Wall clock time and date at job start Sun Mar 29 2020 21:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99764 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00284 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00107 * 3 2 1 7 7 C 1.38956 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99983 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00025 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99970 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99953 * 0.27300 * 10 9 7 12 12 C 1.50706 * 119.99766 * 179.97438 * 10 9 7 13 13 H 1.09003 * 109.45594 * 60.00147 * 12 10 9 14 14 C 1.53033 * 109.46020 * 300.02696 * 12 10 9 15 15 C 1.53397 * 109.54749 * 239.98178 * 14 12 10 16 16 H 1.09004 * 110.75752 * 177.07352 * 15 14 12 17 17 C 1.52149 * 107.84862 * 55.70451 * 15 14 12 18 18 C 1.33086 * 113.76010 * 301.71951 * 17 15 14 19 19 C 1.52121 * 113.75020 * 0.02562 * 18 17 15 20 20 H 1.08998 * 110.75632 * 179.64957 * 19 18 17 21 21 C 1.53498 * 107.68369 * 301.58654 * 19 18 17 22 22 C 1.53492 * 108.31836 * 298.72688 * 15 14 12 23 23 H 0.97005 * 120.00019 * 359.97438 * 1 2 3 24 24 H 0.96999 * 119.99986 * 359.97438 * 9 7 2 25 25 H 1.09002 * 109.45483 * 0.02562 * 14 12 10 26 26 H 1.08999 * 109.45646 * 119.95838 * 14 12 10 27 27 H 1.08007 * 123.12053 * 121.71651 * 17 15 14 28 28 H 1.08000 * 123.12315 * 179.97438 * 18 17 15 29 29 H 1.09003 * 109.46034 * 175.85692 * 21 19 18 30 30 H 1.08996 * 109.45907 * 295.83716 * 21 19 18 31 31 H 1.08996 * 109.46134 * 180.58531 * 22 15 14 32 32 H 1.09003 * 109.46085 * 300.55055 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0016 10 6 1.9973 -3.5579 -0.0016 11 8 3.2101 -3.5579 0.0043 12 6 1.2437 -4.8630 -0.0022 13 1 0.6174 -4.9203 -0.8925 14 6 0.3629 -4.9437 1.2467 15 6 0.7693 -6.1636 2.0833 16 1 0.1885 -6.2111 3.0045 17 6 2.2554 -6.0461 2.3878 18 6 3.0214 -5.9760 1.3017 19 6 2.2408 -6.0281 -0.0029 20 1 2.9130 -5.9611 -0.8583 21 6 1.4466 -7.3416 -0.0189 22 6 0.5497 -7.4245 1.2360 23 1 -0.4850 0.8401 0.0004 24 1 0.3534 -2.3907 -0.0016 25 1 0.4897 -4.0379 1.8396 26 1 -0.6813 -5.0391 0.9491 27 1 2.6519 -6.0219 3.3921 28 1 4.0971 -5.8891 1.3428 29 1 0.8185 -7.3754 -0.9091 30 1 2.1381 -8.1840 -0.0300 31 1 0.8234 -8.3049 1.8174 32 1 -0.4997 -7.4909 0.9489 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593444275.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:33 Heat of formation + Delta-G solvation = -35.792624 kcal Electronic energy + Delta-G solvation = -15327.338587 eV Core-core repulsion = 12866.151731 eV Total energy + Delta-G solvation = -2461.186856 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.35197 -37.40661 -33.89544 -31.49535 -30.64061 -30.39116 -30.20221 -25.04133 -22.71436 -21.79091 -21.06368 -19.06895 -17.87231 -16.47423 -16.04964 -15.69938 -15.02830 -14.46425 -13.80525 -13.67481 -13.17508 -12.48771 -12.20104 -11.90453 -11.79480 -11.76264 -11.57410 -11.46098 -11.13681 -10.98624 -10.36750 -10.23814 -10.08161 -9.75971 -9.53091 -9.44881 -8.53230 -8.16550 -7.90220 -6.37264 -3.77698 2.74340 3.20082 3.28138 3.34271 3.98822 4.20743 4.77749 4.95672 4.97588 5.24501 5.31551 5.43554 5.52714 5.58147 5.69623 5.77077 5.88499 5.92085 5.99689 6.12033 6.27190 6.31146 6.43733 6.47056 6.53805 6.63820 6.68323 7.08759 7.41903 7.59029 8.11269 8.66990 9.22669 9.61398 10.13198 10.80629 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.052328 B = 0.007533 C = 0.007224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.958462 B = 3716.244178 C = 3874.918844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.928 3.072 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.450 3.550 11 O -0.590 6.590 12 C -0.094 4.094 13 H 0.082 0.918 14 C -0.106 4.106 15 C -0.056 4.056 16 H 0.074 0.926 17 C -0.192 4.192 18 C -0.110 4.110 19 C -0.040 4.040 20 H 0.083 0.917 21 C -0.112 4.112 22 C -0.110 4.110 23 H 0.271 0.729 24 H 0.392 0.608 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.639 -11.752 2.016 12.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.428 4.428 8 H 0.119 0.881 9 N -0.200 5.200 10 C 0.236 3.764 11 O -0.475 6.475 12 C -0.115 4.115 13 H 0.100 0.900 14 C -0.144 4.144 15 C -0.075 4.075 16 H 0.092 0.908 17 C -0.210 4.210 18 C -0.128 4.128 19 C -0.058 4.058 20 H 0.101 0.899 21 C -0.149 4.149 22 C -0.148 4.148 23 H 0.080 0.920 24 H 0.225 0.775 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.975 -11.569 2.011 11.782 hybrid contribution -0.177 1.062 0.028 1.077 sum -1.151 -10.507 2.038 10.764 Atomic orbital electron populations 1.69616 1.05900 1.28026 1.50881 1.25244 0.95615 0.99634 0.97495 0.85884 0.79238 0.80974 0.78344 1.20452 1.20947 1.19489 1.19709 0.93325 0.82408 1.47404 0.88056 1.41881 1.09168 1.04586 1.64374 1.19875 0.88177 0.84802 0.83581 1.90487 1.13943 1.87233 1.55831 1.21319 0.97010 0.94299 0.98921 0.90027 1.21725 0.98352 0.98545 0.95817 1.20581 0.94464 0.94710 0.97736 0.90776 1.23577 0.94647 1.05036 0.97759 1.23613 0.98620 0.96674 0.93935 1.20401 0.95345 0.92734 0.97356 0.89860 1.21905 0.98106 0.97090 0.97817 1.21911 0.99221 0.97256 0.96383 0.91953 0.77459 0.90988 0.91623 0.87015 0.86734 0.91957 0.92019 0.92287 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.99 13.05 55.50 0.72 -24.27 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.43 29.55 -169.99 -5.02 16.40 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.51 9.68 -14.93 -0.14 -8.66 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.69 5.03 -10.96 -0.06 -14.75 16 10 C 0.45 10.89 6.57 -10.98 -0.07 10.81 16 11 O -0.59 -16.14 14.53 5.55 0.08 -16.06 16 12 C -0.09 -1.74 2.52 -91.57 -0.23 -1.97 16 13 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 14 C -0.11 -1.77 5.16 -26.51 -0.14 -1.90 16 15 C -0.06 -0.82 3.53 -90.59 -0.32 -1.14 16 16 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 17 C -0.19 -3.08 9.83 -35.38 -0.35 -3.43 16 18 C -0.11 -1.92 8.25 -35.40 -0.29 -2.22 16 19 C -0.04 -0.66 2.69 -90.63 -0.24 -0.91 16 20 H 0.08 1.47 8.06 -51.93 -0.42 1.06 16 21 C -0.11 -1.46 5.70 -25.70 -0.15 -1.61 16 22 C -0.11 -1.36 5.80 -25.71 -0.15 -1.51 16 23 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 24 H 0.39 9.84 7.80 -40.82 -0.32 9.52 16 25 H 0.07 1.37 7.44 -51.93 -0.39 0.99 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 28 H 0.11 2.02 8.06 -52.49 -0.42 1.60 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 260.59 15.07 3.93 3.93 Total: -1.00 -30.62 260.59 -6.96 -37.58 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -4.44 Total: 9.20 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -2.18 Total: -12.03 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.67 Total: -39.02 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.08 Total: -16.06 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.62 -6.96 -37.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593444275.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.790 kcal (2) G-P(sol) polarization free energy of solvation -30.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds