Wall clock time and date at job start Sun Mar 29 2020 21:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99764 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00284 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00107 * 3 2 1 7 7 C 1.38956 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99983 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00025 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99970 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99953 * 0.27300 * 10 9 7 12 12 C 1.50706 * 119.99766 * 179.97438 * 10 9 7 13 13 H 1.09003 * 109.45594 * 60.00147 * 12 10 9 14 14 C 1.53033 * 109.46020 * 300.02696 * 12 10 9 15 15 C 1.53397 * 109.54749 * 239.98178 * 14 12 10 16 16 H 1.09004 * 110.75752 * 177.07352 * 15 14 12 17 17 C 1.52149 * 107.84862 * 55.70451 * 15 14 12 18 18 C 1.33086 * 113.76010 * 301.71951 * 17 15 14 19 19 C 1.52121 * 113.75020 * 0.02562 * 18 17 15 20 20 H 1.08998 * 110.75632 * 179.64957 * 19 18 17 21 21 C 1.53498 * 107.68369 * 301.58654 * 19 18 17 22 22 C 1.53492 * 108.31836 * 298.72688 * 15 14 12 23 23 H 0.97005 * 120.00019 * 359.97438 * 1 2 3 24 24 H 0.96999 * 119.99986 * 359.97438 * 9 7 2 25 25 H 1.09002 * 109.45483 * 0.02562 * 14 12 10 26 26 H 1.08999 * 109.45646 * 119.95838 * 14 12 10 27 27 H 1.08007 * 123.12053 * 121.71651 * 17 15 14 28 28 H 1.08000 * 123.12315 * 179.97438 * 18 17 15 29 29 H 1.09003 * 109.46034 * 175.85692 * 21 19 18 30 30 H 1.08996 * 109.45907 * 295.83716 * 21 19 18 31 31 H 1.08996 * 109.46134 * 180.58531 * 22 15 14 32 32 H 1.09003 * 109.46085 * 300.55055 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0016 10 6 1.9973 -3.5579 -0.0016 11 8 3.2101 -3.5579 0.0043 12 6 1.2437 -4.8630 -0.0022 13 1 0.6174 -4.9203 -0.8925 14 6 0.3629 -4.9437 1.2467 15 6 0.7693 -6.1636 2.0833 16 1 0.1885 -6.2111 3.0045 17 6 2.2554 -6.0461 2.3878 18 6 3.0214 -5.9760 1.3017 19 6 2.2408 -6.0281 -0.0029 20 1 2.9130 -5.9611 -0.8583 21 6 1.4466 -7.3416 -0.0189 22 6 0.5497 -7.4245 1.2360 23 1 -0.4850 0.8401 0.0004 24 1 0.3534 -2.3907 -0.0016 25 1 0.4897 -4.0379 1.8396 26 1 -0.6813 -5.0391 0.9491 27 1 2.6519 -6.0219 3.3921 28 1 4.0971 -5.8891 1.3428 29 1 0.8185 -7.3754 -0.9091 30 1 2.1381 -8.1840 -0.0300 31 1 0.8234 -8.3049 1.8174 32 1 -0.4997 -7.4909 0.9489 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593444275.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:32 Heat of formation + Delta-G solvation = -54.909799 kcal Electronic energy + Delta-G solvation = -15328.167570 eV Core-core repulsion = 12866.151731 eV Total energy + Delta-G solvation = -2462.015839 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.75045 -39.23513 -35.97339 -33.45178 -31.96284 -31.71610 -31.51450 -27.05819 -24.17321 -23.04216 -22.27010 -20.88466 -19.93401 -17.90411 -17.66745 -16.96632 -16.78598 -16.08350 -15.49176 -15.45126 -14.83260 -13.86916 -13.74404 -13.48643 -13.08151 -13.04635 -13.03197 -12.97978 -12.76810 -12.44879 -12.27948 -12.11373 -11.51797 -11.38185 -10.97573 -10.70123 -10.18332 -10.01498 -9.73875 -8.47284 -5.96011 1.36052 1.38916 1.43538 1.52014 2.07832 2.28727 3.17310 3.22125 3.68228 3.79832 3.91670 4.19763 4.27346 4.43002 4.49051 4.51821 4.60824 4.63551 4.68042 4.88842 5.12669 5.15753 5.22021 5.22251 5.29268 5.39162 5.40980 5.45333 5.81805 6.00233 6.12199 6.59635 7.12035 7.57369 8.13126 8.70305 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.052328 B = 0.007533 C = 0.007224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.958462 B = 3716.244178 C = 3874.918844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.275 1.275 7 C -0.336 4.336 8 H 0.076 0.924 9 N -0.574 5.574 10 C 0.445 3.555 11 O -0.628 6.628 12 C -0.088 4.088 13 H 0.100 0.900 14 C -0.104 4.104 15 C -0.055 4.055 16 H 0.096 0.904 17 C -0.187 4.187 18 C -0.143 4.143 19 C -0.040 4.040 20 H 0.063 0.937 21 C -0.106 4.106 22 C -0.104 4.104 23 H 0.278 0.722 24 H 0.395 0.605 25 H 0.040 0.960 26 H 0.094 0.906 27 H 0.121 0.879 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.206 -12.703 2.314 13.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.200 1.200 7 C -0.465 4.465 8 H 0.094 0.906 9 N -0.210 5.210 10 C 0.233 3.767 11 O -0.515 6.515 12 C -0.109 4.109 13 H 0.118 0.882 14 C -0.141 4.141 15 C -0.073 4.073 16 H 0.114 0.886 17 C -0.205 4.205 18 C -0.161 4.161 19 C -0.059 4.059 20 H 0.081 0.919 21 C -0.143 4.143 22 C -0.141 4.141 23 H 0.087 0.913 24 H 0.229 0.771 25 H 0.059 0.941 26 H 0.113 0.887 27 H 0.139 0.861 28 H 0.115 0.885 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.565 -12.535 2.307 13.001 hybrid contribution 0.348 1.363 -0.045 1.408 sum -2.218 -11.172 2.262 11.612 Atomic orbital electron populations 1.69675 1.06789 1.29251 1.50412 1.26031 0.96563 1.02343 0.96326 0.84948 0.77834 0.76958 0.78703 1.19522 1.19343 1.19982 1.19668 0.92602 0.84261 1.50007 0.90614 1.41947 1.09209 1.04695 1.65123 1.20980 0.88116 0.86247 0.81375 1.90455 1.15992 1.88110 1.56981 1.21363 0.97323 0.91288 1.00946 0.88155 1.21720 0.99497 0.98339 0.94593 1.20686 0.93087 0.94778 0.98774 0.88568 1.23924 0.95935 1.02878 0.97740 1.23658 0.98281 0.98980 0.95171 1.20416 0.95102 0.94205 0.96216 0.91871 1.21902 0.98294 0.94845 0.99279 1.21926 1.00343 0.96395 0.95473 0.91290 0.77104 0.94140 0.88728 0.86130 0.88454 0.90287 0.90789 0.90555 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.73 13.05 21.66 0.28 -50.44 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 3 Si 0.99 43.95 29.55 68.60 2.03 45.98 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.34 -19.73 9.68 84.04 0.81 -18.91 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.57 -30.67 5.03 -306.98 -1.54 -32.21 16 10 C 0.44 22.13 6.57 87.66 0.58 22.70 16 11 O -0.63 -35.93 14.53 -3.05 -0.04 -35.97 16 12 C -0.09 -3.19 2.52 -11.41 -0.03 -3.22 16 13 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 14 C -0.10 -3.25 5.16 30.74 0.16 -3.09 16 15 C -0.05 -1.42 3.53 -10.78 -0.04 -1.46 16 16 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 17 C -0.19 -5.77 9.83 25.00 0.25 -5.53 16 18 C -0.14 -5.02 8.25 24.99 0.21 -4.81 16 19 C -0.04 -1.34 2.69 -10.80 -0.03 -1.37 16 20 H 0.06 2.29 8.06 -2.39 -0.02 2.27 16 21 C -0.11 -2.45 5.70 31.26 0.18 -2.27 16 22 C -0.10 -2.11 5.80 31.26 0.18 -1.93 16 23 H 0.28 14.27 8.31 -92.70 -0.77 13.50 16 24 H 0.40 20.18 7.80 -92.71 -0.72 19.46 16 25 H 0.04 1.52 7.44 -2.39 -0.02 1.50 16 26 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.12 3.42 8.06 -2.91 -0.02 3.39 16 28 H 0.10 3.64 8.06 -2.91 -0.02 3.62 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -67.52 260.59 3.84 -63.68 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.39 Total: 29.10 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 2.73 Total: -20.13 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -1.26 Total: -82.66 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.04 Total: -35.97 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -67.52 3.84 -63.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593444275.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.773 kcal (2) G-P(sol) polarization free energy of solvation -67.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds