Wall clock time and date at job start Sun Mar 29 2020 21:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 119.99914 * 2 1 4 4 H 1.48493 * 109.47193 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47070 * 300.00231 * 3 2 1 6 6 H 1.48503 * 109.46808 * 59.99817 * 3 2 1 7 7 C 1.37877 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99688 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99816 * 359.97438 * 7 2 1 10 10 N 1.46908 * 109.47144 * 179.97438 * 9 7 2 11 11 C 1.46895 * 111.00045 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.46891 * 180.02562 * 11 10 9 13 13 C 1.38258 * 119.99734 * 260.01839 * 12 11 10 14 14 C 1.38213 * 120.00082 * 179.97438 * 13 12 11 15 15 C 1.38263 * 119.99986 * 0.02562 * 14 13 12 16 16 C 1.38215 * 119.99577 * 359.70149 * 15 14 13 17 17 C 1.38209 * 120.00423 * 79.99927 * 12 11 10 18 18 C 1.50701 * 119.99797 * 0.02562 * 17 12 11 19 19 O 1.42903 * 109.46878 * 179.97438 * 18 17 12 20 20 H 0.96995 * 120.00371 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47341 * 60.00869 * 9 7 2 22 22 H 1.09004 * 109.47784 * 300.00175 * 9 7 2 23 23 H 1.00901 * 110.99543 * 56.04793 * 10 9 7 24 24 H 1.09000 * 109.47304 * 60.00333 * 11 10 9 25 25 H 1.09002 * 109.47183 * 300.00049 * 11 10 9 26 26 H 1.08002 * 120.00011 * 0.02562 * 13 12 11 27 27 H 1.07994 * 120.00169 * 180.02562 * 14 13 12 28 28 H 1.07998 * 119.99986 * 179.97438 * 15 14 13 29 29 H 1.08004 * 119.99524 * 180.29857 * 16 15 14 30 30 H 1.09002 * 109.47060 * 299.99979 * 18 17 12 31 31 H 1.09001 * 109.47380 * 60.00066 * 18 17 12 32 32 H 0.96700 * 113.99509 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5055 -4.9070 -0.0024 12 6 2.5151 -6.0258 -0.0030 13 6 2.8240 -6.6774 -1.1827 14 6 3.7503 -7.7032 -1.1834 15 6 4.3676 -8.0781 -0.0044 16 6 4.0629 -7.4229 1.1738 17 6 3.1324 -6.4003 1.1754 18 6 2.7956 -5.6902 2.4612 19 8 3.5575 -6.2542 3.5306 20 1 -0.4850 0.8400 0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8412 -3.5489 0.7792 24 1 0.8802 -4.9808 -0.8922 25 1 0.8810 -4.9821 0.8878 26 1 2.3421 -6.3843 -2.1037 27 1 3.9919 -8.2120 -2.1049 28 1 5.0911 -8.8800 -0.0049 29 1 4.5487 -7.7126 2.0939 30 1 3.0335 -4.6309 2.3643 31 1 1.7325 -5.8059 2.6725 32 1 3.3915 -5.8443 4.3905 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592429581.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:59 Heat of formation + Delta-G solvation = -55.812949 kcal Electronic energy + Delta-G solvation = -14434.973586 eV Core-core repulsion = 11972.918584 eV Total energy + Delta-G solvation = -2462.055002 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.63871 -37.55845 -37.09970 -34.74752 -32.61076 -32.08552 -28.92686 -27.14840 -25.77141 -23.48415 -22.82675 -21.58324 -18.67363 -18.39682 -17.43080 -16.78941 -16.36310 -16.07245 -15.85883 -15.53626 -14.99929 -14.70307 -14.60938 -13.95055 -13.46484 -13.25375 -13.11269 -12.99280 -12.68043 -12.60650 -12.13359 -11.85325 -11.67135 -11.31396 -11.26459 -10.68873 -9.72196 -9.52486 -9.14784 -8.24577 -6.35975 0.39922 0.51799 1.40431 1.41533 1.55372 2.38916 2.81616 3.08865 3.24115 3.67296 3.88430 3.98209 4.11997 4.18741 4.35137 4.39591 4.44186 4.63034 4.72760 4.87924 5.04322 5.10694 5.19471 5.23050 5.57347 5.60127 5.63705 5.74548 5.98194 6.13087 6.38972 6.64763 6.81351 6.84417 7.35148 8.87097 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035419 B = 0.006074 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.343910 B = 4608.653282 C = 4942.817660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.208 3.792 10 N -0.682 5.682 11 C 0.096 3.904 12 C -0.083 4.083 13 C -0.115 4.115 14 C -0.121 4.121 15 C -0.126 4.126 16 C -0.109 4.109 17 C -0.103 4.103 18 C 0.119 3.881 19 O -0.577 6.577 20 H 0.266 0.734 21 H 0.003 0.997 22 H -0.034 1.034 23 H 0.332 0.668 24 H 0.071 0.929 25 H 0.031 0.969 26 H 0.128 0.872 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.134 0.866 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.699 -14.335 3.111 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.575 4.575 8 H 0.080 0.920 9 C 0.080 3.920 10 N -0.313 5.313 11 C -0.033 4.033 12 C -0.084 4.084 13 C -0.134 4.134 14 C -0.139 4.139 15 C -0.144 4.144 16 C -0.127 4.127 17 C -0.103 4.103 18 C 0.041 3.959 19 O -0.385 6.385 20 H 0.075 0.925 21 H 0.021 0.979 22 H -0.017 1.017 23 H 0.150 0.850 24 H 0.089 0.911 25 H 0.049 0.951 26 H 0.146 0.854 27 H 0.167 0.833 28 H 0.167 0.833 29 H 0.152 0.848 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 6.839 -14.574 1.952 16.217 hybrid contribution -0.693 1.393 1.287 2.019 sum 6.146 -13.181 3.238 14.899 Atomic orbital electron populations 1.70083 1.07749 1.28038 1.51414 1.25927 0.95781 1.03300 0.94468 0.85284 0.78852 0.78289 0.77869 1.18847 1.20323 1.20089 1.21539 0.93723 0.91417 1.50797 0.91993 1.19254 0.90577 0.88601 0.93567 1.60638 1.20356 1.00947 1.49377 1.20862 0.94049 0.87794 1.00601 1.19612 0.98425 0.96776 0.93564 1.21202 0.98682 0.96386 0.97131 1.21457 0.96150 0.96911 0.99344 1.21493 1.00289 1.00440 0.92149 1.21098 0.96986 0.95349 0.99260 1.19746 0.98583 0.98288 0.93721 1.20811 0.94608 0.95221 0.85239 1.86341 1.67868 1.64009 1.20304 0.92513 0.97885 1.01666 0.84999 0.91073 0.95132 0.85391 0.83338 0.83321 0.84815 0.93049 0.92066 0.74908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.54 -30.86 9.32 25.60 0.24 -30.62 16 8 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 9 C 0.21 11.21 5.44 85.55 0.47 11.67 16 10 N -0.68 -30.27 6.48 -521.98 -3.38 -33.65 16 11 C 0.10 3.55 5.27 85.56 0.45 4.00 16 12 C -0.08 -2.70 5.39 -19.87 -0.11 -2.80 16 13 C -0.12 -3.32 9.67 22.27 0.22 -3.10 16 14 C -0.12 -2.84 10.05 22.27 0.22 -2.62 16 15 C -0.13 -2.89 10.05 22.27 0.22 -2.66 16 16 C -0.11 -2.94 9.38 22.27 0.21 -2.73 16 17 C -0.10 -3.12 5.87 -19.87 -0.12 -3.24 16 18 C 0.12 3.31 6.22 71.24 0.44 3.76 16 19 O -0.58 -13.70 12.14 -148.98 -1.81 -15.51 16 20 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 21 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 22 H -0.03 -1.96 8.14 -2.38 -0.02 -1.98 16 23 H 0.33 14.17 6.91 -89.69 -0.62 13.55 16 24 H 0.07 2.65 8.01 -2.39 -0.02 2.63 16 25 H 0.03 1.11 7.06 -2.39 -0.02 1.09 16 26 H 0.13 3.45 8.04 -2.91 -0.02 3.43 16 27 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 28 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 29 H 0.13 3.39 7.01 -2.91 -0.02 3.37 16 30 H 0.05 1.55 6.44 -2.39 -0.02 1.53 16 31 H 0.06 1.64 7.55 -2.39 -0.02 1.62 16 32 H 0.40 5.75 9.12 -74.06 -0.68 5.08 16 Total: -1.00 -66.92 273.52 -0.34 -67.26 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -0.17 Total: 19.16 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 2.71 Total: -27.68 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -3.10 Total: -89.53 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -1.81 Total: -15.51 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -66.92 -0.34 -67.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592429581.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.445 kcal (2) G-P(sol) polarization free energy of solvation -66.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds