Wall clock time and date at job start Sun Mar 29 2020 22:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46500 * 109.46956 * 2 1 4 4 C 1.36939 * 120.00193 * 264.17796 * 3 2 1 5 5 H 1.08000 * 120.00185 * 188.48543 * 4 3 2 6 6 C 1.38810 * 119.99981 * 8.48125 * 4 3 2 7 7 N 1.31623 * 120.00202 * 25.33551 * 6 4 3 8 8 Si 1.86806 * 120.00251 * 205.33992 * 6 4 3 9 9 H 1.48494 * 109.47028 * 84.98596 * 8 6 4 10 10 H 1.48500 * 109.46719 * 204.98635 * 8 6 4 11 11 H 1.48501 * 109.46752 * 324.98588 * 8 6 4 12 12 C 1.46501 * 119.99953 * 84.17725 * 3 2 1 13 13 C 1.50692 * 109.47222 * 269.99598 * 12 3 2 14 14 N 1.32157 * 119.99687 * 89.99953 * 13 12 3 15 15 C 1.32122 * 120.00204 * 179.97438 * 14 13 12 16 16 C 1.38387 * 119.99775 * 0.02562 * 15 14 13 17 17 N 1.32125 * 119.99671 * 359.97438 * 16 15 14 18 18 C 1.32156 * 119.99992 * 359.73621 * 17 16 15 19 19 C 1.50703 * 119.99970 * 180.27717 * 18 17 16 20 20 H 1.08993 * 109.47013 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46635 * 299.99842 * 1 2 3 22 22 H 1.08997 * 109.46971 * 59.99555 * 1 2 3 23 23 H 1.09004 * 109.46635 * 240.00158 * 2 1 3 24 24 H 1.08989 * 109.47217 * 120.00206 * 2 1 3 25 25 H 0.97000 * 120.00447 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.47224 * 149.99623 * 12 3 2 27 27 H 1.09004 * 109.47033 * 30.00156 * 12 3 2 28 28 H 1.08007 * 120.00460 * 180.02562 * 15 14 13 29 29 H 1.08000 * 120.00390 * 180.02562 * 16 15 14 30 30 H 1.08998 * 109.46965 * 270.24388 * 19 18 17 31 31 H 1.09006 * 109.46934 * 30.24272 * 19 18 17 32 32 H 1.09002 * 109.46904 * 150.24328 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3600 1.9867 -1.1798 5 1 2.8470 2.9507 -1.1709 6 6 2.0805 1.3615 -2.3872 7 7 1.0963 0.4911 -2.4653 8 14 3.1014 1.7553 -3.9013 9 1 4.3221 0.9099 -3.9088 10 1 2.3018 1.4811 -5.1223 11 1 3.4915 3.1879 -3.8763 12 6 2.1412 2.1147 1.2622 13 6 0.8507 2.8374 1.5508 14 7 -0.1003 2.2391 2.2466 15 6 -1.2315 2.8728 2.5002 16 6 -1.4208 4.1630 2.0366 17 7 -0.4700 4.7610 1.3409 18 6 0.6638 4.1292 1.0923 19 6 1.7507 4.8136 0.3042 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 0.9012 0.0539 -3.3089 26 1 2.9531 2.8379 1.1847 27 1 2.3541 1.4146 2.0701 28 1 -2.0086 2.3841 3.0692 29 1 -2.3453 4.6812 2.2441 30 1 1.6122 4.6108 -0.7578 31 1 1.7035 5.8887 0.4780 32 1 2.7227 4.4364 0.6223 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598671532.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:55 Heat of formation + Delta-G solvation = 76.443898 kcal Electronic energy + Delta-G solvation = -15549.288697 eV Core-core repulsion = 13125.261533 eV Total energy + Delta-G solvation = -2424.027164 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49009 -36.21469 -33.86064 -32.87684 -30.98051 -29.22548 -27.71383 -26.18366 -23.66096 -22.43570 -21.80655 -20.26214 -17.31495 -16.51652 -15.96171 -15.19130 -14.93620 -14.29314 -13.57107 -13.37610 -13.01520 -12.38973 -12.27287 -12.16115 -11.81068 -11.54595 -11.06855 -10.95720 -10.85630 -10.69209 -10.54156 -10.30674 -10.00838 -9.65634 -9.31979 -8.53456 -8.37652 -8.31642 -6.99060 -5.84701 -3.14115 1.41448 1.78937 3.35138 3.42652 3.43647 4.24487 4.47949 4.64629 4.82271 5.14951 5.24162 5.39054 5.56633 5.69209 5.79884 6.02609 6.10253 6.17552 6.49356 6.51394 6.60750 6.67305 6.96966 7.04997 7.19560 7.22864 7.60625 7.78440 7.94859 8.11045 8.27285 8.47747 9.14606 9.75747 10.21562 11.17736 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031627 B = 0.010864 C = 0.009384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.094331 B = 2576.618492 C = 2982.936794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.169 3.831 3 N -0.576 5.576 4 C -0.255 4.255 5 H 0.082 0.918 6 C -0.001 4.001 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.287 1.287 10 H -0.293 1.293 11 H -0.279 1.279 12 C 0.189 3.811 13 C 0.082 3.918 14 N -0.432 5.432 15 C 0.034 3.966 16 C 0.021 3.979 17 N -0.449 5.449 18 C 0.089 3.911 19 C -0.097 4.097 20 H 0.015 0.985 21 H 0.033 0.967 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.007 0.993 25 H 0.253 0.747 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.808 4.303 7.171 8.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.044 3.956 3 N -0.295 5.295 4 C -0.384 4.384 5 H 0.100 0.900 6 C -0.199 4.199 7 N -0.532 5.532 8 Si 0.729 3.271 9 H -0.214 1.214 10 H -0.220 1.220 11 H -0.205 1.205 12 C 0.060 3.940 13 C -0.062 4.062 14 N -0.147 5.147 15 C -0.126 4.126 16 C -0.139 4.139 17 N -0.164 5.164 18 C -0.054 4.054 19 C -0.154 4.154 20 H 0.034 0.966 21 H 0.052 0.948 22 H 0.100 0.900 23 H 0.104 0.896 24 H 0.025 0.975 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.173 0.827 29 H 0.172 0.828 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.828 4.156 6.984 8.169 hybrid contribution -0.198 0.136 -0.913 0.944 sum -1.026 4.292 6.070 7.505 Atomic orbital electron populations 1.22378 0.99200 0.98261 1.01907 1.20856 0.92717 0.83815 0.98213 1.44591 1.73969 1.09671 1.01291 1.19441 1.31191 1.04429 0.83342 0.90042 1.24817 0.97619 0.99927 0.97542 1.70205 1.26483 1.31416 1.25074 0.86338 0.80297 0.78033 0.82414 1.21377 1.21978 1.20490 1.19986 0.89473 0.94454 0.90038 1.23736 0.99721 0.91445 0.91324 1.68303 1.00510 1.34864 1.11059 1.23556 0.96134 0.93601 0.99339 1.23398 0.98773 0.94583 0.97123 1.68142 1.00638 1.37006 1.10662 1.21995 0.93856 0.92975 0.96536 1.20775 0.95068 0.99072 1.00520 0.96555 0.94801 0.89975 0.89583 0.97483 0.93632 0.91113 0.92226 0.82741 0.82758 0.89107 0.91807 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 9.58 37.16 0.36 -3.50 16 2 C 0.17 4.10 5.64 -4.04 -0.02 4.08 16 3 N -0.58 -13.79 2.52 -174.61 -0.44 -14.23 16 4 C -0.26 -6.47 9.06 -15.06 -0.14 -6.61 16 5 H 0.08 1.96 6.33 -52.49 -0.33 1.62 16 6 C 0.00 -0.02 4.89 -17.43 -0.09 -0.10 16 7 N -0.89 -24.51 8.59 55.49 0.48 -24.03 16 8 Si 0.90 20.89 29.62 -169.99 -5.04 15.86 16 9 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 C 0.19 3.85 5.62 -5.20 -0.03 3.82 16 13 C 0.08 1.67 5.97 -82.42 -0.49 1.18 16 14 N -0.43 -8.57 8.34 -9.29 -0.08 -8.64 16 15 C 0.03 0.56 11.23 -17.37 -0.20 0.37 16 16 C 0.02 0.35 11.23 -17.37 -0.19 0.15 16 17 N -0.45 -8.54 10.42 -9.29 -0.10 -8.64 16 18 C 0.09 1.74 6.78 -82.41 -0.56 1.18 16 19 C -0.10 -1.67 8.63 36.01 0.31 -1.36 16 20 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 21 H 0.03 0.79 5.62 -51.93 -0.29 0.50 16 22 H 0.08 2.27 6.29 -51.93 -0.33 1.95 16 23 H 0.09 2.29 5.88 -51.93 -0.31 1.99 16 24 H 0.01 0.16 7.98 -51.94 -0.41 -0.26 16 25 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 26 H 0.07 1.30 5.83 -51.93 -0.30 0.99 16 27 H 0.06 1.16 7.95 -51.93 -0.41 0.74 16 28 H 0.16 2.01 8.06 -52.48 -0.42 1.59 16 29 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 30 H 0.09 1.74 7.21 -51.93 -0.37 1.36 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.26 5.86 -51.93 -0.30 0.96 16 LS Contribution 259.10 15.07 3.90 3.90 Total: -1.00 -29.23 259.10 -6.21 -35.43 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -3.89 Total: 1.14 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -1.05 Total: -0.78 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.14 Total: -55.55 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.04 Total: 15.86 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.23 -6.21 -35.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598671532.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.879 kcal (2) G-P(sol) polarization free energy of solvation -29.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds