Wall clock time and date at job start Sun Mar 29 2020 22:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32153 * 119.99835 * 2 1 4 4 C 1.32127 * 119.99946 * 179.70825 * 3 2 1 5 5 C 1.38386 * 119.99693 * 0.50169 * 4 3 2 6 6 N 1.32127 * 119.99506 * 359.49319 * 5 4 3 7 7 C 1.32154 * 120.00408 * 0.26639 * 6 5 4 8 8 C 1.50701 * 120.00158 * 179.97438 * 7 6 5 9 9 N 1.46890 * 109.47305 * 89.99307 * 8 7 6 10 10 C 1.46904 * 111.00059 * 293.95351 * 9 8 7 11 11 C 1.46901 * 111.00003 * 170.00361 * 9 8 7 12 12 C 1.50698 * 109.47289 * 189.99957 * 11 9 8 13 13 H 1.08004 * 120.00158 * 0.02562 * 12 11 9 14 14 C 1.37877 * 120.00369 * 179.97438 * 12 11 9 15 15 N 1.31518 * 119.99512 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00278 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46831 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47130 * 120.00022 * 16 14 12 19 19 H 1.48501 * 109.46910 * 240.00221 * 16 14 12 20 20 H 1.08994 * 109.47604 * 270.02331 * 1 2 3 21 21 H 1.09003 * 109.47107 * 30.02470 * 1 2 3 22 22 H 1.08996 * 109.46857 * 150.02109 * 1 2 3 23 23 H 1.07998 * 120.00116 * 180.25018 * 4 3 2 24 24 H 1.08002 * 120.00420 * 179.78166 * 5 4 3 25 25 H 1.08999 * 109.47047 * 210.00053 * 8 7 6 26 26 H 1.09003 * 109.46585 * 329.98955 * 8 7 6 27 27 H 1.09001 * 109.46908 * 60.00374 * 10 9 8 28 28 H 1.09003 * 109.46807 * 180.02562 * 10 9 8 29 29 H 1.09000 * 109.47379 * 299.99712 * 10 9 8 30 30 H 1.09000 * 109.46857 * 309.99479 * 11 9 8 31 31 H 1.08999 * 109.47756 * 69.99759 * 11 9 8 32 32 H 0.97006 * 119.99874 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4890 1.1445 0.0058 5 6 4.1810 -0.0539 0.0014 6 7 3.5202 -1.1981 0.0015 7 6 2.1987 -1.1981 0.0005 8 6 1.4451 -2.5032 0.0000 9 7 1.1993 -2.9272 1.3848 10 6 2.4590 -3.2513 2.0676 11 6 0.2687 -4.0629 1.4303 12 6 -0.1503 -4.3122 2.8562 13 1 0.2358 -3.6890 3.6494 14 6 -1.0274 -5.3352 3.1483 15 7 -1.4987 -6.0930 2.1823 16 14 -1.5473 -5.6437 4.9157 17 1 -0.8812 -4.6599 5.8065 18 1 -3.0206 -5.4983 5.0309 19 1 -1.1528 -7.0187 5.3148 20 1 -0.3634 0.0004 1.0276 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3633 -0.8902 -0.5135 23 1 4.0290 2.0798 0.0099 24 1 5.2610 -0.0540 0.0026 25 1 0.4931 -2.3728 -0.5145 26 1 2.0346 -3.2628 -0.5135 27 1 3.1021 -2.3713 2.0805 28 1 2.2480 -3.5626 3.0907 29 1 2.9615 -4.0608 1.5382 30 1 -0.6108 -3.8362 0.8276 31 1 0.7605 -4.9518 1.0354 32 1 -2.1155 -6.8130 2.3877 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598671233.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:22 Heat of formation + Delta-G solvation = 28.342932 kcal Electronic energy + Delta-G solvation = -14794.583553 eV Core-core repulsion = 12368.470575 eV Total energy + Delta-G solvation = -2426.112978 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.13805 -38.37235 -35.46362 -34.93084 -33.78013 -29.79781 -28.81621 -28.55134 -26.17861 -24.08964 -23.56018 -22.00332 -18.79382 -18.55347 -17.32518 -16.93986 -16.47011 -16.29127 -15.80945 -15.32532 -15.02307 -14.13354 -13.89319 -13.74966 -13.55460 -13.48648 -13.12990 -12.88156 -12.63025 -12.53531 -12.32455 -12.30739 -11.94490 -11.84657 -11.33429 -10.61637 -10.01298 -9.97941 -9.10593 -8.20058 -6.29432 -0.15082 0.18600 1.41907 1.42720 1.55918 2.40549 2.67250 3.10019 3.13136 3.23990 3.52268 3.57110 3.79447 4.13820 4.33727 4.45321 4.51139 4.52540 4.59590 4.70136 4.83704 4.91284 5.02127 5.15485 5.18206 5.25627 5.53661 5.64504 6.01713 6.21057 6.39054 6.53077 6.85285 6.88398 7.39878 8.91220 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046275 B = 0.006446 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.933685 B = 4343.020371 C = 4468.556990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.087 3.913 3 N -0.461 5.461 4 C 0.054 3.946 5 C 0.040 3.960 6 N -0.458 5.458 7 C 0.079 3.921 8 C 0.104 3.896 9 N -0.536 5.536 10 C 0.052 3.948 11 C 0.208 3.792 12 C -0.522 4.522 13 H 0.060 0.940 14 C 0.005 3.995 15 N -0.932 5.932 16 Si 0.968 3.032 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.279 1.279 20 H 0.079 0.921 21 H 0.089 0.911 22 H 0.082 0.918 23 H 0.209 0.791 24 H 0.204 0.796 25 H 0.099 0.901 26 H 0.036 0.964 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.011 0.989 30 H 0.017 0.983 31 H -0.035 1.035 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.621 12.670 -4.504 15.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.052 4.052 3 N -0.177 5.177 4 C -0.107 4.107 5 C -0.121 4.121 6 N -0.174 5.174 7 C -0.061 4.061 8 C -0.025 4.025 9 N -0.260 5.260 10 C -0.097 4.097 11 C 0.082 3.918 12 C -0.560 4.560 13 H 0.078 0.922 14 C -0.194 4.194 15 N -0.573 5.573 16 Si 0.792 3.208 17 H -0.190 1.190 18 H -0.202 1.202 19 H -0.205 1.205 20 H 0.098 0.902 21 H 0.108 0.892 22 H 0.100 0.900 23 H 0.226 0.774 24 H 0.221 0.779 25 H 0.117 0.883 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.029 0.971 30 H 0.035 0.965 31 H -0.017 1.017 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.256 12.892 -4.296 15.900 hybrid contribution 0.099 -1.272 0.278 1.306 sum 8.355 11.620 -4.018 14.865 Atomic orbital electron populations 1.20728 0.86918 1.04005 1.03801 1.22199 0.99234 0.88653 0.95130 1.68358 1.10341 1.28824 1.10180 1.24424 0.90181 1.01342 0.94787 1.24378 1.03387 0.88046 0.96268 1.68252 1.08418 1.31797 1.08888 1.21812 0.90640 0.96201 0.97440 1.20943 0.98840 0.91440 0.91308 1.62059 1.12596 1.38276 1.13067 1.22080 0.90260 0.98438 0.98920 1.19437 0.90133 0.85429 0.96779 1.21440 1.26541 1.14553 0.93508 0.92157 1.25850 0.96087 0.95561 1.01853 1.70080 1.33013 1.20279 1.33899 0.85359 0.78100 0.77951 0.79353 1.19040 1.20210 1.20494 0.90208 0.89220 0.89955 0.77425 0.77893 0.88309 0.94556 0.92196 0.92330 0.97056 0.96524 1.01734 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.67 9.79 71.24 0.70 -1.98 16 2 C 0.09 2.66 6.79 42.54 0.29 2.95 16 3 N -0.46 -12.76 10.42 -183.29 -1.91 -14.67 16 4 C 0.05 1.12 11.23 84.68 0.95 2.07 16 5 C 0.04 0.88 11.23 84.68 0.95 1.83 16 6 N -0.46 -14.14 9.39 -183.30 -1.72 -15.86 16 7 C 0.08 2.62 5.53 42.53 0.24 2.85 16 8 C 0.10 3.87 4.86 85.56 0.42 4.29 16 9 N -0.54 -23.69 4.74 -931.66 -4.42 -28.11 16 10 C 0.05 2.16 9.11 127.69 1.16 3.33 16 11 C 0.21 11.01 4.72 85.56 0.40 11.41 16 12 C -0.52 -29.50 8.46 25.60 0.22 -29.28 16 13 H 0.06 3.38 7.12 -2.91 -0.02 3.36 16 14 C 0.00 0.27 5.46 84.65 0.46 0.73 16 15 N -0.93 -55.48 13.29 21.45 0.28 -55.20 16 16 Si 0.97 44.17 29.54 68.60 2.03 46.19 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 21 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.08 2.24 5.95 -2.39 -0.01 2.23 16 23 H 0.21 2.32 8.06 -2.91 -0.02 2.30 16 24 H 0.20 2.67 8.06 -2.91 -0.02 2.65 16 25 H 0.10 3.46 5.74 -2.39 -0.01 3.44 16 26 H 0.04 1.40 8.12 -2.39 -0.02 1.38 16 27 H 0.06 2.31 6.57 -2.39 -0.02 2.29 16 28 H 0.06 2.59 6.76 -2.39 -0.02 2.58 16 29 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.02 0.92 7.93 -2.39 -0.02 0.90 16 31 H -0.04 -2.02 8.12 -2.39 -0.02 -2.04 16 32 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 Total: -1.00 -67.02 271.04 1.15 -65.86 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 1.11 Total: 3.60 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 5.78 Total: -1.81 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -7.77 Total: -113.85 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -67.02 1.15 -65.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598671233.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.207 kcal (2) G-P(sol) polarization free energy of solvation -67.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds