Wall clock time and date at job start Sun Mar 29 2020 22:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46500 * 109.46956 * 2 1 4 4 C 1.36939 * 120.00193 * 264.17796 * 3 2 1 5 5 H 1.08000 * 120.00185 * 188.48543 * 4 3 2 6 6 C 1.38810 * 119.99981 * 8.48125 * 4 3 2 7 7 N 1.31623 * 120.00202 * 25.33551 * 6 4 3 8 8 Si 1.86806 * 120.00251 * 205.33992 * 6 4 3 9 9 H 1.48494 * 109.47028 * 84.98596 * 8 6 4 10 10 H 1.48500 * 109.46719 * 204.98635 * 8 6 4 11 11 H 1.48501 * 109.46752 * 324.98588 * 8 6 4 12 12 C 1.46501 * 119.99953 * 84.17725 * 3 2 1 13 13 C 1.50692 * 109.47222 * 269.99598 * 12 3 2 14 14 N 1.32157 * 119.99687 * 89.99953 * 13 12 3 15 15 C 1.32122 * 120.00204 * 179.97438 * 14 13 12 16 16 C 1.38387 * 119.99775 * 0.02562 * 15 14 13 17 17 N 1.32125 * 119.99671 * 359.97438 * 16 15 14 18 18 C 1.32156 * 119.99992 * 359.73621 * 17 16 15 19 19 C 1.50703 * 119.99970 * 180.27717 * 18 17 16 20 20 H 1.08993 * 109.47013 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46635 * 299.99842 * 1 2 3 22 22 H 1.08997 * 109.46971 * 59.99555 * 1 2 3 23 23 H 1.09004 * 109.46635 * 240.00158 * 2 1 3 24 24 H 1.08989 * 109.47217 * 120.00206 * 2 1 3 25 25 H 0.97000 * 120.00447 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.47224 * 149.99623 * 12 3 2 27 27 H 1.09004 * 109.47033 * 30.00156 * 12 3 2 28 28 H 1.08007 * 120.00460 * 180.02562 * 15 14 13 29 29 H 1.08000 * 120.00390 * 180.02562 * 16 15 14 30 30 H 1.08998 * 109.46965 * 270.24388 * 19 18 17 31 31 H 1.09006 * 109.46934 * 30.24272 * 19 18 17 32 32 H 1.09002 * 109.46904 * 150.24328 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3600 1.9867 -1.1798 5 1 2.8470 2.9507 -1.1709 6 6 2.0805 1.3615 -2.3872 7 7 1.0963 0.4911 -2.4653 8 14 3.1014 1.7553 -3.9013 9 1 4.3221 0.9099 -3.9088 10 1 2.3018 1.4811 -5.1223 11 1 3.4915 3.1879 -3.8763 12 6 2.1412 2.1147 1.2622 13 6 0.8507 2.8374 1.5508 14 7 -0.1003 2.2391 2.2466 15 6 -1.2315 2.8728 2.5002 16 6 -1.4208 4.1630 2.0366 17 7 -0.4700 4.7610 1.3409 18 6 0.6638 4.1292 1.0923 19 6 1.7507 4.8136 0.3042 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 0.9012 0.0539 -3.3089 26 1 2.9531 2.8379 1.1847 27 1 2.3541 1.4146 2.0701 28 1 -2.0086 2.3841 3.0692 29 1 -2.3453 4.6812 2.2441 30 1 1.6122 4.6108 -0.7578 31 1 1.7035 5.8887 0.4780 32 1 2.7227 4.4364 0.6223 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598671532.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:54 Heat of formation + Delta-G solvation = 58.366305 kcal Electronic energy + Delta-G solvation = -15550.072600 eV Core-core repulsion = 13125.261533 eV Total energy + Delta-G solvation = -2424.811067 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.91770 -37.99277 -35.30115 -34.46159 -32.80668 -31.04923 -29.16996 -27.79747 -25.47724 -23.94266 -23.36132 -22.07634 -18.92677 -18.23640 -17.41809 -16.87494 -16.35407 -15.91740 -15.37953 -15.12326 -14.53054 -13.94052 -13.88331 -13.67307 -13.46597 -13.29319 -12.75055 -12.69358 -12.47824 -12.41699 -12.27501 -11.93525 -11.83704 -11.45593 -11.22493 -10.36992 -9.88144 -9.79111 -8.87230 -7.79427 -5.11006 0.02673 0.35603 1.50670 1.54583 1.59679 2.54300 2.87464 3.27314 3.37180 3.46025 3.77135 3.79301 4.05493 4.30916 4.49411 4.64905 4.69269 4.74277 4.79109 4.99817 5.02441 5.08876 5.18897 5.27108 5.28285 5.65599 5.68469 5.82146 6.10984 6.34170 6.53872 7.05319 7.20167 7.89041 8.31971 9.22601 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031627 B = 0.010864 C = 0.009384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.094331 B = 2576.618492 C = 2982.936794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.173 3.827 3 N -0.591 5.591 4 C -0.250 4.250 5 H 0.093 0.907 6 C -0.054 4.054 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.289 1.289 10 H -0.307 1.307 11 H -0.267 1.267 12 C 0.190 3.810 13 C 0.062 3.938 14 N -0.453 5.453 15 C 0.031 3.969 16 C 0.032 3.968 17 N -0.467 5.467 18 C 0.071 3.929 19 C -0.091 4.091 20 H 0.023 0.977 21 H 0.040 0.960 22 H 0.046 0.954 23 H 0.059 0.941 24 H 0.023 0.977 25 H 0.243 0.757 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.195 0.805 29 H 0.199 0.801 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.217 5.516 8.592 10.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.048 3.952 3 N -0.311 5.311 4 C -0.380 4.380 5 H 0.110 0.890 6 C -0.249 4.249 7 N -0.566 5.566 8 Si 0.784 3.216 9 H -0.216 1.216 10 H -0.234 1.234 11 H -0.192 1.192 12 C 0.062 3.938 13 C -0.081 4.081 14 N -0.169 5.169 15 C -0.129 4.129 16 C -0.128 4.128 17 N -0.183 5.183 18 C -0.069 4.069 19 C -0.149 4.149 20 H 0.042 0.958 21 H 0.059 0.941 22 H 0.065 0.935 23 H 0.077 0.923 24 H 0.041 0.959 25 H 0.053 0.947 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.212 0.788 29 H 0.215 0.785 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.201 5.408 8.430 10.087 hybrid contribution -0.200 -0.150 -1.134 1.161 sum -1.401 5.258 7.295 9.101 Atomic orbital electron populations 1.22175 0.99304 0.98254 1.00293 1.20687 0.92560 0.84461 0.97508 1.44594 1.74585 1.09927 1.02018 1.19757 1.30104 1.04252 0.83842 0.88972 1.25436 0.98725 1.00835 0.99888 1.70368 1.28100 1.33306 1.24814 0.85460 0.78572 0.78248 0.79330 1.21637 1.23422 1.19206 1.20050 0.90304 0.94831 0.88603 1.23557 0.99518 0.92201 0.92776 1.68260 1.01504 1.35721 1.11399 1.24252 0.95906 0.93880 0.98841 1.24178 0.99327 0.94577 0.94754 1.68224 1.01029 1.37542 1.11526 1.22264 0.94732 0.93124 0.96772 1.20739 0.95087 1.00260 0.98794 0.95759 0.94147 0.93480 0.92319 0.95923 0.94732 0.89355 0.91553 0.78844 0.78452 0.91240 0.89886 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.86 9.58 71.99 0.69 -6.17 16 2 C 0.17 8.44 5.64 86.38 0.49 8.93 16 3 N -0.59 -28.05 2.52 -706.34 -1.78 -29.84 16 4 C -0.25 -12.64 9.06 84.03 0.76 -11.87 16 5 H 0.09 4.35 6.33 -2.91 -0.02 4.33 16 6 C -0.05 -2.88 4.89 84.86 0.41 -2.46 16 7 N -0.92 -52.15 8.59 21.65 0.19 -51.96 16 8 Si 0.95 43.55 29.62 68.60 2.03 45.59 16 9 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 10 H -0.31 -14.54 7.11 99.48 0.71 -13.83 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 C 0.19 7.47 5.62 85.63 0.48 7.95 16 13 C 0.06 2.44 5.97 42.53 0.25 2.69 16 14 N -0.45 -16.99 8.34 -183.30 -1.53 -18.52 16 15 C 0.03 0.95 11.23 84.68 0.95 1.90 16 16 C 0.03 0.94 11.23 84.68 0.95 1.89 16 17 N -0.47 -16.61 10.42 -183.30 -1.91 -18.52 16 18 C 0.07 2.68 6.78 42.53 0.29 2.97 16 19 C -0.09 -3.02 8.63 71.24 0.62 -2.40 16 20 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 21 H 0.04 1.86 5.62 -2.38 -0.01 1.85 16 22 H 0.05 2.64 6.29 -2.39 -0.02 2.62 16 23 H 0.06 3.20 5.88 -2.38 -0.01 3.18 16 24 H 0.02 1.01 7.98 -2.39 -0.02 0.99 16 25 H 0.24 13.69 8.31 -92.71 -0.77 12.91 16 26 H 0.09 3.09 5.83 -2.39 -0.01 3.08 16 27 H 0.07 2.48 7.95 -2.39 -0.02 2.46 16 28 H 0.19 4.15 8.06 -2.91 -0.02 4.12 16 29 H 0.20 3.91 8.06 -2.91 -0.02 3.89 16 30 H 0.07 2.61 7.21 -2.39 -0.02 2.59 16 31 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.09 2.71 5.86 -2.39 -0.01 2.70 16 Total: -1.00 -62.80 259.10 4.01 -58.79 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 1.12 Total: 11.06 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 5.89 Total: 3.41 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -5.04 Total: -118.84 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.59 kcal Total: -62.80 4.01 -58.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598671532.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.154 kcal (2) G-P(sol) polarization free energy of solvation -62.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds