14 12 20 20 H 1.08995 * 109.46906 * 270.24374 * 1 2 3 21 21 H 1.09001 * 109.46795 * 30.24272 * 1 2 3 22 22 H 1.08997 * 109.46833 * 150.24275 * 1 2 3 23 23 H 1.07998 * 119.99650 * 179.75688 * 4 3 2 24 24 H 1.08005 * 120.00212 * 179.97438 * 5 4 3 25 25 H 1.09001 * 109.47612 * 330.00000 * 8 7 6 26 26 H 1.09001 * 109.47122 * 209.99831 * 8 7 6 27 27 H 1.09001 * 109.47002 * 299.99404 * 9 8 7 28 28 H 1.08993 * 109.46955 * 59.99842 * 9 8 7 29 29 H 1.00906 * 111.00348 * 56.04933 * 10 9 8 30 30 H 1.08993 * 109.47323 * 299.99830 * 11 10 9 31 31 H 1.08995 * 109.46831 * 60.00909 * 11 10 9 32 32 H 0.97001 * 120.00215 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4891 1.1445 -0.0055 5 6 4.1809 -0.0540 -0.0057 6 7 3.5202 -1.1982 0.0001 7 6 2.1987 -1.1981 0.0055 8 6 1.4452 -2.5031 0.0115 9 6 1.1961 -2.9417 1.4561 10 7 0.4611 -4.2135 1.4619 11 6 0.2041 -4.6667 2.8354 12 6 -0.5493 -5.9714 2.8012 13 1 -0.8107 -6.4194 1.8538 14 6 -0.9050 -6.5932 3.9793 15 7 -0.5872 -6.0475 5.1328 16 14 -1.8395 -8.2101 3.9368 17 1 -2.0740 -8.6095 2.5258 18 1 -1.0436 -9.2600 4.6221 19 1 -3.1432 -8.0466 4.6286 20 1 -0.3633 0.0044 1.0276 21 1 -0.3633 0.8878 -0.5176 22 1 -0.3633 -0.8921 -0.5101 23 1 4.0290 2.0798 -0.0094 24 1 5.2610 -0.0541 -0.0106 25 1 2.0321 -3.2640 -0.5031 26 1 0.4906 -2.3739 -0.4986 27 1 2.1507 -3.0710 1.9662 28 1 0.6093 -2.1809 1.9706 29 1 0.9545 -4.9188 0.9351 30 1 1.1519 -4.8085 3.3546 31 1 -0.3892 -3.9179 3.3600 32 1 -0.8377 -6.4848 5.9616 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591767758.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:20 Heat of formation + Delta-G solvation = 34.724973 kcal Electronic energy + Delta-G solvation = -14190.104978 eV Core-core repulsion = 11764.268746 eV Total energy + Delta-G solvation = -2425.836232 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.21978 -36.11856 -34.54292 -33.81894 -32.29143 -29.56474 -28.02738 -26.27615 -23.81087 -22.89581 -21.55225 -21.19169 -17.88838 -16.51314 -16.39905 -15.58555 -15.18957 -14.85985 -14.52964 -13.74231 -13.44166 -12.92471 -12.87450 -12.75553 -12.25443 -11.96271 -11.75878 -11.56637 -11.22518 -10.93492 -10.82063 -10.61880 -10.54424 -9.95261 -9.23730 -9.07775 -8.97151 -8.49194 -7.34723 -6.03660 -4.05819 0.72152 1.09785 3.31267 3.38408 3.43487 3.60845 3.97487 4.12391 4.41473 4.43770 4.66349 5.03196 5.11731 5.25224 5.32559 5.43347 5.45760 5.56901 5.64797 5.85290 5.91308 5.96686 6.27264 6.37725 6.49404 7.22458 7.26725 7.40766 7.76897 7.77167 8.10879 8.35725 8.58324 9.03661 9.59289 11.07624 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.058582 B = 0.004716 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.850138 B = 5936.128233 C = 6048.041750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.084 3.916 3 N -0.441 5.441 4 C 0.040 3.960 5 C 0.042 3.958 6 N -0.435 5.435 7 C 0.094 3.906 8 C -0.070 4.070 9 C 0.069 3.931 10 N -0.688 5.688 11 C 0.193 3.807 12 C -0.514 4.514 13 H 0.064 0.936 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.899 3.101 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.284 1.284 20 H 0.086 0.914 21 H 0.076 0.924 22 H 0.088 0.912 23 H 0.166 0.834 24 H 0.167 0.833 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.021 0.979 28 H 0.064 0.936 29 H 0.330 0.670 30 H -0.013 1.013 31 H 0.028 0.972 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.431 12.381 -10.554 17.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.056 4.056 3 N -0.157 5.157 4 C -0.120 4.120 5 C -0.118 4.118 6 N -0.149 5.149 7 C -0.047 4.047 8 C -0.109 4.109 9 C -0.062 4.062 10 N -0.319 5.319 11 C 0.067 3.933 12 C -0.552 4.552 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.210 1.210 20 H 0.105 0.895 21 H 0.095 0.905 22 H 0.107 0.893 23 H 0.184 0.816 24 H 0.184 0.816 25 H 0.100 0.900 26 H 0.114 0.886 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.146 0.854 30 H 0.004 0.996 31 H 0.046 0.954 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.796 12.657 -10.414 17.385 hybrid contribution 0.689 -0.985 0.517 1.309 sum 6.486 11.672 -9.897 16.620 Atomic orbital electron populations 1.20825 0.87465 1.04001 1.04091 1.22175 0.98631 0.88893 0.95938 1.68280 1.08933 1.29327 1.09125 1.23688 0.90899 0.99735 0.97679 1.23733 1.01798 0.88891 0.97385 1.68319 1.08452 1.29774 1.08405 1.22212 0.90404 0.96869 0.95201 1.20663 0.99329 0.91313 0.99587 1.21745 0.96472 0.94799 0.93135 1.60699 1.48826 1.03752 1.18590 1.19565 0.95158 0.95749 0.82870 1.21226 1.35707 1.05571 0.92743 0.91797 1.24998 0.96213 0.98035 0.95370 1.69972 1.47109 1.39396 0.97307 0.86418 0.79487 0.83223 0.78143 1.19600 1.21106 1.20982 0.89517 0.90464 0.89312 0.81639 0.81611 0.89975 0.88648 0.96035 0.91749 0.85372 0.99561 0.95387 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.79 36.01 0.35 -0.83 16 2 C 0.08 1.13 6.78 -82.41 -0.56 0.57 16 3 N -0.44 -5.82 10.42 -9.29 -0.10 -5.92 16 4 C 0.04 0.43 11.23 -17.37 -0.19 0.23 16 5 C 0.04 0.47 11.23 -17.37 -0.20 0.27 16 6 N -0.43 -6.25 10.42 -9.29 -0.10 -6.35 16 7 C 0.09 1.35 6.04 -82.42 -0.50 0.85 16 8 C -0.07 -1.01 5.38 -27.88 -0.15 -1.16 16 9 C 0.07 1.24 5.67 -3.82 -0.02 1.22 16 10 N -0.69 -14.62 6.49 -115.06 -0.75 -15.36 16 11 C 0.19 5.11 5.44 -4.97 -0.03 5.08 16 12 C -0.51 -14.59 9.32 -34.44 -0.32 -14.91 16 13 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -27.03 13.28 55.43 0.74 -26.29 16 16 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 21 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.09 0.91 5.95 -51.93 -0.31 0.60 16 23 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 24 H 0.17 1.26 8.06 -52.48 -0.42 0.83 16 25 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.10 1.23 5.94 -51.93 -0.31 0.93 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.33 6.67 8.72 -39.29 -0.34 6.33 16 30 H -0.01 -0.38 8.14 -51.93 -0.42 -0.80 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 277.65 15.07 4.18 4.18 Total: -1.00 -32.22 277.65 -7.06 -39.29 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -4.31 Total: 1.00 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -1.71 Total: -7.20 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.20 Total: -53.93 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.22 -7.06 -39.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591767758.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.011 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds