Wall clock time and date at job start Sun Mar 29 2020 22:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30833 * 125.90276 * 2 1 4 4 N 1.40085 * 108.20858 * 180.02562 * 3 2 1 5 5 H 0.97001 * 126.03109 * 180.02562 * 4 3 2 6 6 C 1.34945 * 107.92516 * 0.02562 * 4 3 2 7 7 C 1.35319 * 107.74770 * 359.97438 * 6 4 3 8 8 C 1.50697 * 126.04107 * 179.97438 * 7 6 4 9 9 N 1.46904 * 109.47268 * 260.02699 * 8 7 6 10 10 C 1.47471 * 111.00070 * 265.97424 * 9 8 7 11 11 C 1.53517 * 87.93182 * 221.29542 * 10 9 8 12 12 C 1.50695 * 114.34391 * 139.68028 * 11 10 9 13 13 H 1.07996 * 120.00633 * 266.07492 * 12 11 10 14 14 C 1.37881 * 119.99910 * 86.07825 * 12 11 10 15 15 N 1.31517 * 119.99774 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00020 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47094 * 90.00102 * 16 14 12 18 18 H 1.48504 * 109.47034 * 210.00199 * 16 14 12 19 19 H 1.48498 * 109.47177 * 330.00091 * 16 14 12 20 20 C 1.47474 * 110.99823 * 169.99665 * 9 8 7 21 21 H 1.08994 * 109.47140 * 90.02832 * 1 2 3 22 22 H 1.09000 * 109.46925 * 210.02877 * 1 2 3 23 23 H 1.08998 * 109.46805 * 330.02021 * 1 2 3 24 24 H 1.07994 * 126.12681 * 180.02562 * 6 4 3 25 25 H 1.09005 * 109.47080 * 20.02976 * 8 7 6 26 26 H 1.08999 * 109.47082 * 140.03127 * 8 7 6 27 27 H 1.09000 * 113.47972 * 336.06092 * 10 9 8 28 28 H 1.09000 * 113.48121 * 106.52823 * 10 9 8 29 29 H 1.09002 * 114.16988 * 272.37825 * 11 10 9 30 30 H 0.97006 * 119.99557 * 180.02562 * 15 14 12 31 31 H 1.08997 * 113.48369 * 253.46996 * 20 9 8 32 32 H 1.08999 * 113.48133 * 23.88611 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 1 4.3908 1.2079 -0.0004 6 6 3.6142 -0.7154 -0.0015 7 6 2.3271 -1.1331 -0.0009 8 6 1.8599 -2.5658 -0.0022 9 7 1.4789 -2.9555 -1.3664 10 6 0.0332 -2.7650 -1.5861 11 6 0.0281 -4.1023 -2.3401 12 6 -1.1728 -4.9685 -2.0604 13 1 -1.1256 -5.7250 -1.2911 14 6 -2.3320 -4.7954 -2.7867 15 7 -2.3893 -3.8746 -3.7240 16 14 -3.8204 -5.8697 -2.4404 17 1 -4.6669 -5.2239 -1.4053 18 1 -4.6079 -6.0413 -3.6877 19 1 -3.3695 -7.1980 -1.9531 20 6 1.2442 -4.4088 -1.4547 21 1 -0.3633 -0.0005 -1.0276 22 1 -0.3633 -0.8897 0.5143 23 1 -0.3633 0.8902 0.5135 24 1 4.4891 -1.3486 -0.0018 25 1 2.6655 -3.2110 0.3485 26 1 0.9990 -2.6678 0.6586 27 1 -0.5519 -2.7827 -0.6667 28 1 -0.2008 -1.9089 -2.2189 29 1 0.2593 -4.0168 -3.4019 30 1 -3.2050 -3.7526 -4.2347 31 1 2.0365 -4.9458 -1.9762 32 1 0.9833 -4.8654 -0.5000 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597193647.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:04 Heat of formation + Delta-G solvation = 103.838742 kcal Electronic energy + Delta-G solvation = -14845.216781 eV Core-core repulsion = 12422.377547 eV Total energy + Delta-G solvation = -2422.839234 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.00721 -38.69331 -33.14241 -32.48034 -31.31980 -28.18185 -27.59411 -25.28157 -24.63768 -22.38911 -20.62502 -19.16456 -18.54183 -17.57342 -16.43808 -15.08741 -14.54872 -14.31073 -14.17224 -13.73990 -13.61294 -12.87560 -12.48770 -12.17049 -11.92002 -11.82086 -11.54898 -11.21727 -10.94684 -10.68533 -10.36851 -10.04042 -9.70280 -9.27583 -9.11488 -8.87602 -8.42111 -8.16693 -7.86358 -6.02068 -4.06396 2.09985 2.99390 3.08065 3.30628 3.37939 3.40730 4.42994 4.91061 5.00759 5.22149 5.27854 5.51043 5.55978 5.73433 5.94911 6.02947 6.16132 6.21572 6.25959 6.38365 6.43601 6.57363 6.73492 6.82688 6.92436 7.22869 7.29107 7.46889 7.76885 7.91034 7.95967 8.17560 8.41837 8.96879 9.58367 11.07447 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.048944 B = 0.006608 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.939520 B = 4236.000582 C = 4526.332058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.092 3.908 3 N -0.306 5.306 4 N -0.486 5.486 5 H 0.435 0.565 6 C 0.059 3.941 7 C -0.207 4.207 8 C 0.094 3.906 9 N -0.480 5.480 10 C 0.010 3.990 11 C 0.039 3.961 12 C -0.515 4.515 13 H 0.057 0.943 14 C 0.067 3.933 15 N -0.886 5.886 16 Si 0.890 3.110 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.007 4.007 21 H 0.083 0.917 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.172 0.828 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.261 0.739 31 H 0.060 0.940 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.952 5.201 7.696 12.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.075 4.075 3 N -0.131 5.131 4 N -0.194 5.194 5 H 0.278 0.722 6 C -0.088 4.088 7 C -0.219 4.219 8 C -0.035 4.035 9 N -0.202 5.202 10 C -0.119 4.119 11 C 0.020 3.980 12 C -0.554 4.554 13 H 0.075 0.925 14 C -0.136 4.136 15 N -0.523 5.523 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.136 4.136 21 H 0.102 0.898 22 H 0.096 0.904 23 H 0.085 0.915 24 H 0.189 0.811 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.373 6.869 7.154 13.646 hybrid contribution -0.813 -1.410 0.764 1.798 sum 8.559 5.460 7.919 12.875 Atomic orbital electron populations 1.20280 0.86702 1.02747 1.03697 1.22270 0.97011 0.90230 0.97980 1.77206 0.86711 1.22660 1.26505 1.46077 1.07135 1.05383 1.60779 0.72222 1.22272 0.99225 0.85073 1.02220 1.19940 0.91630 0.96253 1.14062 1.20864 0.99425 0.90412 0.92821 1.68915 1.19878 1.09773 1.21634 1.24091 0.85999 1.02029 0.99788 1.20107 0.91211 0.91464 0.95217 1.21039 0.96620 1.18507 1.19192 0.92477 1.25012 0.98745 0.95162 0.94655 1.69975 1.27603 1.32668 1.22104 0.86640 0.82912 0.81005 0.77710 1.20652 1.21206 1.19864 1.24005 0.99942 0.89411 1.00219 0.89811 0.90358 0.91495 0.81113 0.91636 0.93517 0.92854 0.92017 0.91967 0.92908 0.92192 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 9.19 36.01 0.33 -0.83 16 2 C 0.09 1.55 7.22 -82.40 -0.59 0.95 16 3 N -0.31 -5.02 12.70 33.67 0.43 -4.60 16 4 N -0.49 -6.29 7.36 30.44 0.22 -6.07 16 5 H 0.43 3.90 8.96 -182.61 -1.64 2.26 16 6 C 0.06 0.79 11.90 -17.22 -0.20 0.58 16 7 C -0.21 -3.36 5.68 -105.05 -0.60 -3.96 16 8 C 0.09 1.60 5.02 -4.98 -0.02 1.57 16 9 N -0.48 -9.68 6.32 -246.10 -1.55 -11.23 16 10 C 0.01 0.22 6.06 -7.55 -0.05 0.17 16 11 C 0.04 0.97 3.76 -91.24 -0.34 0.63 16 12 C -0.52 -13.89 8.83 -34.44 -0.30 -14.19 16 13 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 14 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 15 N -0.89 -25.46 13.26 55.43 0.74 -24.73 16 16 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 C -0.01 -0.15 7.25 -7.55 -0.05 -0.20 16 21 H 0.08 1.37 7.55 -51.93 -0.39 0.98 16 22 H 0.08 1.18 6.86 -51.93 -0.36 0.82 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 25 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 26 H 0.05 0.80 6.76 -51.93 -0.35 0.45 16 27 H 0.05 1.19 6.80 -51.93 -0.35 0.84 16 28 H 0.06 1.47 7.62 -51.93 -0.40 1.07 16 29 H 0.06 1.72 8.11 -51.93 -0.42 1.30 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.05 1.06 7.87 -51.93 -0.41 0.66 16 LS Contribution 269.93 15.07 4.07 4.07 Total: -1.00 -30.63 269.93 -8.60 -39.24 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.55 Total: 0.99 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -1.94 Total: -13.53 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -0.17 Total: -46.63 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.63 -8.60 -39.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597193647.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.077 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds