Wall clock time and date at job start Sun Mar 29 2020 21:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34512 * 125.79398 * 2 1 4 4 C 1.41377 * 106.84362 * 180.02562 * 3 2 1 5 5 C 1.34505 * 106.84292 * 359.97438 * 4 3 2 6 6 C 1.50702 * 125.79250 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.47267 * 89.99801 * 6 5 4 8 8 C 1.47961 * 111.00005 * 189.99947 * 7 6 5 9 9 C 1.53934 * 86.17939 * 137.58072 * 8 7 6 10 10 C 1.50703 * 113.73399 * 221.81705 * 9 8 7 11 11 H 1.07999 * 119.99920 * 358.09577 * 10 9 8 12 12 C 1.37877 * 119.99669 * 178.10223 * 10 9 8 13 13 N 1.31510 * 120.00506 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99624 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47293 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47387 * 119.99775 * 14 12 10 17 17 H 1.48498 * 109.47096 * 240.00236 * 14 12 10 18 18 C 1.48296 * 111.00409 * 289.35248 * 7 6 5 19 19 O 1.34303 * 108.41983 * 0.26286 * 5 4 3 20 20 H 1.08996 * 109.47097 * 90.00366 * 1 2 3 21 21 H 1.09001 * 109.47618 * 210.00688 * 1 2 3 22 22 H 1.09006 * 109.46893 * 330.00294 * 1 2 3 23 23 H 1.08008 * 126.57862 * 0.02562 * 3 2 1 24 24 H 1.08006 * 126.57918 * 180.02562 * 4 3 2 25 25 H 1.08997 * 109.47111 * 329.99567 * 6 5 4 26 26 H 1.09007 * 109.47191 * 209.99730 * 6 5 4 27 27 H 1.09007 * 113.75652 * 23.26342 * 8 7 6 28 28 H 1.08993 * 113.76177 * 251.90248 * 8 7 6 29 29 H 1.09002 * 113.73279 * 90.64057 * 9 8 7 30 30 H 0.96995 * 120.00309 * 180.02562 * 13 12 10 31 31 H 1.09001 * 113.86054 * 108.14174 * 18 7 6 32 32 H 1.09000 * 113.76062 * 336.68481 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6319 -0.0006 5 6 3.5814 -0.7122 -0.0004 6 6 4.7705 -1.6379 -0.0003 7 7 5.1571 -1.9385 1.3848 8 6 6.4559 -2.6456 1.4312 9 6 6.7963 -1.7277 2.6192 10 6 8.2075 -1.1995 2.5926 11 1 8.8817 -1.4997 1.8042 12 6 8.6378 -0.3330 3.5750 13 7 7.8170 0.0321 4.5355 14 14 10.3872 0.3212 3.5426 15 1 11.1034 -0.2387 2.3684 16 1 10.3599 1.8028 3.4459 17 1 11.0892 -0.0809 4.7878 18 6 5.7580 -0.7508 2.0385 19 8 2.2924 -1.0894 -0.0055 20 1 -0.3633 -0.0001 -1.0276 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3633 0.8901 0.5138 23 1 1.9666 2.1204 0.0004 24 1 4.5213 1.2432 -0.0004 25 1 5.6039 -1.1590 -0.5143 26 1 4.5105 -2.5636 -0.5139 27 1 7.0794 -2.4770 0.5531 28 1 6.3733 -3.6988 1.6995 29 1 6.5158 -2.1415 3.5878 30 1 8.1196 0.6419 5.2264 31 1 5.1182 -0.2911 2.7918 32 1 6.1778 -0.0291 1.3378 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597194327.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:23 Heat of formation + Delta-G solvation = 22.746093 kcal Electronic energy + Delta-G solvation = -14677.468635 eV Core-core repulsion = 12218.820208 eV Total energy + Delta-G solvation = -2458.648427 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.52807 -40.41845 -34.92875 -34.09874 -33.51657 -31.17589 -28.37241 -26.84086 -26.05685 -23.75292 -22.67076 -21.07996 -20.43954 -18.69408 -17.53136 -17.28715 -16.61257 -16.37077 -15.68136 -15.62906 -14.53776 -14.36680 -13.89404 -13.81237 -13.76811 -13.67036 -13.31436 -13.05028 -12.86585 -12.72472 -12.35540 -12.09094 -11.69496 -11.19494 -11.01082 -10.79770 -10.54427 -9.70074 -9.18823 -8.15169 -6.27301 0.73506 1.41870 1.43791 1.55342 1.64935 1.98570 2.42493 3.14762 3.25935 3.68893 4.00992 4.11277 4.14493 4.27694 4.39276 4.51981 4.59220 4.69305 4.73149 4.81721 4.85548 4.91976 4.94740 5.06228 5.20731 5.27805 5.43973 5.62307 5.64284 5.83389 6.22433 6.27781 6.29813 6.82396 7.41784 8.94751 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046705 B = 0.006200 C = 0.005870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.361673 B = 4514.705968 C = 4769.269885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.027 4.027 3 C -0.225 4.225 4 C -0.216 4.216 5 C -0.016 4.016 6 C 0.100 3.900 7 N -0.494 5.494 8 C 0.016 3.984 9 C 0.018 3.982 10 C -0.531 4.531 11 H 0.063 0.937 12 C 0.014 3.986 13 N -0.924 5.924 14 Si 0.959 3.041 15 H -0.262 1.262 16 H -0.281 1.281 17 H -0.281 1.281 18 C 0.034 3.966 19 O -0.188 6.188 20 H 0.099 0.901 21 H 0.079 0.921 22 H 0.107 0.893 23 H 0.169 0.831 24 H 0.144 0.856 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.023 0.977 30 H 0.262 0.738 31 H 0.040 0.960 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.472 0.764 -10.327 14.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.077 4.077 3 C -0.244 4.244 4 C -0.236 4.236 5 C -0.066 4.066 6 C -0.028 4.028 7 N -0.217 5.217 8 C -0.112 4.112 9 C -0.001 4.001 10 C -0.569 4.569 11 H 0.082 0.918 12 C -0.185 4.185 13 N -0.562 5.562 14 Si 0.784 3.216 15 H -0.186 1.186 16 H -0.207 1.207 17 H -0.207 1.207 18 C -0.095 4.095 19 O -0.086 6.086 20 H 0.117 0.883 21 H 0.098 0.902 22 H 0.125 0.875 23 H 0.186 0.814 24 H 0.162 0.838 25 H 0.094 0.906 26 H 0.119 0.881 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.183 0.248 -9.926 14.955 hybrid contribution 1.654 1.112 0.025 1.994 sum -9.529 1.360 -9.901 13.809 Atomic orbital electron populations 1.20476 0.81992 1.05118 1.04831 1.23309 0.95793 0.83645 1.04938 1.21846 0.91968 1.00616 1.09935 1.21806 0.99215 0.94102 1.08504 1.22342 0.83103 0.94658 1.06530 1.21088 0.90920 0.97946 0.92850 1.68657 1.26348 1.13634 1.13107 1.23987 0.88669 0.99179 0.99365 1.20317 0.93938 0.92545 0.93296 1.21463 0.97573 1.27274 1.10569 0.91849 1.25845 1.01367 0.96588 0.94739 1.70110 1.37243 1.34722 1.14159 0.85499 0.79907 0.77935 0.78285 1.18564 1.20724 1.20673 1.23763 0.95658 0.93240 0.96879 1.83932 1.16598 1.36216 1.71824 0.88301 0.90233 0.87496 0.81368 0.83833 0.90589 0.88135 0.90866 0.89732 0.95839 0.92894 0.94152 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.42 71.23 0.74 -0.41 16 2 C -0.03 -0.75 7.32 24.83 0.18 -0.57 16 3 C -0.22 -6.51 10.81 22.19 0.24 -6.27 16 4 C -0.22 -7.35 10.42 22.19 0.23 -7.12 16 5 C -0.02 -0.58 6.48 24.83 0.16 -0.42 16 6 C 0.10 3.46 5.36 85.56 0.46 3.92 16 7 N -0.49 -20.62 6.26 -911.59 -5.71 -26.32 16 8 C 0.02 0.66 7.53 86.41 0.65 1.31 16 9 C 0.02 0.93 3.60 -10.89 -0.04 0.89 16 10 C -0.53 -28.87 8.77 25.60 0.22 -28.64 16 11 H 0.06 3.31 7.81 -2.91 -0.02 3.29 16 12 C 0.01 0.76 5.46 84.66 0.46 1.23 16 13 N -0.92 -54.59 13.29 21.45 0.28 -54.30 16 14 Si 0.96 43.05 29.54 68.60 2.03 45.08 16 15 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 16 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 C 0.03 1.61 6.74 86.34 0.58 2.19 16 19 O -0.19 -6.49 10.65 -2.52 -0.03 -6.51 16 20 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 21 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 22 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 23 H 0.17 3.82 8.06 -2.91 -0.02 3.80 16 24 H 0.14 4.77 8.06 -2.91 -0.02 4.75 16 25 H 0.08 2.49 7.69 -2.39 -0.02 2.48 16 26 H 0.10 3.06 8.14 -2.38 -0.02 3.04 16 27 H 0.07 2.79 7.74 -2.38 -0.02 2.77 16 28 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 29 H 0.02 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 31 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.05 2.56 7.74 -2.39 -0.02 2.54 16 Total: -1.00 -64.47 276.35 1.56 -62.90 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 1.09 Total: 13.04 kcal Atomic # 6 Polarization: -37.78 SS G_CDS: 3.89 Total: -33.89 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -5.42 Total: -80.63 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.03 Total: -6.51 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -64.47 1.56 -62.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597194327.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.650 kcal (2) G-P(sol) polarization free energy of solvation -64.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds