Wall clock time and date at job start Sun Mar 29 2020 22:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38387 * 119.99804 * 2 1 4 4 N 1.32127 * 119.99334 * 180.25323 * 3 2 1 5 5 C 1.32154 * 120.00011 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99512 * 180.02562 * 5 4 3 7 7 C 1.52991 * 109.47700 * 304.98381 * 6 5 4 8 8 N 1.46892 * 109.47630 * 180.02562 * 7 6 5 9 9 C 1.46896 * 111.00574 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47370 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99777 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00050 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99957 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47322 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47307 * 119.99510 * 14 12 10 17 17 H 1.48499 * 109.47037 * 239.99612 * 14 12 10 18 18 C 1.38337 * 120.00458 * 0.02562 * 5 4 3 19 19 N 1.32124 * 119.99937 * 180.28111 * 2 1 3 20 20 H 1.09000 * 109.46964 * 269.72239 * 1 2 3 21 21 H 1.09003 * 109.47060 * 29.72052 * 1 2 3 22 22 H 1.08996 * 109.47300 * 149.72105 * 1 2 3 23 23 H 1.08001 * 120.00386 * 0.25864 * 3 2 1 24 24 H 1.08996 * 109.46796 * 64.98833 * 6 5 4 25 25 H 1.09003 * 109.46732 * 184.98041 * 6 5 4 26 26 H 1.09001 * 109.46968 * 300.00344 * 7 6 5 27 27 H 1.09001 * 109.47032 * 59.99545 * 7 6 5 28 28 H 1.00901 * 110.99922 * 303.95730 * 8 7 6 29 29 H 1.08997 * 109.46927 * 300.00037 * 9 8 7 30 30 H 1.08998 * 109.46891 * 59.99772 * 9 8 7 31 31 H 0.97003 * 120.00286 * 180.02562 * 13 12 10 32 32 H 1.08001 * 120.00175 * 179.97438 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5202 1.1984 -0.0051 5 6 4.1808 0.0539 -0.0106 6 6 5.6879 0.0539 -0.0158 7 6 6.1939 0.8842 -1.1969 8 7 7.6629 0.8837 -1.2023 9 6 8.1856 1.6727 -2.3258 10 6 9.6922 1.6485 -2.2987 11 1 10.2096 1.1020 -1.5241 12 6 10.4099 2.3248 -3.2622 13 7 9.7798 2.9907 -4.2051 14 14 12.2773 2.2954 -3.2282 15 1 12.7387 1.4823 -2.0744 16 1 12.7861 1.6990 -4.4895 17 1 12.7919 3.6819 -3.0934 18 6 3.4892 -1.1442 -0.0117 19 7 2.1676 -1.1442 -0.0056 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3633 0.8925 -0.5095 22 1 -0.3634 -0.8874 -0.5181 23 1 1.6589 2.1338 0.0042 24 1 6.0544 0.4857 0.9155 25 1 6.0509 -0.9697 -0.1092 26 1 5.8274 0.4524 -2.1282 27 1 5.8309 1.9078 -1.1035 28 1 8.0278 1.2194 -0.3235 29 1 7.8325 1.2461 -3.2646 30 1 7.8367 2.7018 -2.2404 31 1 10.2848 3.4663 -4.8832 32 1 4.0291 -2.0795 -0.0167 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591771104.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:23 Heat of formation + Delta-G solvation = 31.847522 kcal Electronic energy + Delta-G solvation = -13915.196955 eV Core-core repulsion = 11489.235947 eV Total energy + Delta-G solvation = -2425.961008 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.19898 -36.15604 -34.55039 -33.34432 -32.43577 -30.50472 -27.49226 -25.54486 -24.76803 -22.93567 -21.42781 -21.04789 -17.80115 -16.40436 -16.27812 -15.79714 -15.24361 -14.85864 -14.48734 -13.88457 -13.55231 -12.92428 -12.85814 -12.73016 -12.27130 -12.08208 -11.79763 -11.57104 -11.19513 -11.08818 -10.83456 -10.62152 -10.57359 -9.93510 -9.22481 -9.06572 -8.97000 -8.47131 -7.29369 -6.01751 -4.03831 0.69821 1.08793 3.32216 3.39194 3.44399 3.58486 3.92404 4.14166 4.37270 4.44663 4.61382 4.94616 5.03061 5.26368 5.30053 5.34165 5.46015 5.49805 5.52209 5.71823 5.83512 5.95439 6.29867 6.41229 6.51636 7.24161 7.27349 7.44256 7.75425 7.79550 8.13691 8.39728 8.61970 9.05728 9.61038 11.09493 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.077997 B = 0.004167 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.902010 B = 6717.602112 C = 6900.995808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.060 3.940 3 C 0.055 3.945 4 N -0.431 5.431 5 C 0.088 3.912 6 C -0.065 4.065 7 C 0.068 3.932 8 N -0.691 5.691 9 C 0.193 3.807 10 C -0.513 4.513 11 H 0.063 0.937 12 C 0.054 3.946 13 N -0.898 5.898 14 Si 0.900 3.100 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.285 1.285 18 C 0.056 3.944 19 N -0.440 5.440 20 H 0.079 0.921 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.166 0.834 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.060 0.940 27 H 0.030 0.970 28 H 0.329 0.671 29 H 0.027 0.973 30 H -0.013 1.013 31 H 0.261 0.739 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.270 -5.344 9.166 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.080 4.080 3 C -0.105 4.105 4 N -0.146 5.146 5 C -0.053 4.053 6 C -0.104 4.104 7 C -0.062 4.062 8 N -0.322 5.322 9 C 0.067 3.933 10 C -0.552 4.552 11 H 0.082 0.918 12 C -0.147 4.147 13 N -0.538 5.538 14 Si 0.728 3.272 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.104 4.104 19 N -0.155 5.155 20 H 0.097 0.903 21 H 0.097 0.903 22 H 0.097 0.903 23 H 0.184 0.816 24 H 0.101 0.899 25 H 0.109 0.891 26 H 0.079 0.921 27 H 0.049 0.951 28 H 0.145 0.855 29 H 0.045 0.955 30 H 0.005 0.995 31 H 0.070 0.930 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -16.185 -5.831 8.653 19.257 hybrid contribution 0.781 1.012 0.125 1.285 sum -15.404 -4.818 8.778 18.372 Atomic orbital electron populations 1.20641 0.87931 1.03778 1.03212 1.22278 0.98377 0.89881 0.97449 1.23629 0.90778 0.99091 0.97049 1.68318 1.08411 1.29648 1.08178 1.22426 0.98591 0.89387 0.94854 1.20576 0.86119 1.03048 1.00687 1.21738 0.90767 0.97483 0.96249 1.60677 1.03810 1.59882 1.07804 1.19555 0.94987 0.90121 0.88666 1.21234 0.91062 1.30781 1.12129 0.91840 1.25008 0.98933 0.95339 0.95421 1.69979 1.35499 1.33212 1.15074 0.86415 0.85222 0.77626 0.77978 1.19620 1.21002 1.21107 1.23655 0.90344 0.99451 0.96957 1.68269 1.08857 1.29372 1.09039 0.90263 0.90330 0.90337 0.81644 0.89869 0.89098 0.92128 0.95147 0.85504 0.95472 0.99494 0.92970 0.81245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 10.19 36.01 0.37 -0.33 16 2 C 0.06 0.67 6.79 -82.41 -0.56 0.11 16 3 C 0.06 0.64 10.88 -17.37 -0.19 0.46 16 4 N -0.43 -6.28 10.06 -9.29 -0.09 -6.37 16 5 C 0.09 1.22 6.18 -82.41 -0.51 0.71 16 6 C -0.07 -0.93 5.89 -27.88 -0.16 -1.09 16 7 C 0.07 1.25 5.55 -3.83 -0.02 1.23 16 8 N -0.69 -15.04 6.49 -115.07 -0.75 -15.79 16 9 C 0.19 5.21 5.44 -4.98 -0.03 5.18 16 10 C -0.51 -14.78 9.32 -34.44 -0.32 -15.10 16 11 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 12 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 14 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 C 0.06 0.70 10.85 -17.38 -0.19 0.51 16 19 N -0.44 -5.63 10.42 -9.29 -0.10 -5.72 16 20 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.08 0.41 8.08 -51.93 -0.42 -0.01 16 22 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 24 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.09 1.15 7.89 -51.93 -0.41 0.74 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.03 0.60 7.96 -51.93 -0.41 0.18 16 28 H 0.33 6.74 8.72 -39.29 -0.34 6.40 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H -0.01 -0.37 8.14 -51.93 -0.42 -0.79 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.17 1.65 7.95 -52.49 -0.42 1.23 16 LS Contribution 281.29 15.07 4.24 4.24 Total: -1.00 -32.71 281.29 -7.20 -39.90 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -4.51 Total: 0.28 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -1.71 Total: -6.85 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.20 Total: -54.43 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.71 -7.20 -39.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591771104.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.752 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds