Wall clock time and date at job start Sun Mar 29 2020 22:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38621 * 120.44990 * 2 1 4 4 C 1.38577 * 118.39940 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.44848 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.46652 * 95.00365 * 5 4 3 7 7 C 1.46506 * 120.00137 * 269.99927 * 6 5 4 8 8 C 1.36932 * 120.00086 * 90.00724 * 6 5 4 9 9 H 1.07999 * 120.00017 * 22.34154 * 8 6 5 10 10 C 1.38817 * 119.99871 * 202.34905 * 8 6 5 11 11 N 1.31615 * 119.99791 * 11.32592 * 10 8 6 12 12 Si 1.86799 * 119.99817 * 191.32924 * 10 8 6 13 13 H 1.48500 * 109.47550 * 89.99734 * 12 10 8 14 14 H 1.48502 * 109.47132 * 209.99823 * 12 10 8 15 15 H 1.48505 * 109.47232 * 329.99638 * 12 10 8 16 16 N 1.32345 * 119.10539 * 0.28005 * 4 3 2 17 17 C 1.31784 * 120.81871 * 359.43755 * 16 4 3 18 18 C 1.50703 * 119.12492 * 180.31384 * 17 16 4 19 19 N 1.31808 * 121.75512 * 0.57545 * 17 16 4 20 20 H 1.09000 * 109.46847 * 89.99796 * 1 2 3 21 21 H 1.09003 * 109.47197 * 209.99961 * 1 2 3 22 22 H 1.08998 * 109.47179 * 330.00639 * 1 2 3 23 23 H 1.07995 * 120.79826 * 359.95660 * 3 2 1 24 24 H 1.09006 * 109.47082 * 335.00527 * 5 4 3 25 25 H 1.08992 * 109.47497 * 215.00237 * 5 4 3 26 26 H 1.08996 * 109.46970 * 94.22048 * 7 6 5 27 27 H 1.08998 * 109.47128 * 214.22677 * 7 6 5 28 28 H 1.09000 * 109.46736 * 334.22554 * 7 6 5 29 29 H 0.97008 * 119.99700 * 180.02562 * 11 10 8 30 30 H 1.09000 * 109.47226 * 270.25873 * 18 17 16 31 31 H 1.09005 * 109.46555 * 30.25388 * 18 17 16 32 32 H 1.09002 * 109.47429 * 150.25288 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5944 1.1454 0.0005 5 6 4.4041 2.4164 0.0000 6 7 4.7675 2.7644 1.3759 7 6 3.8832 3.6176 2.1737 8 6 5.9338 2.2924 1.9162 9 1 6.7427 1.9850 1.2701 10 6 6.0763 2.2088 3.2945 11 7 5.0285 2.3671 4.0752 12 14 7.7550 1.8718 4.0412 13 1 8.4507 3.1586 4.2966 14 1 7.5892 1.1364 5.3206 15 1 8.5600 1.0522 3.1000 16 7 4.1964 -0.0332 -0.0046 17 6 3.4956 -1.1492 0.0009 18 6 4.2205 -2.4705 0.0019 19 7 2.1775 -1.1408 0.0004 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5137 23 1 1.6900 2.1418 -0.0007 24 1 3.8139 3.2231 -0.4350 25 1 5.3094 2.2703 -0.5890 26 1 3.2178 2.9937 2.7704 27 1 4.4821 4.2450 2.8337 28 1 3.2918 4.2487 1.5103 29 1 5.1282 2.3090 5.0384 30 1 4.3957 -2.7896 -1.0255 31 1 5.1754 -2.3606 0.5161 32 1 3.6148 -3.2169 0.5160 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595304426.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:02 Heat of formation + Delta-G solvation = 62.415786 kcal Electronic energy + Delta-G solvation = -14995.344559 eV Core-core repulsion = 12570.709091 eV Total energy + Delta-G solvation = -2424.635468 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.41326 -35.88182 -33.90714 -33.05055 -30.94100 -28.83063 -27.87378 -26.55426 -25.71185 -22.22627 -21.67577 -20.32684 -17.08170 -16.65403 -15.32948 -14.98924 -14.71066 -14.45320 -13.58843 -13.37285 -13.12940 -13.05320 -12.59679 -12.23992 -11.96055 -11.86214 -11.61495 -11.19192 -10.92544 -10.69832 -10.50719 -10.19432 -10.03559 -9.98644 -9.60167 -8.71528 -8.64522 -8.49021 -6.88790 -5.79191 -3.22455 1.55942 1.75732 3.37820 3.43569 3.46116 4.28296 4.42848 4.51165 4.70480 5.00650 5.41763 5.46913 5.59181 5.66109 5.71160 5.77170 5.84035 5.88383 5.91014 6.07729 6.16644 6.34769 6.50175 6.60629 6.67133 7.12517 7.29808 7.64275 7.77521 7.80262 8.31573 8.85101 9.16364 9.75834 10.23387 11.25725 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029202 B = 0.009213 C = 0.008021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.600693 B = 3038.394942 C = 3490.206889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.162 3.838 3 C -0.235 4.235 4 C 0.178 3.822 5 C 0.187 3.813 6 N -0.581 5.581 7 C 0.160 3.840 8 C -0.244 4.244 9 H 0.076 0.924 10 C 0.001 3.999 11 N -0.907 5.907 12 Si 0.910 3.090 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.277 1.277 16 N -0.503 5.503 17 C 0.311 3.689 18 C -0.079 4.079 19 N -0.543 5.543 20 H 0.076 0.924 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.134 0.866 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.028 0.972 27 H 0.052 0.948 28 H 0.001 0.999 29 H 0.253 0.747 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.173 -2.894 -7.983 10.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.017 3.983 3 C -0.258 4.258 4 C 0.028 3.972 5 C 0.059 3.941 6 N -0.302 5.302 7 C 0.016 3.984 8 C -0.374 4.374 9 H 0.093 0.907 10 C -0.197 4.197 11 N -0.551 5.551 12 Si 0.740 3.260 13 H -0.213 1.213 14 H -0.218 1.218 15 H -0.202 1.202 16 N -0.219 5.219 17 C 0.043 3.957 18 C -0.137 4.137 19 N -0.261 5.261 20 H 0.095 0.905 21 H 0.094 0.906 22 H 0.094 0.906 23 H 0.152 0.848 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.019 0.981 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.681 -3.693 -7.768 10.308 hybrid contribution 0.219 0.455 0.788 0.936 sum -5.462 -3.238 -6.980 9.436 Atomic orbital electron populations 1.20672 0.88794 1.03430 1.02749 1.21510 0.96875 0.88620 0.91295 1.22458 0.96323 0.99581 1.07423 1.23427 0.91730 0.95803 0.86192 1.20102 0.96361 0.88287 0.89391 1.44271 1.22037 1.53616 1.10248 1.20901 0.92943 0.92151 0.92396 1.19336 0.90091 1.37988 0.89969 0.90660 1.25127 0.97560 1.00284 0.96777 1.70076 1.27632 1.53925 1.03479 0.86154 0.83390 0.77914 0.78552 1.21334 1.21751 1.20202 1.68162 1.41316 0.98189 1.14275 1.23137 0.86610 0.94995 0.90993 1.20454 0.99974 0.90391 1.02913 1.67956 1.09949 1.30379 1.17776 0.90503 0.90576 0.90595 0.84802 0.92089 0.91451 0.95406 0.92956 0.98064 0.93641 0.90448 0.89795 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.22 36.01 0.37 -0.90 16 2 C 0.16 2.89 6.82 -82.24 -0.56 2.33 16 3 C -0.23 -4.39 9.52 -39.31 -0.37 -4.76 16 4 C 0.18 3.80 6.41 -82.25 -0.53 3.28 16 5 C 0.19 3.95 6.06 -5.19 -0.03 3.92 16 6 N -0.58 -14.73 2.91 -182.50 -0.53 -15.26 16 7 C 0.16 3.92 9.01 59.85 0.54 4.46 16 8 C -0.24 -6.79 9.67 -15.06 -0.15 -6.94 16 9 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 10 C 0.00 0.03 5.13 -17.43 -0.09 -0.06 16 11 N -0.91 -26.76 10.58 55.49 0.59 -26.17 16 12 Si 0.91 22.27 29.57 -169.99 -5.03 17.25 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 N -0.50 -11.23 10.27 -6.99 -0.07 -11.30 16 17 C 0.31 6.23 7.64 -157.19 -1.20 5.03 16 18 C -0.08 -1.23 10.32 36.01 0.37 -0.86 16 19 N -0.54 -10.50 10.27 -6.98 -0.07 -10.57 16 20 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 23 H 0.13 2.15 8.06 -52.49 -0.42 1.72 16 24 H 0.06 1.09 7.79 -51.93 -0.40 0.69 16 25 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 26 H 0.03 0.74 7.42 -51.93 -0.39 0.36 16 27 H 0.05 1.36 7.19 -51.93 -0.37 0.99 16 28 H 0.00 0.02 7.84 -51.93 -0.41 -0.39 16 29 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 277.02 15.07 4.17 4.17 Total: -1.00 -32.39 277.02 -7.08 -39.47 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -4.49 Total: -3.08 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -1.65 Total: 5.50 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: -0.09 Total: -63.30 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.39 -7.08 -39.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595304426.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.883 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds