Wall clock time and date at job start Sun Mar 29 2020 22:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38387 * 119.99804 * 2 1 4 4 N 1.32127 * 119.99334 * 180.25323 * 3 2 1 5 5 C 1.32154 * 120.00011 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99512 * 180.02562 * 5 4 3 7 7 C 1.52991 * 109.47700 * 304.98381 * 6 5 4 8 8 N 1.46892 * 109.47630 * 180.02562 * 7 6 5 9 9 C 1.46896 * 111.00574 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47370 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99777 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00050 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99957 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47322 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47307 * 119.99510 * 14 12 10 17 17 H 1.48499 * 109.47037 * 239.99612 * 14 12 10 18 18 C 1.38337 * 120.00458 * 0.02562 * 5 4 3 19 19 N 1.32124 * 119.99937 * 180.28111 * 2 1 3 20 20 H 1.09000 * 109.46964 * 269.72239 * 1 2 3 21 21 H 1.09003 * 109.47060 * 29.72052 * 1 2 3 22 22 H 1.08996 * 109.47300 * 149.72105 * 1 2 3 23 23 H 1.08001 * 120.00386 * 0.25864 * 3 2 1 24 24 H 1.08996 * 109.46796 * 64.98833 * 6 5 4 25 25 H 1.09003 * 109.46732 * 184.98041 * 6 5 4 26 26 H 1.09001 * 109.46968 * 300.00344 * 7 6 5 27 27 H 1.09001 * 109.47032 * 59.99545 * 7 6 5 28 28 H 1.00901 * 110.99922 * 303.95730 * 8 7 6 29 29 H 1.08997 * 109.46927 * 300.00037 * 9 8 7 30 30 H 1.08998 * 109.46891 * 59.99772 * 9 8 7 31 31 H 0.97003 * 120.00286 * 180.02562 * 13 12 10 32 32 H 1.08001 * 120.00175 * 179.97438 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5202 1.1984 -0.0051 5 6 4.1808 0.0539 -0.0106 6 6 5.6879 0.0539 -0.0158 7 6 6.1939 0.8842 -1.1969 8 7 7.6629 0.8837 -1.2023 9 6 8.1856 1.6727 -2.3258 10 6 9.6922 1.6485 -2.2987 11 1 10.2096 1.1020 -1.5241 12 6 10.4099 2.3248 -3.2622 13 7 9.7798 2.9907 -4.2051 14 14 12.2773 2.2954 -3.2282 15 1 12.7387 1.4823 -2.0744 16 1 12.7861 1.6990 -4.4895 17 1 12.7919 3.6819 -3.0934 18 6 3.4892 -1.1442 -0.0117 19 7 2.1676 -1.1442 -0.0056 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3633 0.8925 -0.5095 22 1 -0.3634 -0.8874 -0.5181 23 1 1.6589 2.1338 0.0042 24 1 6.0544 0.4857 0.9155 25 1 6.0509 -0.9697 -0.1092 26 1 5.8274 0.4524 -2.1282 27 1 5.8309 1.9078 -1.1035 28 1 8.0278 1.2194 -0.3235 29 1 7.8325 1.2461 -3.2646 30 1 7.8367 2.7018 -2.2404 31 1 10.2848 3.4663 -4.8832 32 1 4.0291 -2.0795 -0.0167 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591771104.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:22 Heat of formation + Delta-G solvation = 7.679620 kcal Electronic energy + Delta-G solvation = -13916.244953 eV Core-core repulsion = 11489.235947 eV Total energy + Delta-G solvation = -2427.009007 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.13303 -37.69747 -35.82675 -34.74698 -33.99927 -31.79027 -29.01795 -27.05393 -25.70638 -24.32518 -23.26245 -22.32682 -18.82774 -18.49460 -17.29655 -16.79777 -16.63932 -16.30863 -16.18947 -15.23447 -14.95826 -14.26101 -13.99740 -13.79532 -13.55702 -13.41162 -13.16151 -12.84971 -12.64434 -12.54288 -12.43711 -12.25631 -12.07552 -11.91880 -11.30605 -10.68039 -10.01750 -9.95484 -9.18229 -8.23372 -6.35308 -0.21843 0.13663 1.42133 1.43028 1.57347 2.40161 2.64963 3.05893 3.10061 3.25270 3.40872 3.60591 3.95181 4.06652 4.15075 4.28813 4.42879 4.56861 4.67647 4.77479 4.85898 4.97924 5.02004 5.10249 5.15623 5.24281 5.48693 5.60578 5.99213 6.32722 6.39364 6.69315 6.82250 6.87682 7.35973 8.88881 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.077997 B = 0.004167 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.902010 B = 6717.602112 C = 6900.995808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.064 3.936 3 C 0.047 3.953 4 N -0.464 5.464 5 C 0.066 3.934 6 C -0.051 4.051 7 C 0.074 3.926 8 N -0.685 5.685 9 C 0.206 3.794 10 C -0.535 4.535 11 H 0.069 0.931 12 C -0.002 4.002 13 N -0.937 5.937 14 Si 0.978 3.022 15 H -0.259 1.259 16 H -0.278 1.278 17 H -0.278 1.278 18 C 0.056 3.944 19 N -0.459 5.459 20 H 0.096 0.904 21 H 0.101 0.899 22 H 0.078 0.922 23 H 0.195 0.805 24 H 0.090 0.910 25 H 0.109 0.891 26 H 0.047 0.953 27 H 0.014 0.986 28 H 0.338 0.662 29 H -0.003 1.003 30 H -0.042 1.042 31 H 0.265 0.735 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.476 -6.017 10.163 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.077 4.077 3 C -0.114 4.114 4 N -0.179 5.179 5 C -0.074 4.074 6 C -0.089 4.089 7 C -0.056 4.056 8 N -0.315 5.315 9 C 0.079 3.921 10 C -0.573 4.573 11 H 0.087 0.913 12 C -0.200 4.200 13 N -0.577 5.577 14 Si 0.802 3.198 15 H -0.183 1.183 16 H -0.204 1.204 17 H -0.203 1.203 18 C -0.103 4.103 19 N -0.175 5.175 20 H 0.114 0.886 21 H 0.120 0.880 22 H 0.097 0.903 23 H 0.212 0.788 24 H 0.108 0.892 25 H 0.127 0.873 26 H 0.066 0.934 27 H 0.033 0.967 28 H 0.156 0.844 29 H 0.016 0.984 30 H -0.024 1.024 31 H 0.074 0.926 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -16.399 -6.524 9.675 20.127 hybrid contribution 0.690 1.243 -0.185 1.434 sum -15.709 -5.281 9.490 19.097 Atomic orbital electron populations 1.20780 0.85025 1.04936 1.04561 1.22929 1.00238 0.89244 0.95245 1.24148 0.90000 1.00702 0.96535 1.68253 1.10085 1.30469 1.09053 1.22324 0.98168 0.89994 0.96865 1.20396 0.86829 1.03039 0.98659 1.21699 0.88477 0.97493 0.97903 1.60546 1.05945 1.58292 1.06742 1.19217 0.94788 0.88840 0.89305 1.21589 0.91940 1.31190 1.12602 0.91270 1.26034 1.04702 0.94564 0.94737 1.70114 1.37857 1.33881 1.15839 0.85205 0.78140 0.78023 0.78432 1.18323 1.20374 1.20329 1.23960 0.90532 0.99801 0.95995 1.68375 1.08978 1.30222 1.09929 0.88598 0.88029 0.90339 0.78815 0.89185 0.87293 0.93436 0.96727 0.84442 0.98450 1.02422 0.92594 0.79010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.19 71.24 0.73 -0.38 16 2 C 0.06 1.31 6.79 42.55 0.29 1.60 16 3 C 0.05 1.03 10.88 84.68 0.92 1.95 16 4 N -0.46 -13.32 10.06 -183.29 -1.84 -15.16 16 5 C 0.07 1.79 6.18 42.54 0.26 2.06 16 6 C -0.05 -1.40 5.89 29.85 0.18 -1.23 16 7 C 0.07 2.80 5.55 86.30 0.48 3.27 16 8 N -0.68 -30.21 6.49 -517.97 -3.36 -33.57 16 9 C 0.21 11.51 5.44 85.56 0.47 11.98 16 10 C -0.54 -31.11 9.32 25.60 0.24 -30.87 16 11 H 0.07 3.86 7.81 -2.91 -0.02 3.83 16 12 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 13 N -0.94 -57.81 13.29 21.45 0.28 -57.52 16 14 Si 0.98 44.67 29.54 68.60 2.03 46.69 16 15 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 18 C 0.06 1.33 10.85 84.67 0.92 2.25 16 19 N -0.46 -11.09 10.42 -183.30 -1.91 -13.00 16 20 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 21 H 0.10 0.73 8.08 -2.39 -0.02 0.71 16 22 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.20 2.87 8.06 -2.91 -0.02 2.84 16 24 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.11 2.60 7.89 -2.39 -0.02 2.58 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.01 0.59 7.96 -2.39 -0.02 0.57 16 28 H 0.34 13.87 8.72 -89.69 -0.78 13.09 16 29 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H -0.04 -2.53 8.14 -2.39 -0.02 -2.55 16 31 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 32 H 0.19 3.41 7.95 -2.91 -0.02 3.38 16 Total: -1.00 -71.13 281.29 0.46 -70.68 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.32 Total: 10.93 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 4.94 Total: -9.05 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -6.83 Total: -119.25 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -71.13 0.46 -70.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591771104.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.355 kcal (2) G-P(sol) polarization free energy of solvation -71.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds