Wall clock time and date at job start Sun Mar 29 2020 22:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34953 * 126.03718 * 2 1 4 4 C 1.35312 * 107.74266 * 180.24977 * 3 2 1 5 5 C 1.39863 * 107.92527 * 359.64076 * 4 3 2 6 6 C 1.50703 * 125.90145 * 180.14385 * 5 4 3 7 7 N 1.46905 * 109.46965 * 95.23369 * 6 5 4 8 8 C 1.47481 * 110.99748 * 265.97249 * 7 6 5 9 9 C 1.53516 * 87.93007 * 221.30076 * 8 7 6 10 10 C 1.50694 * 114.34582 * 139.68636 * 9 8 7 11 11 H 1.08003 * 119.99638 * 266.07641 * 10 9 8 12 12 C 1.37876 * 120.00156 * 86.07186 * 10 9 8 13 13 N 1.31512 * 120.00170 * 359.97438 * 12 10 9 14 14 Si 1.86810 * 119.99816 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46970 * 90.00423 * 14 12 10 16 16 H 1.48497 * 109.46761 * 209.99775 * 14 12 10 17 17 H 1.48490 * 109.47205 * 329.99932 * 14 12 10 18 18 C 1.47478 * 110.99724 * 170.00202 * 7 6 5 19 19 N 1.30837 * 108.19940 * 0.36269 * 5 4 3 20 20 H 1.09000 * 109.47401 * 90.00011 * 1 2 3 21 21 H 1.09001 * 109.46893 * 210.00586 * 1 2 3 22 22 H 1.08998 * 109.47086 * 329.99760 * 1 2 3 23 23 H 1.08002 * 126.12372 * 359.97438 * 3 2 1 24 24 H 1.08008 * 126.03698 * 179.76435 * 4 3 2 25 25 H 1.09001 * 109.47131 * 215.23144 * 6 5 4 26 26 H 1.08998 * 109.46844 * 335.23437 * 6 5 4 27 27 H 1.09007 * 113.47459 * 336.06203 * 8 7 6 28 28 H 1.08995 * 113.47617 * 106.53485 * 8 7 6 29 29 H 1.09005 * 114.16679 * 272.37865 * 9 8 7 30 30 H 0.96998 * 120.00203 * 179.97438 * 13 12 10 31 31 H 1.09002 * 113.47408 * 253.46713 * 18 7 6 32 32 H 1.09003 * 113.47886 * 23.87582 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6665 -0.0056 5 6 3.5347 -0.7321 -0.0008 6 6 4.7497 -1.6236 -0.0014 7 7 5.0739 -2.0104 1.3782 8 6 6.0751 -1.0981 1.9615 9 6 6.7526 -2.3280 2.5821 10 6 8.2585 -2.2968 2.5367 11 1 8.7841 -2.7699 1.7203 12 6 8.9655 -1.6643 3.5373 13 7 8.3255 -1.0877 4.5311 14 14 10.8323 -1.6250 3.4806 15 1 11.2797 -0.4170 2.7419 16 1 11.3687 -1.5858 4.8647 17 1 11.3322 -2.8409 2.7902 18 6 6.1033 -3.0662 1.4030 19 7 2.2892 -1.1327 -0.0005 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5139 23 1 1.9281 2.1194 -0.0004 24 1 4.4211 1.2963 -0.0107 25 1 4.5443 -2.5173 -0.5906 26 1 5.5934 -1.0876 -0.4363 27 1 6.6898 -0.5939 1.2157 28 1 5.6597 -0.4124 2.6999 29 1 6.3572 -2.6105 3.5578 30 1 8.8228 -0.6430 5.2352 31 1 5.7118 -4.0483 1.6682 32 1 6.7248 -3.0878 0.5078 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597194434.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:15 Heat of formation + Delta-G solvation = 93.237230 kcal Electronic energy + Delta-G solvation = -14510.983720 eV Core-core repulsion = 12087.684770 eV Total energy + Delta-G solvation = -2423.298950 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.07335 -40.51004 -35.08330 -34.29481 -31.58755 -30.83395 -28.34334 -26.65627 -26.37479 -24.12172 -21.99241 -20.64499 -20.43917 -18.62837 -17.78115 -16.78241 -16.40609 -16.17146 -15.69059 -15.64403 -14.71971 -14.23707 -14.19039 -13.88229 -13.38113 -13.28185 -13.20139 -12.95286 -12.79112 -12.37638 -12.10784 -11.66938 -11.45569 -11.20118 -10.88020 -10.49093 -10.16043 -9.69585 -9.44526 -8.12294 -6.24178 0.97804 1.45700 1.46416 1.57324 1.73087 1.82226 2.45543 3.16855 3.44691 3.59054 3.99558 4.13213 4.21269 4.35288 4.44307 4.46903 4.57731 4.69263 4.71515 4.79847 4.88119 4.93311 4.96786 5.12536 5.25437 5.49008 5.64822 5.69326 5.86437 6.23490 6.30919 6.38772 6.81337 6.85525 7.44561 8.97844 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.058818 B = 0.005542 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.926510 B = 5051.029178 C = 5198.003337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.384 5.384 3 C 0.064 3.936 4 C -0.294 4.294 5 C 0.075 3.925 6 C 0.099 3.901 7 N -0.484 5.484 8 C 0.024 3.976 9 C 0.021 3.979 10 C -0.529 4.529 11 H 0.063 0.937 12 C 0.014 3.986 13 N -0.924 5.924 14 Si 0.960 3.040 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.264 1.264 18 C 0.011 3.989 19 N -0.328 5.328 20 H 0.090 0.910 21 H 0.082 0.918 22 H 0.118 0.882 23 H 0.218 0.782 24 H 0.149 0.851 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.026 0.974 30 H 0.262 0.738 31 H 0.072 0.928 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.080 5.352 -10.259 16.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.167 5.167 3 C -0.082 4.082 4 C -0.323 4.323 5 C -0.091 4.091 6 C -0.031 4.031 7 N -0.207 5.207 8 C -0.105 4.105 9 C 0.002 3.998 10 C -0.567 4.567 11 H 0.081 0.919 12 C -0.185 4.185 13 N -0.563 5.563 14 Si 0.785 3.215 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.188 1.188 18 C -0.117 4.117 19 N -0.152 5.152 20 H 0.108 0.892 21 H 0.101 0.899 22 H 0.136 0.864 23 H 0.235 0.765 24 H 0.167 0.833 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.713 4.350 -9.820 17.419 hybrid contribution 2.089 0.956 -0.088 2.299 sum -11.624 5.306 -9.908 16.169 Atomic orbital electron populations 1.22186 0.71901 1.05773 1.04664 1.48928 1.08010 1.03368 1.56373 1.23103 0.90185 0.94867 1.00081 1.21685 0.98630 0.94036 1.17970 1.22204 0.92976 0.94686 0.99253 1.20963 0.92461 0.97506 0.92131 1.68798 1.29517 1.06867 1.15507 1.23821 0.91704 0.97189 0.97788 1.20034 0.94271 0.92503 0.92957 1.21371 0.91656 1.35303 1.08363 0.91863 1.25859 1.03255 0.94721 0.94666 1.70112 1.37390 1.36661 1.12136 0.85523 0.79803 0.78864 0.77273 1.19871 1.21104 1.18837 1.23864 0.92196 0.96070 0.99608 1.77211 1.02011 1.09666 1.26305 0.89174 0.89914 0.86393 0.76517 0.83334 0.89735 0.91312 0.92353 0.94207 0.95566 0.92875 0.90995 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.39 11.47 127.77 1.47 2.86 16 2 N -0.38 -10.12 4.01 -369.56 -1.48 -11.61 16 3 C 0.06 1.53 11.49 83.54 0.96 2.49 16 4 C -0.29 -9.04 10.74 21.99 0.24 -8.80 16 5 C 0.07 2.69 6.80 43.10 0.29 2.99 16 6 C 0.10 3.66 5.37 85.56 0.46 4.12 16 7 N -0.48 -21.08 6.32 -932.45 -5.89 -26.97 16 8 C 0.02 1.17 7.28 83.58 0.61 1.78 16 9 C 0.02 1.13 3.76 -11.20 -0.04 1.09 16 10 C -0.53 -29.17 8.83 25.60 0.23 -28.95 16 11 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 12 C 0.01 0.79 5.46 84.65 0.46 1.25 16 13 N -0.92 -54.97 13.26 21.45 0.28 -54.68 16 14 Si 0.96 43.25 29.54 68.60 2.03 45.28 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 17 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 18 C 0.01 0.49 7.24 83.58 0.61 1.09 16 19 N -0.33 -11.71 12.58 -47.39 -0.60 -12.31 16 20 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 21 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.22 2.81 8.06 -2.91 -0.02 2.79 16 24 H 0.15 4.26 8.06 -2.91 -0.02 4.23 16 25 H 0.08 2.91 8.08 -2.39 -0.02 2.89 16 26 H 0.07 2.39 7.30 -2.39 -0.02 2.37 16 27 H 0.06 2.73 7.38 -2.38 -0.02 2.71 16 28 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.03 1.55 8.11 -2.38 -0.02 1.53 16 30 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 31 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.07 2.83 7.87 -2.39 -0.02 2.81 16 Total: -1.00 -70.18 277.17 0.71 -69.47 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 1.09 Total: 10.90 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 5.28 Total: -20.09 kcal Atomic # 7 Polarization: -97.88 SS G_CDS: -7.68 Total: -105.57 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -70.18 0.71 -69.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597194434.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.711 kcal (2) G-P(sol) polarization free energy of solvation -70.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds