Wall clock time and date at job start Sun Mar 29 2020 22:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35348 * 126.75241 * 124.71667 * 10 9 7 12 12 N 1.35310 * 106.17503 * 179.84708 * 11 10 9 13 13 C 1.46505 * 125.86763 * 180.17814 * 12 11 10 14 14 C 1.54265 * 110.02712 * 33.20874 * 13 12 11 15 15 C 1.54967 * 104.15542 * 217.13302 * 14 13 12 16 16 C 1.54886 * 102.77997 * 37.88960 * 15 14 13 17 17 C 1.53871 * 110.03526 * 275.98807 * 13 12 11 18 18 N 1.28712 * 108.26299 * 0.41850 * 12 11 10 19 19 N 1.28632 * 110.17939 * 359.72812 * 18 12 11 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.08000 * 126.91051 * 359.97438 * 11 10 9 24 24 H 1.09003 * 110.01596 * 154.59644 * 13 12 11 25 25 H 1.08992 * 110.49154 * 335.77541 * 14 13 12 26 26 H 1.09001 * 110.48789 * 98.42439 * 14 13 12 27 27 H 1.09003 * 110.72060 * 279.57364 * 15 14 13 28 28 H 1.09008 * 110.76702 * 156.22637 * 15 14 13 29 29 H 1.09004 * 110.48773 * 203.40540 * 16 15 14 30 30 H 1.08994 * 110.60278 * 80.81365 * 16 15 14 31 31 H 1.08999 * 110.03488 * 238.57190 * 17 13 12 32 32 H 1.08999 * 110.03331 * 359.95505 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.2870 -4.6655 0.8765 12 7 3.3139 -5.4525 0.4802 13 6 3.7535 -6.6858 1.1375 14 6 2.5423 -7.4179 1.7513 15 6 3.0880 -8.0085 3.0761 16 6 4.0367 -6.8940 3.5829 17 6 4.7035 -6.3530 2.3013 18 7 3.8413 -4.9286 -0.5706 19 7 3.2179 -3.8494 -0.8890 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 1.6411 -4.8218 1.7279 24 1 4.2560 -7.3330 0.4187 25 1 1.7334 -6.7155 1.9518 26 1 2.2022 -8.2142 1.0893 27 1 3.6396 -8.9299 2.8892 28 1 2.2784 -8.1789 3.7858 29 1 4.7863 -7.3085 4.2571 30 1 3.4714 -6.1061 4.0805 31 1 5.6668 -6.8394 2.1477 32 1 4.8382 -5.2740 2.3766 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594657590.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:49 Heat of formation + Delta-G solvation = 79.959085 kcal Electronic energy + Delta-G solvation = -14701.532871 eV Core-core repulsion = 12277.658137 eV Total energy + Delta-G solvation = -2423.874734 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.52651 -38.32547 -33.75834 -32.63966 -30.99737 -29.09776 -28.20705 -27.24820 -23.39590 -22.46303 -21.14408 -20.19108 -19.71170 -17.10427 -16.30976 -16.04326 -15.07570 -14.70591 -14.42931 -14.10495 -13.50728 -12.60233 -12.53157 -12.29955 -11.90835 -11.53682 -11.45028 -11.42523 -11.15539 -10.89148 -10.86755 -10.68732 -10.61021 -10.01730 -9.65770 -9.37665 -9.21029 -8.40596 -8.08120 -5.96542 -3.96805 2.28527 2.83861 3.38752 3.43577 3.47258 3.56490 4.13363 4.25080 4.53593 4.58395 4.95312 5.01726 5.09817 5.13187 5.30584 5.31926 5.41119 5.52188 5.60439 5.73901 5.78779 5.89022 5.94826 6.02243 6.16206 6.41151 7.18415 7.28866 7.56344 7.66113 8.01461 8.40701 9.06690 9.37741 9.65828 11.14652 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045005 B = 0.006096 C = 0.006049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.008911 B = 4591.712027 C = 4627.388838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.502 4.502 8 H 0.058 0.942 9 C 0.092 3.908 10 C 0.034 3.966 11 C -0.081 4.081 12 N -0.297 5.297 13 C 0.144 3.856 14 C -0.137 4.137 15 C -0.121 4.121 16 C -0.124 4.124 17 C -0.136 4.136 18 N -0.113 5.113 19 N -0.264 5.264 20 H 0.261 0.739 21 H 0.036 0.964 22 H 0.038 0.962 23 H 0.178 0.822 24 H 0.108 0.892 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.120 -16.295 7.986 18.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.054 3.946 10 C -0.104 4.104 11 C -0.230 4.230 12 N -0.093 5.093 13 C 0.041 3.959 14 C -0.175 4.175 15 C -0.159 4.159 16 C -0.162 4.162 17 C -0.174 4.174 18 N -0.091 5.091 19 N -0.131 5.131 20 H 0.071 0.929 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.195 0.805 24 H 0.126 0.874 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.089 -16.314 6.899 18.730 hybrid contribution -0.322 0.922 0.873 1.310 sum 5.767 -15.392 7.772 18.181 Atomic orbital electron populations 1.69950 1.05965 1.26714 1.51238 1.24972 0.94872 0.99203 0.95376 0.86511 0.79717 0.83108 0.78207 1.20548 1.21300 1.19966 1.21056 0.93244 0.89793 1.49999 0.92325 1.17718 0.90906 0.87593 0.98433 1.23004 0.97848 0.97676 0.91851 1.23181 0.98047 0.95983 1.05773 1.47338 1.22467 1.19204 1.20242 1.22205 0.96494 0.82314 0.94879 1.22855 0.96984 1.00317 0.97361 1.22483 0.99176 0.98187 0.96005 1.22379 0.98768 0.98291 0.96783 1.22578 0.98435 1.02915 0.93508 1.78182 1.21713 1.07166 1.01989 1.75059 1.06885 1.07338 1.23799 0.92949 0.94613 0.94355 0.80450 0.87367 0.89573 0.90187 0.90951 0.90632 0.91019 0.90966 0.90164 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.50 -14.75 9.09 -34.44 -0.31 -15.06 16 8 H 0.06 1.76 7.74 -52.49 -0.41 1.36 16 9 C 0.09 2.46 5.55 -29.03 -0.16 2.30 16 10 C 0.03 0.80 6.44 -82.78 -0.53 0.26 16 11 C -0.08 -1.53 10.43 -17.05 -0.18 -1.71 16 12 N -0.30 -5.14 3.17 -53.67 -0.17 -5.31 16 13 C 0.14 1.71 3.92 -66.81 -0.26 1.44 16 14 C -0.14 -1.27 6.38 -25.03 -0.16 -1.43 16 15 C -0.12 -0.86 6.91 -24.70 -0.17 -1.03 16 16 C -0.12 -1.02 6.83 -25.07 -0.17 -1.19 16 17 C -0.14 -1.42 6.60 -25.61 -0.17 -1.59 16 18 N -0.11 -2.40 13.16 60.35 0.79 -1.60 16 19 N -0.26 -6.52 12.40 33.29 0.41 -6.10 16 20 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 21 H 0.04 0.94 8.12 -51.93 -0.42 0.52 16 22 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 23 H 0.18 2.73 6.97 -52.49 -0.37 2.36 16 24 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.09 0.88 5.99 -51.93 -0.31 0.57 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.02 7.92 -51.93 -0.41 0.61 16 LS Contribution 270.67 15.07 4.08 4.08 Total: -1.00 -33.20 270.67 -5.82 -39.02 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: -4.43 Total: -4.76 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -2.22 Total: -16.47 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 1.77 Total: -39.23 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.20 -5.82 -39.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594657590.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.977 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds