Wall clock time and date at job start Sun Mar 29 2020 22:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47125 * 2 1 4 4 H 1.08997 * 109.47021 * 179.24470 * 3 2 1 5 5 C 1.50706 * 109.46899 * 299.24241 * 3 2 1 6 6 H 1.07993 * 119.99972 * 120.00021 * 5 3 2 7 7 C 1.37875 * 119.99883 * 300.00041 * 5 3 2 8 8 N 1.31509 * 120.00187 * 179.97438 * 7 5 3 9 9 Si 1.86805 * 120.00104 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46875 * 89.99811 * 9 7 5 11 11 H 1.48493 * 109.47256 * 209.99933 * 9 7 5 12 12 H 1.48495 * 109.47026 * 330.00111 * 9 7 5 13 13 N 1.46905 * 109.47351 * 59.24132 * 3 2 1 14 14 C 1.46899 * 110.99549 * 85.93737 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.54171 * 14 13 3 16 16 N 1.31797 * 119.12570 * 269.72999 * 15 14 13 17 17 C 1.32333 * 120.81897 * 179.76277 * 16 15 14 18 18 C 1.38596 * 119.10435 * 0.50408 * 17 16 15 19 19 C 1.38596 * 118.40046 * 359.75301 * 18 17 16 20 20 N 1.31798 * 119.12435 * 90.00147 * 15 14 13 21 21 H 1.09004 * 109.46751 * 175.56145 * 1 2 3 22 22 H 1.09002 * 109.47288 * 55.56315 * 1 2 3 23 23 H 1.08996 * 109.47377 * 295.56232 * 1 2 3 24 24 H 1.09001 * 109.47161 * 119.99236 * 2 1 3 25 25 H 1.08995 * 109.47840 * 239.99475 * 2 1 3 26 26 H 0.97000 * 120.00481 * 180.02562 * 8 7 5 27 27 H 1.00896 * 110.99901 * 209.89380 * 13 3 2 28 28 H 1.08995 * 109.47219 * 295.54002 * 14 13 3 29 29 H 1.08999 * 109.47280 * 55.54678 * 14 13 3 30 30 H 1.07997 * 120.44727 * 180.27804 * 17 16 15 31 31 H 1.08002 * 120.80334 * 179.77468 * 18 17 16 32 32 H 1.07999 * 120.45222 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0135 5 6 1.5530 2.1475 -1.2398 6 1 0.9309 3.0259 -1.1524 7 6 1.9016 1.6709 -2.4857 8 7 1.4763 2.2857 -3.5676 9 14 2.9782 0.1517 -2.6370 10 1 2.1207 -1.0596 -2.6874 11 1 3.7854 0.2389 -3.8803 12 1 3.8842 0.0683 -1.4634 13 7 1.5354 2.1404 1.1902 14 6 2.4168 1.9177 2.3441 15 6 1.9294 2.7342 3.5133 16 7 2.3893 3.9584 3.6769 17 6 1.9807 4.7065 4.6891 18 6 1.0654 4.1825 5.5882 19 6 0.6088 2.8896 5.3860 20 7 1.0587 2.2031 4.3480 21 1 -0.3633 -1.0246 -0.0795 22 1 -0.3634 0.5811 -0.8476 23 1 -0.3634 0.4434 0.9270 24 1 1.8933 -0.5137 0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.7213 1.9502 -4.4442 27 1 1.4188 3.1260 1.0091 28 1 2.4073 0.8607 2.6099 29 1 3.4327 2.2191 2.0888 30 1 2.3582 5.7105 4.8149 31 1 0.7161 4.7675 6.4262 32 1 -0.1050 2.4486 6.0660 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594008280.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:37 Heat of formation + Delta-G solvation = 29.790273 kcal Electronic energy + Delta-G solvation = -14743.703555 eV Core-core repulsion = 12317.653339 eV Total energy + Delta-G solvation = -2426.050217 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.90892 -38.38778 -34.99005 -34.63445 -33.69476 -32.11687 -29.12441 -26.77465 -25.41614 -24.96502 -23.35054 -21.21415 -18.83459 -18.49371 -17.80639 -17.19925 -16.17133 -16.12488 -15.72522 -15.20049 -15.02941 -14.75745 -14.43643 -14.29086 -13.70425 -13.31666 -12.91724 -12.61702 -12.44249 -12.09006 -11.86531 -11.81814 -11.63861 -11.24420 -10.97713 -10.69285 -10.45592 -10.15866 -9.21278 -8.29443 -6.32481 -0.05324 0.23664 1.32145 1.35831 1.45886 2.32147 2.73064 2.98010 3.06477 3.30425 3.65484 3.81116 4.14998 4.27283 4.32839 4.45007 4.48893 4.50089 4.70915 4.72559 4.93980 4.95549 5.16576 5.34042 5.37917 5.50068 5.62379 5.76300 5.94313 6.13498 6.41559 6.57579 6.76613 7.19561 7.32358 8.87048 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046278 B = 0.006836 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.897866 B = 4094.868208 C = 4287.087604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.114 4.114 3 C 0.192 3.808 4 H -0.001 1.001 5 C -0.511 4.511 6 H 0.037 0.963 7 C 0.020 3.980 8 N -0.945 5.945 9 Si 0.945 3.055 10 H -0.264 1.264 11 H -0.298 1.298 12 H -0.250 1.250 13 N -0.663 5.663 14 C 0.127 3.873 15 C 0.309 3.691 16 N -0.546 5.546 17 C 0.131 3.869 18 C -0.214 4.214 19 C 0.132 3.868 20 N -0.529 5.529 21 H 0.047 0.953 22 H 0.033 0.967 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.035 0.965 26 H 0.266 0.734 27 H 0.333 0.667 28 H 0.094 0.906 29 H 0.046 0.954 30 H 0.198 0.802 31 H 0.191 0.809 32 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.657 0.670 19.414 19.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.152 4.152 3 C 0.082 3.918 4 H 0.016 0.984 5 C -0.550 4.550 6 H 0.056 0.944 7 C -0.178 4.178 8 N -0.586 5.586 9 Si 0.772 3.228 10 H -0.190 1.190 11 H -0.226 1.226 12 H -0.174 1.174 13 N -0.295 5.295 14 C -0.004 4.004 15 C 0.041 3.959 16 N -0.261 5.261 17 C -0.034 4.034 18 C -0.236 4.236 19 C -0.033 4.033 20 N -0.243 5.243 21 H 0.066 0.934 22 H 0.052 0.948 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.150 0.850 28 H 0.112 0.888 29 H 0.064 0.936 30 H 0.215 0.785 31 H 0.208 0.792 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.555 -0.382 18.645 18.657 hybrid contribution 0.773 0.710 -0.282 1.087 sum 1.329 0.328 18.363 18.414 Atomic orbital electron populations 1.21350 0.95077 0.99388 1.01523 1.21730 0.97889 0.96766 0.98809 1.19468 0.92504 0.92247 0.87548 0.98368 1.21190 1.31260 1.12140 0.90375 0.94428 1.25680 0.96967 0.99947 0.95222 1.70024 1.47456 1.42591 0.98497 0.85904 0.79421 0.80200 0.77277 1.19021 1.22588 1.17436 1.60523 1.48667 1.15955 1.04313 1.20645 0.94163 0.98682 0.86915 1.22926 0.89710 0.88875 0.94371 1.68254 1.27741 1.06859 1.23251 1.23908 0.91526 1.00221 0.87714 1.23340 0.99313 0.97947 1.02981 1.23978 0.95114 0.91760 0.92450 1.68251 1.11272 1.39734 1.05069 0.93411 0.94783 0.92359 0.92107 0.94717 0.92490 0.85033 0.88817 0.93624 0.78509 0.79179 0.78251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 9.52 71.98 0.69 -4.24 16 2 C -0.11 -4.97 5.29 30.59 0.16 -4.81 16 3 C 0.19 9.13 1.90 44.17 0.08 9.21 16 4 H 0.00 -0.06 6.77 -2.39 -0.02 -0.07 16 5 C -0.51 -29.25 7.87 25.60 0.20 -29.05 16 6 H 0.04 2.40 7.85 -2.91 -0.02 2.37 16 7 C 0.02 1.15 5.45 84.65 0.46 1.61 16 8 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 9 Si 0.94 45.43 24.38 68.60 1.67 47.10 16 10 H -0.26 -12.13 6.86 99.48 0.68 -11.45 16 11 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 12 H -0.25 -11.24 6.53 99.48 0.65 -10.59 16 13 N -0.66 -28.32 5.61 -499.44 -2.80 -31.12 16 14 C 0.13 4.61 5.97 85.56 0.51 5.12 16 15 C 0.31 10.27 7.11 138.75 0.99 11.25 16 16 N -0.55 -16.75 10.33 -187.84 -1.94 -18.69 16 17 C 0.13 2.72 11.30 84.70 0.96 3.68 16 18 C -0.21 -3.37 10.17 22.44 0.23 -3.14 16 19 C 0.13 2.67 11.30 84.70 0.96 3.63 16 20 N -0.53 -15.89 10.33 -187.84 -1.94 -17.83 16 21 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 22 H 0.03 1.64 7.09 -2.39 -0.02 1.62 16 23 H 0.06 2.41 7.73 -2.39 -0.02 2.39 16 24 H 0.06 2.32 7.62 -2.39 -0.02 2.30 16 25 H 0.03 1.56 3.26 -2.39 -0.01 1.55 16 26 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 27 H 0.33 15.10 8.13 -89.70 -0.73 14.37 16 28 H 0.09 3.26 7.62 -2.39 -0.02 3.24 16 29 H 0.05 1.68 7.94 -2.39 -0.02 1.66 16 30 H 0.20 2.55 8.06 -2.91 -0.02 2.52 16 31 H 0.19 1.16 8.06 -2.91 -0.02 1.14 16 32 H 0.20 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -70.62 265.65 0.83 -69.79 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.31 Total: 16.49 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 5.23 Total: -6.73 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -6.39 Total: -126.66 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.67 Total: 47.10 kcal Total: -70.62 0.83 -69.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594008280.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.583 kcal (2) G-P(sol) polarization free energy of solvation -70.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds