Wall clock time and date at job start Sun Mar 29 2020 22:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47067 * 2 1 4 4 H 1.09002 * 109.46891 * 55.72948 * 3 2 1 5 5 C 1.50695 * 109.47107 * 175.73114 * 3 2 1 6 6 H 1.07999 * 120.00335 * 114.18151 * 5 3 2 7 7 C 1.37877 * 120.00011 * 294.18031 * 5 3 2 8 8 N 1.31513 * 119.99988 * 348.50473 * 7 5 3 9 9 Si 1.86800 * 120.00008 * 168.50747 * 7 5 3 10 10 H 1.48507 * 109.46962 * 89.99903 * 9 7 5 11 11 H 1.48499 * 109.47263 * 209.99934 * 9 7 5 12 12 H 1.48503 * 109.47312 * 330.00302 * 9 7 5 13 13 N 1.46498 * 109.46976 * 295.73326 * 3 2 1 14 14 C 1.39050 * 119.99934 * 94.50300 * 13 3 2 15 15 C 1.39478 * 120.15602 * 5.65833 * 14 13 3 16 16 C 1.38568 * 117.89673 * 179.71800 * 15 14 13 17 17 C 1.38809 * 118.04126 * 0.56468 * 16 15 14 18 18 C 1.50699 * 119.99443 * 179.70851 * 17 16 15 19 19 N 1.31793 * 120.01770 * 359.68691 * 17 16 15 20 20 N 1.28348 * 122.28065 * 0.02562 * 19 17 16 21 21 H 1.08992 * 109.47100 * 65.14331 * 1 2 3 22 22 H 1.09009 * 109.46791 * 185.13992 * 1 2 3 23 23 H 1.08996 * 109.47112 * 305.13830 * 1 2 3 24 24 H 1.09001 * 109.47587 * 240.00259 * 2 1 3 25 25 H 1.09000 * 109.47175 * 119.99810 * 2 1 3 26 26 H 0.96998 * 119.99915 * 1.59099 * 8 7 5 27 27 H 0.96997 * 119.99813 * 274.49794 * 13 3 2 28 28 H 1.07997 * 121.04932 * 359.97438 * 15 14 13 29 29 H 1.08003 * 120.97728 * 180.27117 * 16 15 14 30 30 H 1.09003 * 109.47461 * 269.97813 * 18 17 16 31 31 H 1.09007 * 109.47001 * 29.97496 * 18 17 16 32 32 H 1.09003 * 109.47686 * 149.97614 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6155 1.9780 0.8493 5 6 3.5432 1.4439 0.1058 6 1 4.1422 1.8062 -0.7167 7 6 4.1540 0.9826 1.2525 8 7 3.4389 0.7551 2.3325 9 14 5.9974 0.6807 1.2722 10 1 6.6975 1.9201 1.6955 11 1 6.3095 -0.4143 2.2255 12 1 6.4507 0.2964 -0.0887 13 7 1.6374 2.1028 -1.2442 14 6 0.4693 2.8561 -1.2851 15 6 -0.2591 3.0833 -0.1175 16 6 -1.4127 3.8453 -0.2110 17 6 -1.7784 4.3250 -1.4612 18 6 -3.0283 5.1528 -1.6144 19 7 -1.0325 4.0570 -2.5142 20 7 0.0401 3.3568 -2.4342 21 1 -0.3633 0.4319 -0.9324 22 1 -0.3633 -1.0236 0.0921 23 1 -0.3633 0.5915 0.8404 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.4785 0.8898 2.3155 27 1 2.1856 2.0145 -2.0395 28 1 0.0679 2.6816 0.8301 29 1 -2.0122 4.0558 0.6624 30 1 -3.8750 4.4978 -1.8201 31 1 -3.2126 5.7064 -0.6937 32 1 -2.9016 5.8529 -2.4402 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596194325.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:05 Heat of formation + Delta-G solvation = 24.460329 kcal Electronic energy + Delta-G solvation = -14952.062844 eV Core-core repulsion = 12525.781504 eV Total energy + Delta-G solvation = -2426.281341 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.88091 -38.65231 -35.41418 -34.41957 -33.25214 -32.15156 -29.14332 -27.51207 -25.26071 -25.12119 -23.57093 -21.74589 -19.65824 -18.59132 -18.17522 -16.41598 -16.28447 -16.02538 -15.67646 -15.09224 -14.91897 -14.46070 -14.06507 -14.01244 -13.77508 -13.43217 -13.07212 -12.66484 -12.53050 -12.34522 -12.08903 -11.94384 -11.85448 -11.57360 -11.00849 -10.74438 -10.47048 -10.38770 -8.79839 -8.65747 -6.41614 -0.02932 0.34677 1.55073 1.61492 1.80023 2.23681 2.55208 2.74379 3.10734 3.49512 3.77528 3.81855 3.92331 4.19142 4.27734 4.28736 4.42855 4.66440 4.71212 4.85609 4.89331 5.00897 5.03670 5.08196 5.18247 5.25185 5.46835 5.48096 5.76809 5.94727 6.36858 6.53747 6.76641 7.34400 7.98978 8.69734 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046828 B = 0.006997 C = 0.006775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.785409 B = 4000.539064 C = 4132.134786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.270 3.730 4 H 0.026 0.974 5 C -0.630 4.630 6 H 0.049 0.951 7 C -0.011 4.011 8 N -0.921 5.921 9 Si 1.113 2.887 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.275 1.275 13 N -0.692 5.692 14 C 0.336 3.664 15 C -0.192 4.192 16 C -0.068 4.068 17 C -0.006 4.006 18 C -0.082 4.082 19 N -0.240 5.240 20 N -0.357 5.357 21 H 0.036 0.964 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.264 0.736 27 H 0.398 0.602 28 H 0.143 0.857 29 H 0.186 0.814 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.032 4.022 -2.021 10.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.165 3.835 4 H 0.044 0.956 5 C -0.668 4.668 6 H 0.067 0.933 7 C -0.212 4.212 8 N -0.557 5.557 9 Si 0.936 3.064 10 H -0.204 1.204 11 H -0.206 1.206 12 H -0.200 1.200 13 N -0.321 5.321 14 C 0.092 3.908 15 C -0.225 4.225 16 C -0.096 4.096 17 C -0.158 4.158 18 C -0.141 4.141 19 N -0.080 5.080 20 N -0.208 5.208 21 H 0.055 0.945 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.232 0.768 28 H 0.161 0.839 29 H 0.203 0.797 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.459 3.586 -2.493 9.520 hybrid contribution -0.934 0.094 0.235 0.968 sum -9.393 3.681 -2.258 10.338 Atomic orbital electron populations 1.21746 0.95774 1.01402 1.00411 1.21924 0.95079 0.98870 1.00703 1.18756 0.94202 0.88859 0.81639 0.95650 1.22346 0.91791 1.47791 1.04844 0.93257 1.26979 1.10416 0.92699 0.91100 1.70903 1.08692 1.47176 1.28898 0.82955 0.69853 0.77296 0.76321 1.20409 1.20599 1.19964 1.44856 1.21041 1.51420 1.14739 1.20376 0.88545 0.89918 0.91944 1.22139 0.98012 1.03606 0.98739 1.22477 0.94633 0.92701 0.99773 1.23160 1.00395 1.01751 0.90514 1.20602 0.90701 0.98223 1.04528 1.72475 0.99309 1.07316 1.28936 1.72856 1.11209 1.14554 1.22199 0.94489 0.92113 0.92820 0.93626 0.92774 0.92542 0.76761 0.83903 0.79713 0.89352 0.88150 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 8.56 71.98 0.62 -4.29 16 2 C -0.13 -5.47 5.35 30.60 0.16 -5.30 16 3 C 0.27 12.55 1.79 44.25 0.08 12.63 16 4 H 0.03 1.26 5.04 -2.39 -0.01 1.25 16 5 C -0.63 -32.99 8.67 25.60 0.22 -32.77 16 6 H 0.05 2.62 7.83 -2.91 -0.02 2.59 16 7 C -0.01 -0.57 5.13 84.65 0.43 -0.14 16 8 N -0.92 -51.15 13.02 21.45 0.28 -50.87 16 9 Si 1.11 47.46 29.92 68.60 2.05 49.51 16 10 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 13 N -0.69 -29.80 4.95 -327.70 -1.62 -31.42 16 14 C 0.34 13.59 6.50 133.10 0.87 14.46 16 15 C -0.19 -6.70 7.90 22.65 0.18 -6.52 16 16 C -0.07 -1.84 9.86 22.49 0.22 -1.62 16 17 C -0.01 -0.17 6.87 42.70 0.29 0.12 16 18 C -0.08 -1.48 10.19 71.24 0.73 -0.75 16 19 N -0.24 -8.88 11.41 -47.57 -0.54 -9.42 16 20 N -0.36 -14.78 11.54 -55.10 -0.64 -15.41 16 21 H 0.04 1.36 6.84 -2.39 -0.02 1.34 16 22 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 23 H 0.05 1.84 6.99 -2.39 -0.02 1.82 16 24 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.05 2.56 6.59 -2.39 -0.02 2.54 16 26 H 0.26 14.53 6.27 -92.71 -0.58 13.95 16 27 H 0.40 17.07 8.81 -92.71 -0.82 16.25 16 28 H 0.14 5.08 5.27 -2.91 -0.02 5.06 16 29 H 0.19 3.25 8.06 -2.91 -0.02 3.23 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 1.22 8.09 -2.38 -0.02 1.20 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -62.04 265.32 3.83 -58.21 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.50 Total: 23.59 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 3.80 Total: -24.18 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -2.52 Total: -107.13 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.05 Total: 49.51 kcal Total: -62.04 3.83 -58.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596194325.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.669 kcal (2) G-P(sol) polarization free energy of solvation -62.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds