Wall clock time and date at job start Sun Mar 29 2020 22:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32152 * 119.99915 * 2 1 4 4 C 1.32126 * 119.99797 * 180.27318 * 3 2 1 5 5 C 1.38386 * 119.99855 * 359.73745 * 4 3 2 6 6 N 1.32124 * 119.99702 * 359.97438 * 5 4 3 7 7 C 1.32156 * 119.99988 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99509 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.47184 * 89.99945 * 8 7 6 10 10 N 1.46898 * 109.47006 * 179.97438 * 9 8 7 11 11 C 1.46903 * 110.99673 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47054 * 180.02562 * 11 10 9 13 13 H 1.08009 * 120.00179 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00137 * 180.02562 * 12 11 10 15 15 N 1.31503 * 119.99943 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99880 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47291 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46901 * 120.00068 * 16 14 12 19 19 H 1.48498 * 109.47023 * 240.00032 * 16 14 12 20 20 H 1.08995 * 109.46906 * 270.24374 * 1 2 3 21 21 H 1.09001 * 109.46795 * 30.24272 * 1 2 3 22 22 H 1.08997 * 109.46833 * 150.24275 * 1 2 3 23 23 H 1.07998 * 119.99650 * 179.75688 * 4 3 2 24 24 H 1.08005 * 120.00212 * 179.97438 * 5 4 3 25 25 H 1.09001 * 109.47612 * 330.00000 * 8 7 6 26 26 H 1.09001 * 109.47122 * 209.99831 * 8 7 6 27 27 H 1.09001 * 109.47002 * 299.99404 * 9 8 7 28 28 H 1.08993 * 109.46955 * 59.99842 * 9 8 7 29 29 H 1.00906 * 111.00348 * 56.04933 * 10 9 8 30 30 H 1.08993 * 109.47323 * 299.99830 * 11 10 9 31 31 H 1.08995 * 109.46831 * 60.00909 * 11 10 9 32 32 H 0.97001 * 120.00215 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4891 1.1445 -0.0055 5 6 4.1809 -0.0540 -0.0057 6 7 3.5202 -1.1982 0.0001 7 6 2.1987 -1.1981 0.0055 8 6 1.4452 -2.5031 0.0115 9 6 1.1961 -2.9417 1.4561 10 7 0.4611 -4.2135 1.4619 11 6 0.2041 -4.6667 2.8354 12 6 -0.5493 -5.9714 2.8012 13 1 -0.8107 -6.4194 1.8538 14 6 -0.9050 -6.5932 3.9793 15 7 -0.5872 -6.0475 5.1328 16 14 -1.8395 -8.2101 3.9368 17 1 -2.0740 -8.6095 2.5258 18 1 -1.0436 -9.2600 4.6221 19 1 -3.1432 -8.0466 4.6286 20 1 -0.3633 0.0044 1.0276 21 1 -0.3633 0.8878 -0.5176 22 1 -0.3633 -0.8921 -0.5101 23 1 4.0290 2.0798 -0.0094 24 1 5.2610 -0.0541 -0.0106 25 1 2.0321 -3.2640 -0.5031 26 1 0.4906 -2.3739 -0.4986 27 1 2.1507 -3.0710 1.9662 28 1 0.6093 -2.1809 1.9706 29 1 0.9545 -4.9188 0.9351 30 1 1.1519 -4.8085 3.3546 31 1 -0.3892 -3.9179 3.3600 32 1 -0.8377 -6.4848 5.9616 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591767758.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:19 Heat of formation + Delta-G solvation = 10.925955 kcal Electronic energy + Delta-G solvation = -14191.136981 eV Core-core repulsion = 11764.268746 eV Total energy + Delta-G solvation = -2426.868235 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.17044 -37.68852 -35.58605 -35.28159 -34.11010 -30.98789 -29.03542 -28.03941 -25.21414 -23.89795 -23.37786 -22.57155 -18.87181 -18.56976 -17.39957 -16.82374 -16.63690 -16.24536 -16.07869 -15.14284 -14.93056 -14.29141 -14.04652 -13.84364 -13.78615 -13.48207 -13.19555 -12.75346 -12.64597 -12.57864 -12.50023 -12.10661 -11.91401 -11.87427 -11.29721 -10.67322 -10.03003 -9.98050 -9.20142 -8.22805 -6.34377 -0.20720 0.13741 1.43022 1.43577 1.57873 2.40727 2.66080 3.05218 3.11107 3.21585 3.49444 3.58009 3.94209 4.05802 4.20244 4.29492 4.40061 4.45619 4.63609 4.71907 4.78041 4.97146 4.99814 5.10766 5.17475 5.23952 5.51911 5.61282 5.99636 6.33329 6.38862 6.68335 6.83059 6.87616 7.36985 8.89433 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.058582 B = 0.004716 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.850138 B = 5936.128233 C = 6048.041750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.074 3.926 3 N -0.461 5.461 4 C 0.049 3.951 5 C 0.040 3.960 6 N -0.463 5.463 7 C 0.071 3.929 8 C -0.055 4.055 9 C 0.076 3.924 10 N -0.681 5.681 11 C 0.206 3.794 12 C -0.535 4.535 13 H 0.069 0.931 14 C 0.000 4.000 15 N -0.937 5.937 16 Si 0.976 3.024 17 H -0.260 1.260 18 H -0.279 1.279 19 H -0.278 1.278 20 H 0.081 0.919 21 H 0.088 0.912 22 H 0.095 0.905 23 H 0.207 0.793 24 H 0.202 0.798 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.005 0.995 28 H 0.059 0.941 29 H 0.338 0.662 30 H -0.043 1.043 31 H 0.001 0.999 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.611 12.595 -11.729 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.066 4.066 3 N -0.177 5.177 4 C -0.111 4.111 5 C -0.120 4.120 6 N -0.178 5.178 7 C -0.069 4.069 8 C -0.094 4.094 9 C -0.054 4.054 10 N -0.311 5.311 11 C 0.079 3.921 12 C -0.573 4.573 13 H 0.087 0.913 14 C -0.198 4.198 15 N -0.577 5.577 16 Si 0.800 3.200 17 H -0.183 1.183 18 H -0.204 1.204 19 H -0.204 1.204 20 H 0.100 0.900 21 H 0.107 0.893 22 H 0.113 0.887 23 H 0.224 0.776 24 H 0.219 0.781 25 H 0.101 0.899 26 H 0.128 0.872 27 H 0.023 0.977 28 H 0.078 0.922 29 H 0.155 0.845 30 H -0.025 1.025 31 H 0.019 0.981 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.962 12.870 -11.615 18.333 hybrid contribution 0.762 -0.916 0.879 1.480 sum 6.724 11.954 -10.737 17.418 Atomic orbital electron populations 1.20857 0.86451 1.04926 1.04005 1.22389 0.99510 0.88776 0.95885 1.68353 1.10265 1.29174 1.09906 1.24394 0.90268 1.01309 0.95156 1.24371 1.03446 0.88155 0.96035 1.68274 1.08705 1.31693 1.09167 1.22082 0.90745 0.96773 0.97293 1.20452 1.00365 0.91853 0.96714 1.21709 0.94935 0.92952 0.95826 1.60566 1.49963 1.05053 1.15535 1.19228 0.93104 0.94802 0.85006 1.21588 1.36105 1.06366 0.93209 0.91272 1.25994 0.97000 1.02036 0.94807 1.70104 1.48182 1.41281 0.98148 0.85234 0.77898 0.78131 0.78721 1.18349 1.20445 1.20359 0.90007 0.89274 0.88659 0.77643 0.78092 0.89861 0.87150 0.97705 0.92248 0.84499 1.02540 0.98054 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.26 9.79 71.24 0.70 -1.56 16 2 C 0.07 1.91 6.78 42.54 0.29 2.20 16 3 N -0.46 -11.41 10.42 -183.30 -1.91 -13.32 16 4 C 0.05 0.92 11.23 84.68 0.95 1.87 16 5 C 0.04 0.81 11.23 84.68 0.95 1.76 16 6 N -0.46 -12.86 10.42 -183.30 -1.91 -14.77 16 7 C 0.07 1.99 6.04 42.53 0.26 2.25 16 8 C -0.06 -1.57 5.38 29.85 0.16 -1.41 16 9 C 0.08 2.78 5.67 86.31 0.49 3.27 16 10 N -0.68 -29.33 6.49 -517.94 -3.36 -32.69 16 11 C 0.21 11.27 5.44 85.56 0.47 11.74 16 12 C -0.53 -30.63 9.32 25.60 0.24 -30.39 16 13 H 0.07 3.81 7.81 -2.91 -0.02 3.78 16 14 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 15 N -0.94 -57.23 13.28 21.45 0.28 -56.94 16 16 Si 0.98 44.25 29.54 68.60 2.03 46.28 16 17 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 20 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 21 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.09 1.87 5.95 -2.39 -0.01 1.85 16 23 H 0.21 2.02 8.06 -2.91 -0.02 2.00 16 24 H 0.20 2.38 8.06 -2.91 -0.02 2.36 16 25 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.11 2.76 5.94 -2.39 -0.01 2.74 16 27 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.34 13.70 8.72 -89.69 -0.78 12.92 16 30 H -0.04 -2.56 8.14 -2.39 -0.02 -2.58 16 31 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -69.75 277.65 0.42 -69.33 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.33 Total: 11.95 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 4.96 Total: -9.85 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -6.90 Total: -117.71 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -69.75 0.42 -69.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591767758.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.260 kcal (2) G-P(sol) polarization free energy of solvation -69.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds