Wall clock time and date at job start Sun Mar 29 2020 22:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32153 * 119.99835 * 2 1 4 4 C 1.32127 * 119.99946 * 179.70825 * 3 2 1 5 5 C 1.38386 * 119.99693 * 0.50169 * 4 3 2 6 6 N 1.32127 * 119.99506 * 359.49319 * 5 4 3 7 7 C 1.32154 * 120.00408 * 0.26639 * 6 5 4 8 8 C 1.50701 * 120.00158 * 179.97438 * 7 6 5 9 9 N 1.46890 * 109.47305 * 89.99307 * 8 7 6 10 10 C 1.46904 * 111.00059 * 293.95351 * 9 8 7 11 11 C 1.46901 * 111.00003 * 170.00361 * 9 8 7 12 12 C 1.50698 * 109.47289 * 189.99957 * 11 9 8 13 13 H 1.08004 * 120.00158 * 0.02562 * 12 11 9 14 14 C 1.37877 * 120.00369 * 179.97438 * 12 11 9 15 15 N 1.31518 * 119.99512 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00278 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46831 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47130 * 120.00022 * 16 14 12 19 19 H 1.48501 * 109.46910 * 240.00221 * 16 14 12 20 20 H 1.08994 * 109.47604 * 270.02331 * 1 2 3 21 21 H 1.09003 * 109.47107 * 30.02470 * 1 2 3 22 22 H 1.08996 * 109.46857 * 150.02109 * 1 2 3 23 23 H 1.07998 * 120.00116 * 180.25018 * 4 3 2 24 24 H 1.08002 * 120.00420 * 179.78166 * 5 4 3 25 25 H 1.08999 * 109.47047 * 210.00053 * 8 7 6 26 26 H 1.09003 * 109.46585 * 329.98955 * 8 7 6 27 27 H 1.09001 * 109.46908 * 60.00374 * 10 9 8 28 28 H 1.09003 * 109.46807 * 180.02562 * 10 9 8 29 29 H 1.09000 * 109.47379 * 299.99712 * 10 9 8 30 30 H 1.09000 * 109.46857 * 309.99479 * 11 9 8 31 31 H 1.08999 * 109.47756 * 69.99759 * 11 9 8 32 32 H 0.97006 * 119.99874 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4890 1.1445 0.0058 5 6 4.1810 -0.0539 0.0014 6 7 3.5202 -1.1981 0.0015 7 6 2.1987 -1.1981 0.0005 8 6 1.4451 -2.5032 0.0000 9 7 1.1993 -2.9272 1.3848 10 6 2.4590 -3.2513 2.0676 11 6 0.2687 -4.0629 1.4303 12 6 -0.1503 -4.3122 2.8562 13 1 0.2358 -3.6890 3.6494 14 6 -1.0274 -5.3352 3.1483 15 7 -1.4987 -6.0930 2.1823 16 14 -1.5473 -5.6437 4.9157 17 1 -0.8812 -4.6599 5.8065 18 1 -3.0206 -5.4983 5.0309 19 1 -1.1528 -7.0187 5.3148 20 1 -0.3634 0.0004 1.0276 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3633 -0.8902 -0.5135 23 1 4.0290 2.0798 0.0099 24 1 5.2610 -0.0540 0.0026 25 1 0.4931 -2.3728 -0.5145 26 1 2.0346 -3.2628 -0.5135 27 1 3.1021 -2.3713 2.0805 28 1 2.2480 -3.5626 3.0907 29 1 2.9615 -4.0608 1.5382 30 1 -0.6108 -3.8362 0.8276 31 1 0.7605 -4.9518 1.0354 32 1 -2.1155 -6.8130 2.3877 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598671233.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:22 Heat of formation + Delta-G solvation = 50.595732 kcal Electronic energy + Delta-G solvation = -14793.618599 eV Core-core repulsion = 12368.470575 eV Total energy + Delta-G solvation = -2425.148024 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.00850 -36.69882 -34.30957 -33.21696 -32.14613 -28.27625 -27.41377 -26.91043 -24.45055 -22.82436 -22.15778 -20.29570 -17.63565 -16.56235 -16.11919 -15.43724 -15.18065 -14.62541 -14.14578 -13.74519 -13.55414 -12.74676 -12.60960 -12.36375 -12.04982 -11.93076 -11.44669 -11.31062 -11.07545 -10.85718 -10.73521 -10.65007 -10.43754 -9.93066 -9.29209 -8.89410 -8.82527 -8.45622 -7.31926 -6.05052 -4.06179 0.94516 1.30588 3.30193 3.37728 3.42712 3.80166 4.19136 4.32946 4.42873 4.65348 4.90039 5.15002 5.26834 5.31725 5.36413 5.53200 5.75725 5.84769 6.06897 6.09210 6.22161 6.25491 6.40845 6.62204 6.79333 7.20794 7.30056 7.46862 7.75986 7.96912 8.02677 8.14384 8.48723 9.01419 9.58112 11.05882 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046275 B = 0.006446 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.933685 B = 4343.020371 C = 4468.556990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.099 3.901 3 N -0.445 5.445 4 C 0.040 3.960 5 C 0.036 3.964 6 N -0.433 5.433 7 C 0.104 3.896 8 C 0.099 3.901 9 N -0.532 5.532 10 C 0.041 3.959 11 C 0.193 3.807 12 C -0.506 4.506 13 H 0.064 0.936 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.898 3.102 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 H 0.091 0.909 21 H 0.071 0.929 22 H 0.084 0.916 23 H 0.164 0.836 24 H 0.164 0.836 25 H 0.092 0.908 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.015 0.985 30 H 0.032 0.968 31 H -0.006 1.006 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.507 10.997 -5.075 14.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.042 4.042 3 N -0.161 5.161 4 C -0.120 4.120 5 C -0.124 4.124 6 N -0.148 5.148 7 C -0.038 4.038 8 C -0.030 4.030 9 N -0.257 5.257 10 C -0.107 4.107 11 C 0.068 3.932 12 C -0.545 4.545 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 H 0.109 0.891 21 H 0.090 0.910 22 H 0.102 0.898 23 H 0.181 0.819 24 H 0.181 0.819 25 H 0.110 0.890 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.033 0.967 30 H 0.050 0.950 31 H 0.012 0.988 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.163 11.220 -4.859 14.171 hybrid contribution 0.297 -0.869 0.526 1.059 sum 7.460 10.351 -4.333 13.475 Atomic orbital electron populations 1.20752 0.87435 1.03200 1.04360 1.22112 0.98628 0.88666 0.94779 1.68278 1.08845 1.29433 1.09548 1.23631 0.90990 0.99562 0.97856 1.23664 1.01589 0.88998 0.98142 1.68320 1.08636 1.29660 1.08223 1.22191 0.90058 0.96965 0.94567 1.21008 0.98073 0.90475 0.93490 1.62173 1.12566 1.40426 1.10567 1.22197 0.90546 0.97966 1.00039 1.19775 0.90110 0.85215 0.98076 1.21169 1.26278 1.14334 0.92687 0.91812 1.24978 0.96200 0.95930 0.97459 1.69967 1.32438 1.19728 1.31661 0.86442 0.78351 0.77953 0.84690 1.19696 1.20966 1.21107 0.89063 0.90989 0.89771 0.81916 0.81916 0.89003 0.93700 0.93762 0.90841 0.96652 0.94964 0.98838 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 9.79 36.01 0.35 -1.04 16 2 C 0.10 1.57 6.79 -82.41 -0.56 1.01 16 3 N -0.45 -6.70 10.42 -9.29 -0.10 -6.79 16 4 C 0.04 0.49 11.23 -17.37 -0.19 0.29 16 5 C 0.04 0.46 11.23 -17.37 -0.19 0.26 16 6 N -0.43 -7.04 9.39 -9.29 -0.09 -7.13 16 7 C 0.10 1.75 5.53 -82.42 -0.46 1.30 16 8 C 0.10 1.81 4.86 -4.98 -0.02 1.78 16 9 N -0.53 -11.52 4.74 -245.83 -1.17 -12.69 16 10 C 0.04 0.85 9.11 60.07 0.55 1.40 16 11 C 0.19 4.93 4.72 -4.98 -0.02 4.90 16 12 C -0.51 -14.04 8.46 -34.44 -0.29 -14.34 16 13 H 0.06 1.77 7.12 -52.48 -0.37 1.40 16 14 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 16 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 21 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.08 1.13 5.95 -51.93 -0.31 0.82 16 23 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 24 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 25 H 0.09 1.55 5.74 -51.93 -0.30 1.25 16 26 H 0.04 0.84 8.12 -51.93 -0.42 0.41 16 27 H 0.04 0.86 6.57 -51.93 -0.34 0.52 16 28 H 0.07 1.61 6.76 -51.93 -0.35 1.25 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.03 0.85 7.93 -51.93 -0.41 0.44 16 31 H -0.01 -0.17 8.12 -51.93 -0.42 -0.59 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 271.04 15.07 4.08 4.08 Total: -1.00 -31.04 271.04 -6.67 -37.71 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -4.18 Total: -3.11 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -0.94 Total: -2.97 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.61 Total: -52.20 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.04 -6.67 -37.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598671233.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.308 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds