Wall clock time and date at job start Sun Mar 29 2020 22:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47125 * 2 1 4 4 H 1.08997 * 109.47021 * 179.24470 * 3 2 1 5 5 C 1.50706 * 109.46899 * 299.24241 * 3 2 1 6 6 H 1.07993 * 119.99972 * 120.00021 * 5 3 2 7 7 C 1.37875 * 119.99883 * 300.00041 * 5 3 2 8 8 N 1.31509 * 120.00187 * 179.97438 * 7 5 3 9 9 Si 1.86805 * 120.00104 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46875 * 89.99811 * 9 7 5 11 11 H 1.48493 * 109.47256 * 209.99933 * 9 7 5 12 12 H 1.48495 * 109.47026 * 330.00111 * 9 7 5 13 13 N 1.46905 * 109.47351 * 59.24132 * 3 2 1 14 14 C 1.46899 * 110.99549 * 85.93737 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.54171 * 14 13 3 16 16 N 1.31797 * 119.12570 * 269.72999 * 15 14 13 17 17 C 1.32333 * 120.81897 * 179.76277 * 16 15 14 18 18 C 1.38596 * 119.10435 * 0.50408 * 17 16 15 19 19 C 1.38596 * 118.40046 * 359.75301 * 18 17 16 20 20 N 1.31798 * 119.12435 * 90.00147 * 15 14 13 21 21 H 1.09004 * 109.46751 * 175.56145 * 1 2 3 22 22 H 1.09002 * 109.47288 * 55.56315 * 1 2 3 23 23 H 1.08996 * 109.47377 * 295.56232 * 1 2 3 24 24 H 1.09001 * 109.47161 * 119.99236 * 2 1 3 25 25 H 1.08995 * 109.47840 * 239.99475 * 2 1 3 26 26 H 0.97000 * 120.00481 * 180.02562 * 8 7 5 27 27 H 1.00896 * 110.99901 * 209.89380 * 13 3 2 28 28 H 1.08995 * 109.47219 * 295.54002 * 14 13 3 29 29 H 1.08999 * 109.47280 * 55.54678 * 14 13 3 30 30 H 1.07997 * 120.44727 * 180.27804 * 17 16 15 31 31 H 1.08002 * 120.80334 * 179.77468 * 18 17 16 32 32 H 1.07999 * 120.45222 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0135 5 6 1.5530 2.1475 -1.2398 6 1 0.9309 3.0259 -1.1524 7 6 1.9016 1.6709 -2.4857 8 7 1.4763 2.2857 -3.5676 9 14 2.9782 0.1517 -2.6370 10 1 2.1207 -1.0596 -2.6874 11 1 3.7854 0.2389 -3.8803 12 1 3.8842 0.0683 -1.4634 13 7 1.5354 2.1404 1.1902 14 6 2.4168 1.9177 2.3441 15 6 1.9294 2.7342 3.5133 16 7 2.3893 3.9584 3.6769 17 6 1.9807 4.7065 4.6891 18 6 1.0654 4.1825 5.5882 19 6 0.6088 2.8896 5.3860 20 7 1.0587 2.2031 4.3480 21 1 -0.3633 -1.0246 -0.0795 22 1 -0.3634 0.5811 -0.8476 23 1 -0.3634 0.4434 0.9270 24 1 1.8933 -0.5137 0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.7213 1.9502 -4.4442 27 1 1.4188 3.1260 1.0091 28 1 2.4073 0.8607 2.6099 29 1 3.4327 2.2191 2.0888 30 1 2.3582 5.7105 4.8149 31 1 0.7161 4.7675 6.4262 32 1 -0.1050 2.4486 6.0660 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594008280.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:37 Heat of formation + Delta-G solvation = 53.482595 kcal Electronic energy + Delta-G solvation = -14742.676179 eV Core-core repulsion = 12317.653339 eV Total energy + Delta-G solvation = -2425.022841 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.89802 -36.63560 -33.62094 -33.40079 -31.82797 -30.69347 -27.35898 -25.19477 -24.47647 -23.06026 -22.14029 -19.34484 -17.46646 -17.18512 -16.32346 -15.53572 -15.09221 -14.89586 -13.94823 -13.61610 -13.48056 -13.44588 -12.94543 -12.54132 -12.11622 -11.75390 -11.10657 -10.83212 -10.76690 -10.57722 -10.49192 -10.16237 -9.95252 -9.56201 -9.26585 -9.13608 -8.92759 -8.55473 -7.51468 -6.07839 -4.06823 0.92643 1.15523 3.29906 3.38832 3.40679 3.79710 4.05900 4.24007 4.40831 4.58516 4.97053 5.09699 5.21633 5.29755 5.45502 5.64723 6.00460 6.03328 6.20724 6.26827 6.45063 6.51386 6.75800 6.94712 7.06915 7.15657 7.26180 7.52995 7.61692 7.87923 8.21246 8.30497 8.60491 8.96229 9.54103 11.04988 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046278 B = 0.006836 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.897866 B = 4094.868208 C = 4287.087604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C 0.187 3.813 4 H 0.004 0.996 5 C -0.513 4.513 6 H 0.078 0.922 7 C 0.074 3.926 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.276 1.276 11 H -0.298 1.298 12 H -0.268 1.268 13 N -0.664 5.664 14 C 0.122 3.878 15 C 0.335 3.665 16 N -0.516 5.516 17 C 0.146 3.854 18 C -0.241 4.241 19 C 0.145 3.855 20 N -0.501 5.501 21 H 0.020 0.980 22 H 0.067 0.933 23 H 0.055 0.945 24 H 0.032 0.968 25 H 0.042 0.958 26 H 0.264 0.736 27 H 0.342 0.658 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.165 0.835 31 H 0.143 0.857 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.498 1.363 16.710 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.078 3.922 4 H 0.022 0.978 5 C -0.551 4.551 6 H 0.096 0.904 7 C -0.128 4.128 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.226 1.226 12 H -0.193 1.193 13 N -0.297 5.297 14 C -0.009 4.009 15 C 0.068 3.932 16 N -0.230 5.230 17 C -0.020 4.020 18 C -0.264 4.264 19 C -0.021 4.021 20 N -0.215 5.215 21 H 0.039 0.961 22 H 0.086 0.914 23 H 0.074 0.926 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.160 0.840 28 H 0.108 0.892 29 H 0.069 0.931 30 H 0.182 0.818 31 H 0.161 0.839 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.402 0.308 15.896 15.904 hybrid contribution 0.908 0.333 0.398 1.045 sum 1.309 0.641 16.294 16.359 Atomic orbital electron populations 1.21464 0.95503 0.98332 1.02927 1.21747 0.97504 0.97949 0.97889 1.19624 0.93045 0.91369 0.88150 0.97821 1.20992 1.32521 1.13272 0.88359 0.90378 1.24877 0.95495 0.96790 0.95667 1.69883 1.45407 1.40475 0.97827 0.86857 0.80838 0.83745 0.76839 1.20332 1.22562 1.19302 1.60588 1.47812 1.16868 1.04400 1.20753 0.94970 0.97951 0.87255 1.23409 0.87807 0.88159 0.93859 1.68332 1.26625 1.06812 1.21223 1.23219 0.91182 0.99213 0.88405 1.22859 1.01801 0.98683 1.03031 1.23266 0.94868 0.90882 0.93126 1.68334 1.10945 1.38454 1.03791 0.96082 0.91448 0.92619 0.94885 0.94028 0.92592 0.83988 0.89203 0.93102 0.81777 0.83867 0.81786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 9.52 37.16 0.35 -2.36 16 2 C -0.11 -2.55 5.29 -26.73 -0.14 -2.69 16 3 C 0.19 4.44 1.90 -68.86 -0.13 4.31 16 4 H 0.00 0.10 6.77 -51.93 -0.35 -0.25 16 5 C -0.51 -14.23 7.87 -34.44 -0.27 -14.50 16 6 H 0.08 2.35 7.85 -52.49 -0.41 1.94 16 7 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 8 N -0.90 -27.30 13.96 55.43 0.77 -26.52 16 9 Si 0.89 22.11 24.38 -169.99 -4.14 17.97 16 10 H -0.28 -6.76 6.86 56.52 0.39 -6.37 16 11 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.27 -6.43 6.53 56.52 0.37 -6.06 16 13 N -0.66 -14.01 5.61 -109.21 -0.61 -14.63 16 14 C 0.12 2.22 5.97 -4.97 -0.03 2.19 16 15 C 0.34 5.66 7.11 -157.19 -1.12 4.54 16 16 N -0.52 -8.13 10.33 -10.72 -0.11 -8.24 16 17 C 0.15 1.71 11.30 -17.20 -0.19 1.52 16 18 C -0.24 -2.38 10.17 -39.32 -0.40 -2.78 16 19 C 0.15 1.69 11.30 -17.20 -0.19 1.50 16 20 N -0.50 -7.91 10.33 -10.72 -0.11 -8.02 16 21 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.07 1.63 7.09 -51.93 -0.37 1.26 16 23 H 0.05 1.18 7.73 -51.93 -0.40 0.77 16 24 H 0.03 0.67 7.62 -51.93 -0.40 0.27 16 25 H 0.04 0.98 3.26 -51.93 -0.17 0.81 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.34 7.47 8.13 -39.29 -0.32 7.15 16 28 H 0.09 1.60 7.62 -51.93 -0.40 1.20 16 29 H 0.05 0.92 7.94 -51.93 -0.41 0.51 16 30 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 265.65 15.07 4.00 4.00 Total: -1.00 -31.49 265.65 -6.52 -38.01 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -4.10 Total: 3.69 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -2.22 Total: -6.26 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.06 Total: -57.40 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.14 Total: 17.97 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.49 -6.52 -38.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594008280.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.493 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds