Wall clock time and date at job start Sun Mar 29 2020 22:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47136 * 2 1 4 4 H 1.08996 * 109.46802 * 177.62698 * 3 2 1 5 5 C 1.50700 * 109.46998 * 57.62862 * 3 2 1 6 6 H 1.08005 * 119.99643 * 240.00053 * 5 3 2 7 7 C 1.37873 * 120.00095 * 59.99734 * 5 3 2 8 8 N 1.31510 * 120.00178 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99834 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47115 * 60.00091 * 9 7 5 11 11 H 1.48501 * 109.47152 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47384 * 300.00072 * 9 7 5 13 13 N 1.46899 * 109.47210 * 297.62743 * 3 2 1 14 14 C 1.46906 * 110.99760 * 274.13793 * 13 3 2 15 15 C 1.50703 * 109.46772 * 184.25627 * 14 13 3 16 16 N 1.31791 * 119.12609 * 269.72991 * 15 14 13 17 17 C 1.32337 * 120.81766 * 179.76371 * 16 15 14 18 18 C 1.38587 * 119.10410 * 0.50310 * 17 16 15 19 19 C 1.38596 * 118.40346 * 359.75032 * 18 17 16 20 20 N 1.31800 * 119.11799 * 90.00029 * 15 14 13 21 21 H 1.08997 * 109.47150 * 294.77382 * 1 2 3 22 22 H 1.09005 * 109.47126 * 54.77023 * 1 2 3 23 23 H 1.08994 * 109.47275 * 174.77411 * 1 2 3 24 24 H 1.08997 * 109.46617 * 240.00098 * 2 1 3 25 25 H 1.08993 * 109.47017 * 120.00383 * 2 1 3 26 26 H 0.97005 * 120.00106 * 179.97438 * 8 7 5 27 27 H 1.00896 * 111.00011 * 150.18391 * 13 3 2 28 28 H 1.08994 * 109.47252 * 304.25763 * 14 13 3 29 29 H 1.08999 * 109.47139 * 64.26385 * 14 13 3 30 30 H 1.08002 * 120.44216 * 180.23259 * 17 16 15 31 31 H 1.07999 * 120.80431 * 179.77615 * 18 17 16 32 32 H 1.08004 * 120.45202 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4427 0.0425 5 6 1.4902 2.1696 1.2000 6 1 0.8739 3.0461 1.0646 7 6 1.7740 1.7160 2.4707 8 7 2.5249 0.6490 2.6355 9 14 1.0931 2.6178 3.9581 10 1 -0.3908 2.6180 3.9003 11 1 1.5406 1.9350 5.1986 12 1 1.5887 4.0177 3.9580 13 7 1.5977 2.1183 -1.2271 14 6 2.5364 1.8735 -2.3303 15 6 2.1076 2.6645 -3.5393 16 7 1.2848 2.1124 -4.4083 17 6 0.8831 2.7781 -5.4792 18 6 1.3476 4.0675 -5.6849 19 6 2.2156 4.6123 -4.7517 20 7 2.5697 3.8880 -3.7022 21 1 -0.3633 0.4306 0.9331 22 1 -0.3634 0.5928 -0.8395 23 1 -0.3633 -1.0233 -0.0936 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 2.7249 0.3300 3.5295 27 1 1.4736 3.1072 -1.0705 28 1 3.5378 2.1823 -2.0306 29 1 2.5413 0.8112 -2.5743 30 1 0.2058 2.3211 -6.1855 31 1 1.0404 4.6344 -6.5513 32 1 2.5976 5.6145 -4.8791 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594008279.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:33 Heat of formation + Delta-G solvation = 45.356395 kcal Electronic energy + Delta-G solvation = -14681.681203 eV Core-core repulsion = 12256.305984 eV Total energy + Delta-G solvation = -2425.375219 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.83281 -36.32166 -33.56047 -33.33817 -31.62261 -30.26453 -27.04735 -24.95272 -24.41812 -23.08904 -22.03343 -19.00019 -17.40122 -17.10282 -16.15313 -15.20762 -14.96994 -14.63870 -14.06248 -13.58410 -13.42904 -13.17697 -12.61114 -12.12592 -11.74992 -11.42832 -10.92878 -10.84013 -10.71439 -10.60711 -10.35102 -10.08901 -9.71387 -9.46646 -9.28262 -9.07406 -8.75277 -8.43967 -7.26588 -5.98972 -4.04072 0.98938 1.21006 3.33535 3.37903 3.40795 3.86970 4.13690 4.30399 4.44102 4.63130 5.01599 5.14756 5.32013 5.46431 5.57991 5.72693 6.15525 6.19913 6.51607 6.59577 6.77911 6.91550 7.13408 7.29772 7.31846 7.53648 7.78377 7.81741 7.86791 8.25166 8.30870 8.37953 8.64871 9.03041 9.60074 11.07146 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041876 B = 0.006586 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.482999 B = 4250.126250 C = 4549.774901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.217 3.783 4 H 0.004 0.996 5 C -0.513 4.513 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.674 5.674 14 C 0.124 3.876 15 C 0.337 3.663 16 N -0.502 5.502 17 C 0.145 3.855 18 C -0.244 4.244 19 C 0.145 3.855 20 N -0.517 5.517 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.013 0.987 24 H 0.012 0.988 25 H 0.086 0.914 26 H 0.261 0.739 27 H 0.333 0.667 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.164 0.836 31 H 0.143 0.857 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.309 4.842 -13.809 14.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.110 3.890 4 H 0.022 0.978 5 C -0.551 4.551 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.306 5.306 14 C -0.007 4.007 15 C 0.070 3.930 16 N -0.216 5.216 17 C -0.022 4.022 18 C -0.266 4.266 19 C -0.021 4.021 20 N -0.231 5.231 21 H 0.070 0.930 22 H 0.066 0.934 23 H 0.032 0.968 24 H 0.031 0.969 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.150 0.850 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.181 0.819 31 H 0.160 0.840 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.351 3.665 -13.023 13.596 hybrid contribution 0.042 1.619 0.202 1.632 sum -1.309 5.284 -12.821 13.929 Atomic orbital electron populations 1.21432 0.97478 0.97170 1.01530 1.21425 0.95188 0.97995 0.99412 1.19180 0.93579 0.91710 0.84503 0.97814 1.21112 1.31759 1.11964 0.90288 0.92399 1.24858 0.95080 0.95019 0.98767 1.69877 1.37384 1.23129 1.22321 0.86628 0.79446 0.79758 0.81978 1.20238 1.21321 1.20388 1.60798 1.46443 1.16346 1.07035 1.20733 0.94969 0.98157 0.86849 1.23534 0.87429 0.87820 0.94214 1.68358 1.11693 1.38383 1.03118 1.23266 0.94429 0.91043 0.93437 1.22839 1.02257 0.98673 1.02851 1.23213 0.91370 0.99208 0.88341 1.68351 1.25309 1.07536 1.21930 0.93010 0.93445 0.96827 0.96936 0.89599 0.92892 0.85012 0.93301 0.89232 0.81851 0.83956 0.81878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.76 9.46 37.16 0.35 -2.41 16 2 C -0.10 -2.51 5.57 -26.73 -0.15 -2.66 16 3 C 0.22 5.49 2.31 -68.87 -0.16 5.33 16 4 H 0.00 0.12 7.72 -51.93 -0.40 -0.28 16 5 C -0.51 -13.94 7.31 -34.44 -0.25 -14.19 16 6 H 0.06 1.57 7.61 -52.48 -0.40 1.17 16 7 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 8 N -0.89 -25.20 11.34 55.43 0.63 -24.57 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.67 -14.89 5.57 -109.22 -0.61 -15.50 16 14 C 0.12 2.41 5.97 -4.97 -0.03 2.38 16 15 C 0.34 5.97 7.11 -157.19 -1.12 4.85 16 16 N -0.50 -8.32 10.33 -10.72 -0.11 -8.43 16 17 C 0.14 1.78 11.30 -17.21 -0.19 1.58 16 18 C -0.24 -2.52 10.17 -39.32 -0.40 -2.92 16 19 C 0.15 1.77 11.31 -17.20 -0.19 1.57 16 20 N -0.52 -8.46 10.34 -10.72 -0.11 -8.57 16 21 H 0.05 1.28 7.35 -51.93 -0.38 0.90 16 22 H 0.05 1.09 7.52 -51.93 -0.39 0.70 16 23 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.01 0.28 7.54 -51.93 -0.39 -0.11 16 25 H 0.09 2.33 6.14 -51.93 -0.32 2.01 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.33 7.45 8.14 -39.29 -0.32 7.13 16 28 H 0.05 0.96 7.95 -51.93 -0.41 0.55 16 29 H 0.09 1.74 7.55 -51.93 -0.39 1.35 16 30 H 0.16 1.41 8.06 -52.49 -0.42 0.98 16 31 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.16 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 272.39 15.07 4.10 4.10 Total: -1.00 -30.14 272.39 -7.59 -37.73 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -4.23 Total: 3.68 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -2.24 Total: -4.78 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.20 Total: -57.06 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.14 -7.59 -37.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594008279.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.084 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds