Wall clock time and date at job start Sun Mar 29 2020 22:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40090 * 126.03499 * 2 1 4 4 C 1.30836 * 108.20534 * 179.97438 * 3 2 1 5 5 C 1.39870 * 108.20019 * 0.24683 * 4 3 2 6 6 C 1.34942 * 126.03991 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.12855 * 359.97438 * 6 2 1 8 8 N 1.46898 * 109.47460 * 275.00164 * 7 6 2 9 9 C 1.47476 * 111.00184 * 265.96847 * 8 7 6 10 10 C 1.53507 * 87.93294 * 221.29424 * 9 8 7 11 11 C 1.50703 * 114.34148 * 139.68562 * 10 9 8 12 12 H 1.08008 * 119.99668 * 266.07377 * 11 10 9 13 13 C 1.37875 * 120.00185 * 86.07551 * 11 10 9 14 14 N 1.31512 * 119.99729 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00083 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47081 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46758 * 119.99930 * 15 13 11 18 18 H 1.48498 * 109.47406 * 240.00359 * 15 13 11 19 19 C 1.47483 * 111.00256 * 169.99412 * 8 7 6 20 20 H 1.09003 * 109.47146 * 90.02383 * 1 2 3 21 21 H 1.09004 * 109.46833 * 210.02192 * 1 2 3 22 22 H 1.09002 * 109.47194 * 330.02151 * 1 2 3 23 23 H 1.08002 * 125.89537 * 179.97438 * 4 3 2 24 24 H 1.07998 * 126.03441 * 179.71717 * 5 4 3 25 25 H 1.09005 * 109.46760 * 35.00467 * 7 6 2 26 26 H 1.08998 * 109.47394 * 154.99715 * 7 6 2 27 27 H 1.09000 * 113.47325 * 336.06299 * 9 8 7 28 28 H 1.09003 * 113.47257 * 106.52786 * 9 8 7 29 29 H 1.08995 * 114.17286 * 272.37733 * 10 9 8 30 30 H 0.97004 * 119.99866 * 180.02562 * 14 13 11 31 31 H 1.08999 * 113.48064 * 253.47600 * 19 8 7 32 32 H 1.09000 * 113.47415 * 23.88019 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7322 0.0006 5 6 3.5437 -0.6664 -0.0048 6 6 2.2590 -1.0912 -0.0005 7 6 1.7975 -2.5257 -0.0006 8 7 1.5331 -2.9552 1.3791 9 6 2.7151 -3.6165 1.9626 10 6 1.7626 -4.6478 2.5835 11 6 2.2685 -6.0666 2.5385 12 1 1.9858 -6.7151 1.7224 13 6 3.0922 -6.5369 3.5392 14 7 3.4359 -5.7474 4.5333 15 14 3.7186 -8.2959 3.4839 16 1 3.1905 -8.9715 2.2715 17 1 5.2030 -8.2914 3.4405 18 1 3.2609 -9.0228 4.6952 19 6 0.8570 -4.2657 1.4044 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3633 -0.8898 0.5142 22 1 -0.3634 0.8902 0.5135 23 1 4.4054 1.3712 0.0003 24 1 4.4211 -1.2961 -0.0100 25 1 0.8847 -2.6137 -0.5898 26 1 2.5726 -3.1567 -0.4353 27 1 3.3878 -4.0403 1.2169 28 1 3.2344 -3.0052 2.7007 29 1 1.3696 -4.3617 3.5591 30 1 4.0157 -6.0782 5.2371 31 1 -0.1986 -4.2048 1.6694 32 1 1.0329 -4.8624 0.5093 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597192951.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:12 Heat of formation + Delta-G solvation = 92.591101 kcal Electronic energy + Delta-G solvation = -14743.645244 eV Core-core repulsion = 12320.318275 eV Total energy + Delta-G solvation = -2423.326969 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.17226 -40.49876 -34.91488 -34.15762 -32.87971 -29.91704 -27.60295 -27.28342 -26.52375 -24.24847 -22.04764 -20.69357 -20.46802 -18.66279 -17.60557 -16.86412 -16.40992 -16.19997 -15.59192 -15.55433 -14.85355 -14.47504 -14.12514 -13.88537 -13.50592 -13.28863 -13.18134 -12.96377 -12.86912 -12.34726 -12.10136 -11.75803 -11.54812 -11.22404 -10.88885 -10.51210 -10.18958 -9.76184 -9.44475 -8.14135 -6.25619 0.89125 1.43496 1.45782 1.56897 1.69073 1.89507 2.43996 3.15717 3.32395 3.68961 3.74059 4.00956 4.25427 4.39791 4.43065 4.44551 4.55628 4.64645 4.68424 4.78892 4.83204 4.85342 4.97007 5.17374 5.25603 5.46580 5.64122 5.76543 5.85692 6.10964 6.27964 6.33488 6.76973 6.85205 7.43680 8.95934 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051449 B = 0.006161 C = 0.005846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.095159 B = 4543.476560 C = 4788.851375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.372 5.372 3 N -0.333 5.333 4 C 0.043 3.957 5 C -0.291 4.291 6 C 0.099 3.901 7 C 0.081 3.919 8 N -0.481 5.481 9 C 0.021 3.979 10 C 0.020 3.980 11 C -0.527 4.527 12 H 0.064 0.936 13 C 0.013 3.987 14 N -0.924 5.924 15 Si 0.958 3.042 16 H -0.261 1.261 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.014 3.986 20 H 0.092 0.908 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.210 0.790 24 H 0.149 0.851 25 H 0.101 0.899 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.038 0.962 29 H 0.027 0.973 30 H 0.262 0.738 31 H 0.079 0.921 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.392 7.140 -10.428 13.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.155 5.155 3 N -0.156 5.156 4 C -0.141 4.141 5 C -0.321 4.321 6 C -0.030 4.030 7 C -0.049 4.049 8 N -0.203 5.203 9 C -0.108 4.108 10 C 0.000 4.000 11 C -0.565 4.565 12 H 0.082 0.918 13 C -0.186 4.186 14 N -0.563 5.563 15 Si 0.783 3.217 16 H -0.185 1.185 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.115 4.115 20 H 0.111 0.889 21 H 0.112 0.888 22 H 0.111 0.889 23 H 0.227 0.773 24 H 0.167 0.833 25 H 0.119 0.881 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.570 8.776 -9.991 14.062 hybrid contribution 1.515 -2.012 0.012 2.519 sum -3.055 6.764 -9.979 12.437 Atomic orbital electron populations 1.22076 0.72869 1.05249 1.04373 1.48687 1.07578 1.02876 1.56333 1.77213 1.02646 1.09087 1.26608 1.24251 0.95680 0.95147 0.99044 1.21519 0.96763 0.95737 1.18052 1.21098 0.91504 0.90478 0.99955 1.21275 1.02114 0.88779 0.92726 1.68805 1.13131 1.23539 1.14858 1.23846 0.93683 0.95409 0.97861 1.20038 0.93026 0.93669 0.93230 1.21417 1.29338 0.97528 1.08211 0.91792 1.25846 0.96462 1.01473 0.94807 1.70112 1.36384 1.37653 1.12177 0.85510 0.77894 0.79983 0.78297 1.18494 1.20808 1.20814 1.23865 0.99340 0.88816 0.99438 0.88944 0.88823 0.88871 0.77308 0.83322 0.88125 0.90888 0.92356 0.94379 0.95508 0.92934 0.90223 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.06 11.16 127.77 1.43 3.48 16 2 N -0.37 -11.23 4.01 -356.02 -1.43 -12.66 16 3 N -0.33 -10.63 12.58 -57.02 -0.72 -11.35 16 4 C 0.04 1.24 12.03 85.24 1.03 2.27 16 5 C -0.29 -9.00 10.72 21.99 0.24 -8.76 16 6 C 0.10 3.12 6.52 41.40 0.27 3.39 16 7 C 0.08 2.45 4.75 85.56 0.41 2.86 16 8 N -0.48 -18.03 6.32 -932.51 -5.89 -23.92 16 9 C 0.02 0.96 7.28 83.58 0.61 1.56 16 10 C 0.02 0.96 3.76 -11.20 -0.04 0.92 16 11 C -0.53 -27.80 8.83 25.60 0.23 -27.57 16 12 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 13 C 0.01 0.72 5.46 84.65 0.46 1.18 16 14 N -0.92 -53.84 13.26 21.45 0.28 -53.56 16 15 Si 0.96 42.27 29.54 68.60 2.03 44.30 16 16 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 C 0.01 0.52 7.25 83.58 0.61 1.13 16 20 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 21 H 0.09 2.01 7.78 -2.38 -0.02 1.99 16 22 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.21 4.29 8.06 -2.91 -0.02 4.27 16 24 H 0.15 4.29 8.06 -2.91 -0.02 4.26 16 25 H 0.10 2.52 7.92 -2.38 -0.02 2.50 16 26 H 0.07 2.18 7.30 -2.39 -0.02 2.17 16 27 H 0.06 2.57 7.38 -2.39 -0.02 2.55 16 28 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.03 1.50 8.11 -2.39 -0.02 1.48 16 30 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.07 2.51 7.87 -2.39 -0.02 2.49 16 Total: -1.00 -64.19 275.94 0.59 -63.60 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 1.09 Total: 13.13 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 5.22 Total: -19.55 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -7.75 Total: -101.48 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -64.19 0.59 -63.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597192951.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.195 kcal (2) G-P(sol) polarization free energy of solvation -64.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds