Wall clock time and date at job start Sun Mar 29 2020 22:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34953 * 126.03718 * 2 1 4 4 C 1.35312 * 107.74266 * 180.24977 * 3 2 1 5 5 C 1.39863 * 107.92527 * 359.64076 * 4 3 2 6 6 C 1.50703 * 125.90145 * 180.14385 * 5 4 3 7 7 N 1.46905 * 109.46965 * 95.23369 * 6 5 4 8 8 C 1.47481 * 110.99748 * 265.97249 * 7 6 5 9 9 C 1.53516 * 87.93007 * 221.30076 * 8 7 6 10 10 C 1.50694 * 114.34582 * 139.68636 * 9 8 7 11 11 H 1.08003 * 119.99638 * 266.07641 * 10 9 8 12 12 C 1.37876 * 120.00156 * 86.07186 * 10 9 8 13 13 N 1.31512 * 120.00170 * 359.97438 * 12 10 9 14 14 Si 1.86810 * 119.99816 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46970 * 90.00423 * 14 12 10 16 16 H 1.48497 * 109.46761 * 209.99775 * 14 12 10 17 17 H 1.48490 * 109.47205 * 329.99932 * 14 12 10 18 18 C 1.47478 * 110.99724 * 170.00202 * 7 6 5 19 19 N 1.30837 * 108.19940 * 0.36269 * 5 4 3 20 20 H 1.09000 * 109.47401 * 90.00011 * 1 2 3 21 21 H 1.09001 * 109.46893 * 210.00586 * 1 2 3 22 22 H 1.08998 * 109.47086 * 329.99760 * 1 2 3 23 23 H 1.08002 * 126.12372 * 359.97438 * 3 2 1 24 24 H 1.08008 * 126.03698 * 179.76435 * 4 3 2 25 25 H 1.09001 * 109.47131 * 215.23144 * 6 5 4 26 26 H 1.08998 * 109.46844 * 335.23437 * 6 5 4 27 27 H 1.09007 * 113.47459 * 336.06203 * 8 7 6 28 28 H 1.08995 * 113.47617 * 106.53485 * 8 7 6 29 29 H 1.09005 * 114.16679 * 272.37865 * 9 8 7 30 30 H 0.96998 * 120.00203 * 179.97438 * 13 12 10 31 31 H 1.09002 * 113.47408 * 253.46713 * 18 7 6 32 32 H 1.09003 * 113.47886 * 23.87582 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6665 -0.0056 5 6 3.5347 -0.7321 -0.0008 6 6 4.7497 -1.6236 -0.0014 7 7 5.0739 -2.0104 1.3782 8 6 6.0751 -1.0981 1.9615 9 6 6.7526 -2.3280 2.5821 10 6 8.2585 -2.2968 2.5367 11 1 8.7841 -2.7699 1.7203 12 6 8.9655 -1.6643 3.5373 13 7 8.3255 -1.0877 4.5311 14 14 10.8323 -1.6250 3.4806 15 1 11.2797 -0.4170 2.7419 16 1 11.3687 -1.5858 4.8647 17 1 11.3322 -2.8409 2.7902 18 6 6.1033 -3.0662 1.4030 19 7 2.2892 -1.1327 -0.0005 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5139 23 1 1.9281 2.1194 -0.0004 24 1 4.4211 1.2963 -0.0107 25 1 4.5443 -2.5173 -0.5906 26 1 5.5934 -1.0876 -0.4363 27 1 6.6898 -0.5939 1.2157 28 1 5.6597 -0.4124 2.6999 29 1 6.3572 -2.6105 3.5578 30 1 8.8228 -0.6430 5.2352 31 1 5.7118 -4.0483 1.6682 32 1 6.7248 -3.0878 0.5078 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597194434.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:16 Heat of formation + Delta-G solvation = 116.372672 kcal Electronic energy + Delta-G solvation = -14509.980492 eV Core-core repulsion = 12087.684770 eV Total energy + Delta-G solvation = -2422.295722 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.90427 -38.72731 -33.66872 -32.50878 -30.22991 -29.48966 -26.78942 -25.07478 -24.64218 -22.41803 -20.90770 -19.34129 -18.52975 -16.89121 -16.43345 -15.35587 -14.77636 -14.48652 -14.24110 -13.95669 -13.67681 -12.85050 -12.75115 -12.53766 -12.28345 -11.85623 -11.53657 -11.11522 -10.93763 -10.64658 -10.38391 -10.10213 -9.75123 -9.35733 -8.92464 -8.83709 -8.40010 -8.31829 -7.91546 -6.01307 -4.05814 2.09776 2.69419 3.07391 3.31400 3.38464 3.41626 4.43646 4.58982 4.90475 5.06177 5.09926 5.23062 5.29844 5.33154 5.59679 5.83100 5.97721 6.03797 6.18638 6.31866 6.41242 6.55495 6.74787 6.79679 6.90123 7.19124 7.22638 7.27134 7.77467 7.95569 8.01166 8.14958 8.42234 8.97564 9.58967 11.08336 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.058818 B = 0.005542 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.926510 B = 5051.029178 C = 5198.003337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.386 5.386 3 C 0.044 3.956 4 C -0.262 4.262 5 C 0.101 3.899 6 C 0.097 3.903 7 N -0.478 5.478 8 C 0.008 3.992 9 C 0.041 3.959 10 C -0.515 4.515 11 H 0.058 0.942 12 C 0.067 3.933 13 N -0.886 5.886 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.004 4.004 19 N -0.287 5.287 20 H 0.069 0.931 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.169 0.831 24 H 0.145 0.855 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.261 0.739 31 H 0.062 0.938 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.572 4.442 -8.964 15.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.169 5.169 3 C -0.101 4.101 4 C -0.291 4.291 5 C -0.067 4.067 6 C -0.034 4.034 7 N -0.201 5.201 8 C -0.121 4.121 9 C 0.022 3.978 10 C -0.554 4.554 11 H 0.076 0.924 12 C -0.136 4.136 13 N -0.524 5.524 14 Si 0.718 3.282 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.133 4.133 19 N -0.110 5.110 20 H 0.087 0.913 21 H 0.105 0.895 22 H 0.101 0.899 23 H 0.187 0.813 24 H 0.162 0.838 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.186 3.462 -8.507 16.069 hybrid contribution 2.096 1.215 -0.474 2.468 sum -11.090 4.677 -8.980 15.017 Atomic orbital electron populations 1.21744 0.74867 1.04200 1.02775 1.48502 1.06327 1.04059 1.58012 1.22418 0.91278 0.93206 1.03214 1.21449 0.96906 0.94772 1.16003 1.22218 0.93067 0.93667 0.97725 1.20999 0.91520 0.96684 0.94172 1.68874 1.30388 1.07752 1.13039 1.24113 0.91518 0.98213 0.98280 1.20098 0.94518 0.90010 0.93213 1.21039 0.90657 1.35512 1.08149 0.92374 1.25018 0.98338 0.95145 0.95092 1.69974 1.35469 1.35626 1.11307 0.86622 0.85820 0.78454 0.77270 1.20665 1.21199 1.19816 1.24020 0.92447 0.95889 1.00906 1.77335 1.01531 1.07219 1.24899 0.91257 0.89510 0.89876 0.81338 0.83750 0.90598 0.92109 0.92716 0.91930 0.91852 0.92905 0.91910 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.94 11.47 59.85 0.69 1.63 16 2 N -0.39 -5.53 4.01 -68.16 -0.27 -5.81 16 3 C 0.04 0.59 11.49 -17.22 -0.20 0.39 16 4 C -0.26 -4.17 10.74 -40.02 -0.43 -4.60 16 5 C 0.10 1.84 6.80 -82.41 -0.56 1.28 16 6 C 0.10 1.80 5.37 -4.97 -0.03 1.77 16 7 N -0.48 -10.34 6.32 -246.08 -1.55 -11.89 16 8 C 0.01 0.18 7.28 -7.54 -0.05 0.13 16 9 C 0.04 1.04 3.76 -91.24 -0.34 0.70 16 10 C -0.52 -14.11 8.83 -34.44 -0.30 -14.42 16 11 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 12 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 13 N -0.89 -25.82 13.26 55.43 0.74 -25.08 16 14 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 C 0.00 -0.09 7.24 -7.55 -0.05 -0.14 16 19 N -0.29 -5.24 12.58 33.67 0.42 -4.82 16 20 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 24 H 0.14 2.12 8.06 -52.48 -0.42 1.69 16 25 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 26 H 0.06 1.07 7.30 -51.93 -0.38 0.69 16 27 H 0.05 1.27 7.38 -51.93 -0.38 0.88 16 28 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.06 1.79 8.11 -51.93 -0.42 1.37 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.06 1.15 7.87 -51.93 -0.41 0.74 16 LS Contribution 277.17 15.07 4.18 4.18 Total: -1.00 -32.01 277.17 -7.41 -39.42 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -4.52 Total: -0.56 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -1.38 Total: -11.52 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -0.67 Total: -47.60 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.01 -7.41 -39.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597194434.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.796 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds