Wall clock time and date at job start Sun Mar 29 2020 22:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47136 * 2 1 4 4 H 1.08996 * 109.46802 * 177.62698 * 3 2 1 5 5 C 1.50700 * 109.46998 * 57.62862 * 3 2 1 6 6 H 1.08005 * 119.99643 * 240.00053 * 5 3 2 7 7 C 1.37873 * 120.00095 * 59.99734 * 5 3 2 8 8 N 1.31510 * 120.00178 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99834 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47115 * 60.00091 * 9 7 5 11 11 H 1.48501 * 109.47152 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47384 * 300.00072 * 9 7 5 13 13 N 1.46899 * 109.47210 * 297.62743 * 3 2 1 14 14 C 1.46906 * 110.99760 * 274.13793 * 13 3 2 15 15 C 1.50703 * 109.46772 * 184.25627 * 14 13 3 16 16 N 1.31791 * 119.12609 * 269.72991 * 15 14 13 17 17 C 1.32337 * 120.81766 * 179.76371 * 16 15 14 18 18 C 1.38587 * 119.10410 * 0.50310 * 17 16 15 19 19 C 1.38596 * 118.40346 * 359.75032 * 18 17 16 20 20 N 1.31800 * 119.11799 * 90.00029 * 15 14 13 21 21 H 1.08997 * 109.47150 * 294.77382 * 1 2 3 22 22 H 1.09005 * 109.47126 * 54.77023 * 1 2 3 23 23 H 1.08994 * 109.47275 * 174.77411 * 1 2 3 24 24 H 1.08997 * 109.46617 * 240.00098 * 2 1 3 25 25 H 1.08993 * 109.47017 * 120.00383 * 2 1 3 26 26 H 0.97005 * 120.00106 * 179.97438 * 8 7 5 27 27 H 1.00896 * 111.00011 * 150.18391 * 13 3 2 28 28 H 1.08994 * 109.47252 * 304.25763 * 14 13 3 29 29 H 1.08999 * 109.47139 * 64.26385 * 14 13 3 30 30 H 1.08002 * 120.44216 * 180.23259 * 17 16 15 31 31 H 1.07999 * 120.80431 * 179.77615 * 18 17 16 32 32 H 1.08004 * 120.45202 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4427 0.0425 5 6 1.4902 2.1696 1.2000 6 1 0.8739 3.0461 1.0646 7 6 1.7740 1.7160 2.4707 8 7 2.5249 0.6490 2.6355 9 14 1.0931 2.6178 3.9581 10 1 -0.3908 2.6180 3.9003 11 1 1.5406 1.9350 5.1986 12 1 1.5887 4.0177 3.9580 13 7 1.5977 2.1183 -1.2271 14 6 2.5364 1.8735 -2.3303 15 6 2.1076 2.6645 -3.5393 16 7 1.2848 2.1124 -4.4083 17 6 0.8831 2.7781 -5.4792 18 6 1.3476 4.0675 -5.6849 19 6 2.2156 4.6123 -4.7517 20 7 2.5697 3.8880 -3.7022 21 1 -0.3633 0.4306 0.9331 22 1 -0.3634 0.5928 -0.8395 23 1 -0.3633 -1.0233 -0.0936 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 2.7249 0.3300 3.5295 27 1 1.4736 3.1072 -1.0705 28 1 3.5378 2.1823 -2.0306 29 1 2.5413 0.8112 -2.5743 30 1 0.2058 2.3211 -6.1855 31 1 1.0404 4.6344 -6.5513 32 1 2.5976 5.6145 -4.8791 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594008279.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:33 Heat of formation + Delta-G solvation = 24.588013 kcal Electronic energy + Delta-G solvation = -14682.581788 eV Core-core repulsion = 12256.305984 eV Total energy + Delta-G solvation = -2426.275804 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.90651 -38.16706 -35.00275 -34.63436 -33.30665 -31.92422 -28.82715 -26.66334 -25.41073 -25.03435 -23.32496 -20.97489 -18.71339 -18.45760 -17.60424 -16.90502 -16.17431 -16.03764 -15.83134 -15.21281 -14.86277 -14.42135 -14.24722 -13.98591 -13.54604 -13.14994 -12.79979 -12.69029 -12.41832 -12.03819 -11.83743 -11.78261 -11.54683 -11.30572 -10.83469 -10.54796 -10.43325 -10.15399 -9.10386 -8.09236 -6.21481 -0.04828 0.24374 1.43208 1.44501 1.51948 2.42696 2.76825 2.97937 3.19601 3.31023 3.80572 3.81559 4.16316 4.27946 4.47135 4.50116 4.62204 4.74004 4.81212 4.93682 4.96828 5.29269 5.37997 5.50278 5.54955 5.70811 5.79730 5.87608 6.14129 6.25540 6.41222 6.69731 6.96143 7.20583 7.46428 8.96085 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041876 B = 0.006586 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.482999 B = 4250.126250 C = 4549.774901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.097 4.097 3 C 0.223 3.777 4 H -0.030 1.030 5 C -0.527 4.527 6 H 0.054 0.946 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.956 3.044 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.668 5.668 14 C 0.130 3.870 15 C 0.313 3.687 16 N -0.532 5.532 17 C 0.132 3.868 18 C -0.214 4.214 19 C 0.132 3.868 20 N -0.546 5.546 21 H 0.031 0.969 22 H 0.048 0.952 23 H 0.036 0.964 24 H 0.022 0.978 25 H 0.060 0.940 26 H 0.262 0.738 27 H 0.329 0.671 28 H 0.038 0.962 29 H 0.083 0.917 30 H 0.201 0.799 31 H 0.192 0.808 32 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.537 6.204 -15.535 16.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.136 4.136 3 C 0.115 3.885 4 H -0.012 1.012 5 C -0.565 4.565 6 H 0.072 0.928 7 C -0.180 4.180 8 N -0.554 5.554 9 Si 0.781 3.219 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.299 5.299 14 C 0.000 4.000 15 C 0.045 3.955 16 N -0.247 5.247 17 C -0.033 4.033 18 C -0.236 4.236 19 C -0.033 4.033 20 N -0.261 5.261 21 H 0.051 0.949 22 H 0.067 0.933 23 H 0.055 0.945 24 H 0.041 0.959 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.146 0.854 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.218 0.782 31 H 0.210 0.790 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -2.586 5.040 -14.783 15.831 hybrid contribution 0.429 1.255 0.565 1.442 sum -2.157 6.295 -14.218 15.698 Atomic orbital electron populations 1.21280 0.96099 0.98466 1.00432 1.21306 0.96285 0.97376 0.98611 1.18980 0.91444 0.92416 0.85652 1.01218 1.21349 1.31788 1.12055 0.91319 0.92769 1.25599 0.95292 0.95710 1.01380 1.70007 1.38237 1.24252 1.22858 0.85652 0.78861 0.78695 0.78663 1.19736 1.20886 1.19843 1.60688 1.47122 1.15746 1.06364 1.20533 0.93920 0.98345 0.87250 1.22870 0.89641 0.88643 0.94394 1.68253 1.12150 1.39734 1.04516 1.23987 0.94631 0.92039 0.92666 1.23340 0.99433 0.97729 1.03058 1.23938 0.91568 1.00295 0.87505 1.68258 1.26268 1.07403 1.24189 0.94948 0.93284 0.94514 0.95914 0.92104 0.92879 0.85423 0.94436 0.89906 0.78248 0.79030 0.78318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.89 9.46 71.98 0.68 -4.21 16 2 C -0.10 -4.90 5.57 30.59 0.17 -4.73 16 3 C 0.22 11.66 2.31 44.17 0.10 11.76 16 4 H -0.03 -1.72 7.72 -2.39 -0.02 -1.74 16 5 C -0.53 -29.22 7.31 25.60 0.19 -29.03 16 6 H 0.05 2.98 7.61 -2.91 -0.02 2.96 16 7 C 0.02 1.10 5.30 84.65 0.45 1.54 16 8 N -0.91 -52.93 11.34 21.45 0.24 -52.69 16 9 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 13 N -0.67 -30.35 5.57 -499.46 -2.78 -33.14 16 14 C 0.13 5.28 5.97 85.56 0.51 5.79 16 15 C 0.31 11.08 7.11 138.75 0.99 12.07 16 16 N -0.53 -17.11 10.33 -187.84 -1.94 -19.05 16 17 C 0.13 2.83 11.30 84.70 0.96 3.79 16 18 C -0.21 -3.51 10.17 22.44 0.23 -3.28 16 19 C 0.13 2.83 11.31 84.70 0.96 3.78 16 20 N -0.55 -17.50 10.34 -187.83 -1.94 -19.44 16 21 H 0.03 1.59 7.35 -2.39 -0.02 1.58 16 22 H 0.05 2.23 7.52 -2.38 -0.02 2.21 16 23 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.02 1.06 7.54 -2.39 -0.02 1.04 16 25 H 0.06 3.38 6.14 -2.39 -0.01 3.37 16 26 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 27 H 0.33 15.17 8.14 -89.70 -0.73 14.44 16 28 H 0.04 1.57 7.95 -2.39 -0.02 1.55 16 29 H 0.08 3.37 7.55 -2.39 -0.02 3.35 16 30 H 0.20 2.61 8.06 -2.91 -0.02 2.59 16 31 H 0.19 1.24 8.06 -2.91 -0.02 1.22 16 32 H 0.20 2.62 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -66.89 272.39 1.22 -65.67 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.38 Total: 15.13 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 5.23 Total: -2.52 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -6.42 Total: -124.31 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -66.89 1.22 -65.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594008279.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.263 kcal (2) G-P(sol) polarization free energy of solvation -66.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds