Wall clock time and date at job start Sun Mar 29 2020 22:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35348 * 126.75241 * 124.71667 * 10 9 7 12 12 N 1.35310 * 106.17503 * 179.84708 * 11 10 9 13 13 C 1.46505 * 125.86763 * 180.17814 * 12 11 10 14 14 C 1.54265 * 110.02712 * 33.20874 * 13 12 11 15 15 C 1.54967 * 104.15542 * 217.13302 * 14 13 12 16 16 C 1.54886 * 102.77997 * 37.88960 * 15 14 13 17 17 C 1.53871 * 110.03526 * 275.98807 * 13 12 11 18 18 N 1.28712 * 108.26299 * 0.41850 * 12 11 10 19 19 N 1.28632 * 110.17939 * 359.72812 * 18 12 11 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.08000 * 126.91051 * 359.97438 * 11 10 9 24 24 H 1.09003 * 110.01596 * 154.59644 * 13 12 11 25 25 H 1.08992 * 110.49154 * 335.77541 * 14 13 12 26 26 H 1.09001 * 110.48789 * 98.42439 * 14 13 12 27 27 H 1.09003 * 110.72060 * 279.57364 * 15 14 13 28 28 H 1.09008 * 110.76702 * 156.22637 * 15 14 13 29 29 H 1.09004 * 110.48773 * 203.40540 * 16 15 14 30 30 H 1.08994 * 110.60278 * 80.81365 * 16 15 14 31 31 H 1.08999 * 110.03488 * 238.57190 * 17 13 12 32 32 H 1.08999 * 110.03331 * 359.95505 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.2870 -4.6655 0.8765 12 7 3.3139 -5.4525 0.4802 13 6 3.7535 -6.6858 1.1375 14 6 2.5423 -7.4179 1.7513 15 6 3.0880 -8.0085 3.0761 16 6 4.0367 -6.8940 3.5829 17 6 4.7035 -6.3530 2.3013 18 7 3.8413 -4.9286 -0.5706 19 7 3.2179 -3.8494 -0.8890 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 1.6411 -4.8218 1.7279 24 1 4.2560 -7.3330 0.4187 25 1 1.7334 -6.7155 1.9518 26 1 2.2022 -8.2142 1.0893 27 1 3.6396 -8.9299 2.8892 28 1 2.2784 -8.1789 3.7858 29 1 4.7863 -7.3085 4.2571 30 1 3.4714 -6.1061 4.0805 31 1 5.6668 -6.8394 2.1477 32 1 4.8382 -5.2740 2.3766 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594657590.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:48 Heat of formation + Delta-G solvation = 58.388977 kcal Electronic energy + Delta-G solvation = -14702.468221 eV Core-core repulsion = 12277.658137 eV Total energy + Delta-G solvation = -2424.810084 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.11655 -39.21532 -35.69094 -34.26470 -32.83373 -29.96139 -29.51994 -28.82367 -25.47951 -23.79901 -22.32752 -21.35993 -20.92854 -18.49967 -18.28407 -17.21731 -16.59011 -16.31101 -15.73859 -15.34852 -14.41304 -14.32539 -14.27802 -13.85798 -13.29072 -12.93925 -12.85024 -12.63446 -12.51077 -12.15796 -12.04611 -11.87460 -11.80694 -11.69774 -11.51048 -11.35313 -10.77544 -10.59330 -9.88002 -8.19662 -6.28506 0.74567 1.39487 1.41944 1.52019 1.56304 1.74978 2.43927 3.12954 3.29710 3.47356 3.64438 3.83225 4.15136 4.23545 4.32206 4.36820 4.38767 4.49223 4.65678 4.78724 4.85899 4.99085 5.05094 5.18424 5.22043 5.28644 5.41559 5.43387 5.53511 5.75715 5.89079 6.21482 6.79370 7.38103 7.70550 8.91422 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045005 B = 0.006096 C = 0.006049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.008911 B = 4591.712027 C = 4627.388838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.525 4.525 8 H 0.043 0.957 9 C 0.103 3.897 10 C -0.007 4.007 11 C -0.052 4.052 12 N -0.276 5.276 13 C 0.127 3.873 14 C -0.135 4.135 15 C -0.109 4.109 16 C -0.122 4.122 17 C -0.133 4.133 18 N -0.125 5.125 19 N -0.311 5.311 20 H 0.267 0.733 21 H 0.034 0.966 22 H 0.008 0.992 23 H 0.215 0.785 24 H 0.122 0.878 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.749 -17.768 9.638 21.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.788 3.212 4 H -0.201 1.201 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.563 4.563 8 H 0.061 0.939 9 C 0.064 3.936 10 C -0.145 4.145 11 C -0.202 4.202 12 N -0.071 5.071 13 C 0.027 3.973 14 C -0.173 4.173 15 C -0.147 4.147 16 C -0.159 4.159 17 C -0.172 4.172 18 N -0.103 5.103 19 N -0.177 5.177 20 H 0.076 0.924 21 H 0.052 0.948 22 H 0.026 0.974 23 H 0.232 0.768 24 H 0.140 0.860 25 H 0.096 0.904 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.738 -17.821 8.550 20.883 hybrid contribution -0.491 1.248 0.404 1.401 sum 6.248 -16.573 8.954 19.846 Atomic orbital electron populations 1.70041 1.07252 1.27958 1.51406 1.25795 0.95812 1.02670 0.94637 0.85484 0.78516 0.78824 0.78413 1.20099 1.19710 1.19687 1.21269 0.92710 0.91578 1.50782 0.93896 1.17386 0.91094 0.88338 0.96785 1.22674 0.98626 0.98944 0.94276 1.23470 0.97677 0.94078 1.04961 1.47792 1.20886 1.19753 1.18715 1.22904 0.98484 0.80357 0.95558 1.22921 0.95465 1.00228 0.98729 1.22482 0.99372 0.98200 0.94661 1.22392 0.99292 0.98485 0.95748 1.22598 0.99309 1.01204 0.94109 1.78047 1.21935 1.06722 1.03565 1.74962 1.08038 1.09199 1.25509 0.92431 0.94812 0.97357 0.76812 0.85967 0.90393 0.88824 0.89045 0.89211 0.89082 0.91812 0.88286 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 2 C 0.01 0.54 5.46 84.66 0.46 1.00 16 3 Si 0.96 46.26 29.54 68.60 2.03 48.29 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.52 -31.78 9.09 25.60 0.23 -31.54 16 8 H 0.04 2.67 7.74 -2.91 -0.02 2.65 16 9 C 0.10 5.71 5.55 29.10 0.16 5.87 16 10 C -0.01 -0.33 6.44 41.60 0.27 -0.06 16 11 C -0.05 -1.91 10.43 83.49 0.87 -1.04 16 12 N -0.28 -9.29 3.17 -323.73 -1.03 -10.32 16 13 C 0.13 2.71 3.92 45.71 0.18 2.89 16 14 C -0.13 -2.07 6.38 31.70 0.20 -1.86 16 15 C -0.11 -1.11 6.91 31.91 0.22 -0.88 16 16 C -0.12 -1.59 6.83 31.67 0.22 -1.37 16 17 C -0.13 -2.48 6.60 31.32 0.21 -2.28 16 18 N -0.12 -5.34 13.16 37.02 0.49 -4.85 16 19 N -0.31 -15.83 12.40 -48.60 -0.60 -16.43 16 20 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 21 H 0.03 1.83 8.12 -2.38 -0.02 1.81 16 22 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 23 H 0.22 6.13 6.97 -2.91 -0.02 6.11 16 24 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.08 1.35 5.99 -2.39 -0.01 1.34 16 26 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.18 7.92 -2.39 -0.02 1.16 16 Total: -1.00 -73.94 270.67 5.29 -68.65 By element: Atomic # 1 Polarization: -1.21 SS G_CDS: 1.10 Total: -0.11 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: 3.02 Total: -29.28 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -0.86 Total: -87.55 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -73.94 5.29 -68.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594657590.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.037 kcal (2) G-P(sol) polarization free energy of solvation -73.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds