Wall clock time and date at job start Sun Mar 29 2020 22:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30833 * 125.90276 * 2 1 4 4 N 1.40085 * 108.20858 * 180.02562 * 3 2 1 5 5 H 0.97001 * 126.03109 * 180.02562 * 4 3 2 6 6 C 1.34945 * 107.92516 * 0.02562 * 4 3 2 7 7 C 1.35319 * 107.74770 * 359.97438 * 6 4 3 8 8 C 1.50697 * 126.04107 * 179.97438 * 7 6 4 9 9 N 1.46904 * 109.47268 * 260.02699 * 8 7 6 10 10 C 1.47471 * 111.00070 * 265.97424 * 9 8 7 11 11 C 1.53517 * 87.93182 * 221.29542 * 10 9 8 12 12 C 1.50695 * 114.34391 * 139.68028 * 11 10 9 13 13 H 1.07996 * 120.00633 * 266.07492 * 12 11 10 14 14 C 1.37881 * 119.99910 * 86.07825 * 12 11 10 15 15 N 1.31517 * 119.99774 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00020 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47094 * 90.00102 * 16 14 12 18 18 H 1.48504 * 109.47034 * 210.00199 * 16 14 12 19 19 H 1.48498 * 109.47177 * 330.00091 * 16 14 12 20 20 C 1.47474 * 110.99823 * 169.99665 * 9 8 7 21 21 H 1.08994 * 109.47140 * 90.02832 * 1 2 3 22 22 H 1.09000 * 109.46925 * 210.02877 * 1 2 3 23 23 H 1.08998 * 109.46805 * 330.02021 * 1 2 3 24 24 H 1.07994 * 126.12681 * 180.02562 * 6 4 3 25 25 H 1.09005 * 109.47080 * 20.02976 * 8 7 6 26 26 H 1.08999 * 109.47082 * 140.03127 * 8 7 6 27 27 H 1.09000 * 113.47972 * 336.06092 * 10 9 8 28 28 H 1.09000 * 113.48121 * 106.52823 * 10 9 8 29 29 H 1.09002 * 114.16988 * 272.37825 * 11 10 9 30 30 H 0.97006 * 119.99557 * 180.02562 * 15 14 12 31 31 H 1.08997 * 113.48369 * 253.46996 * 20 9 8 32 32 H 1.08999 * 113.48133 * 23.88611 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 1 4.3908 1.2079 -0.0004 6 6 3.6142 -0.7154 -0.0015 7 6 2.3271 -1.1331 -0.0009 8 6 1.8599 -2.5658 -0.0022 9 7 1.4789 -2.9555 -1.3664 10 6 0.0332 -2.7650 -1.5861 11 6 0.0281 -4.1023 -2.3401 12 6 -1.1728 -4.9685 -2.0604 13 1 -1.1256 -5.7250 -1.2911 14 6 -2.3320 -4.7954 -2.7867 15 7 -2.3893 -3.8746 -3.7240 16 14 -3.8204 -5.8697 -2.4404 17 1 -4.6669 -5.2239 -1.4053 18 1 -4.6079 -6.0413 -3.6877 19 1 -3.3695 -7.1980 -1.9531 20 6 1.2442 -4.4088 -1.4547 21 1 -0.3633 -0.0005 -1.0276 22 1 -0.3633 -0.8897 0.5143 23 1 -0.3633 0.8902 0.5135 24 1 4.4891 -1.3486 -0.0018 25 1 2.6655 -3.2110 0.3485 26 1 0.9990 -2.6678 0.6586 27 1 -0.5519 -2.7827 -0.6667 28 1 -0.2008 -1.9089 -2.2189 29 1 0.2593 -4.0168 -3.4019 30 1 -3.2050 -3.7526 -4.2347 31 1 2.0365 -4.9458 -1.9762 32 1 0.9833 -4.8654 -0.5000 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597193647.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:04 Heat of formation + Delta-G solvation = 81.374410 kcal Electronic energy + Delta-G solvation = -14846.190907 eV Core-core repulsion = 12422.377547 eV Total energy + Delta-G solvation = -2423.813361 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.16695 -40.38210 -34.87305 -33.93178 -32.72703 -29.74319 -28.86462 -27.01528 -26.37807 -24.02579 -21.80447 -20.49293 -20.23842 -18.90802 -18.24427 -16.73207 -16.32088 -15.81460 -15.50604 -15.32753 -14.95092 -14.20839 -13.84973 -13.73370 -13.55108 -13.16239 -13.07213 -12.92798 -12.77097 -12.41318 -12.10182 -11.56379 -11.31981 -11.16013 -10.79003 -10.44137 -10.26324 -9.61787 -9.31106 -8.10210 -6.21287 0.99493 1.45840 1.46688 1.57037 1.76934 2.09484 2.46556 3.19369 3.57816 3.77328 3.96073 4.26341 4.36288 4.42108 4.50133 4.66250 4.67595 4.79142 4.84860 4.96496 5.00675 5.04789 5.07307 5.19383 5.34851 5.66209 5.68644 5.72416 5.91326 6.35962 6.52547 6.53515 6.78001 6.88680 7.47123 8.99504 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.048944 B = 0.006608 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.939520 B = 4236.000582 C = 4526.332058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.072 3.928 3 N -0.334 5.334 4 N -0.471 5.471 5 H 0.453 0.547 6 C 0.084 3.916 7 C -0.244 4.244 8 C 0.099 3.901 9 N -0.480 5.480 10 C 0.028 3.972 11 C 0.015 3.985 12 C -0.527 4.527 13 H 0.061 0.939 14 C 0.014 3.986 15 N -0.924 5.924 16 Si 0.956 3.044 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.264 1.264 20 C 0.010 3.990 21 H 0.065 0.935 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.214 0.786 25 H 0.092 0.908 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.037 0.963 29 H 0.025 0.975 30 H 0.261 0.739 31 H 0.073 0.927 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.272 4.667 9.132 14.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.094 4.094 3 N -0.159 5.159 4 N -0.180 5.180 5 H 0.300 0.700 6 C -0.065 4.065 7 C -0.255 4.255 8 C -0.030 4.030 9 N -0.202 5.202 10 C -0.101 4.101 11 C -0.004 4.004 12 C -0.565 4.565 13 H 0.079 0.921 14 C -0.185 4.185 15 N -0.563 5.563 16 Si 0.782 3.218 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.189 1.189 20 C -0.119 4.119 21 H 0.084 0.916 22 H 0.095 0.905 23 H 0.100 0.900 24 H 0.231 0.769 25 H 0.110 0.890 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.716 6.353 8.605 15.141 hybrid contribution -1.101 -1.195 0.318 1.656 sum 9.615 5.157 8.924 14.096 Atomic orbital electron populations 1.20217 0.86831 1.03390 1.02670 1.22453 0.97450 0.90890 0.98567 1.77141 0.88179 1.23056 1.27562 1.46132 1.06812 1.05885 1.59169 0.70047 1.22838 0.99511 0.85245 0.98877 1.20017 0.92926 0.95613 1.16967 1.20840 1.00093 0.91604 0.90453 1.68850 1.17704 1.09144 1.24524 1.23755 0.87959 0.99555 0.98845 1.20079 0.92951 0.93299 0.94043 1.21388 0.97434 1.18638 1.19062 0.92093 1.25825 1.01734 0.96427 0.94495 1.70112 1.28373 1.34463 1.23322 0.85585 0.79257 0.79504 0.77493 1.19983 1.21223 1.18862 1.23824 0.98200 0.90190 0.99686 0.91612 0.90531 0.90047 0.76949 0.89006 0.93970 0.92876 0.94397 0.95710 0.92984 0.90865 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.26 9.19 71.24 0.65 -1.61 16 2 C 0.07 2.38 7.22 43.10 0.31 2.69 16 3 N -0.33 -10.51 12.70 -47.38 -0.60 -11.11 16 4 N -0.47 -10.85 7.36 -57.59 -0.42 -11.27 16 5 H 0.45 6.67 8.96 -213.33 -1.91 4.76 16 6 C 0.08 1.93 11.90 83.54 0.99 2.93 16 7 C -0.24 -7.39 5.68 -20.14 -0.11 -7.51 16 8 C 0.10 3.14 5.02 85.56 0.43 3.57 16 9 N -0.48 -18.89 6.32 -932.51 -5.89 -24.78 16 10 C 0.03 1.29 6.06 83.58 0.51 1.80 16 11 C 0.02 0.78 3.76 -11.19 -0.04 0.74 16 12 C -0.53 -28.58 8.83 25.60 0.23 -28.35 16 13 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 14 C 0.01 0.79 5.46 84.66 0.46 1.25 16 15 N -0.92 -54.45 13.26 21.45 0.28 -54.17 16 16 Si 0.96 42.96 29.54 68.60 2.03 44.99 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 20 C 0.01 0.39 7.25 83.58 0.61 1.00 16 21 H 0.07 2.25 7.55 -2.39 -0.02 2.24 16 22 H 0.08 2.35 6.86 -2.39 -0.02 2.33 16 23 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.21 2.98 8.06 -2.91 -0.02 2.96 16 25 H 0.09 2.43 8.08 -2.38 -0.02 2.41 16 26 H 0.04 1.38 6.76 -2.39 -0.02 1.36 16 27 H 0.05 2.40 6.80 -2.39 -0.02 2.39 16 28 H 0.04 1.88 7.62 -2.39 -0.02 1.86 16 29 H 0.02 1.42 8.11 -2.39 -0.02 1.41 16 30 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 31 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.06 2.46 7.87 -2.39 -0.02 2.44 16 Total: -1.00 -66.37 269.93 -1.36 -67.73 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -0.79 Total: 12.10 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: 4.03 Total: -23.49 kcal Atomic # 7 Polarization: -94.69 SS G_CDS: -6.63 Total: -101.32 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -66.37 -1.36 -67.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597193647.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.103 kcal (2) G-P(sol) polarization free energy of solvation -66.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds