Wall clock time and date at job start Sun Mar 29 2020 22:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32154 * 119.99701 * 2 1 4 4 C 1.32128 * 120.00015 * 179.97438 * 3 2 1 5 5 C 1.38387 * 119.99334 * 359.97438 * 4 3 2 6 6 N 1.32124 * 120.00199 * 0.02562 * 5 4 3 7 7 C 1.32154 * 119.99831 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99766 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.46871 * 90.00287 * 8 7 6 10 10 C 1.46899 * 111.00220 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47075 * 35.00088 * 10 9 8 12 12 C 1.52997 * 109.47160 * 274.99964 * 10 9 8 13 13 C 1.50706 * 109.47086 * 154.99974 * 10 9 8 14 14 H 1.07991 * 119.99859 * 0.02562 * 13 10 9 15 15 C 1.37880 * 119.99706 * 179.97438 * 13 10 9 16 16 N 1.31518 * 120.00035 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 120.00062 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47424 * 89.99792 * 17 15 13 19 19 H 1.48502 * 109.47384 * 210.00281 * 17 15 13 20 20 H 1.48509 * 109.46972 * 330.00005 * 17 15 13 21 21 H 1.09000 * 109.47232 * 270.02233 * 1 2 3 22 22 H 1.09001 * 109.47224 * 30.01991 * 1 2 3 23 23 H 1.09001 * 109.47279 * 150.01724 * 1 2 3 24 24 H 1.08001 * 120.00278 * 180.02562 * 4 3 2 25 25 H 1.08009 * 119.99684 * 180.29893 * 5 4 3 26 26 H 1.08999 * 109.47522 * 209.99822 * 8 7 6 27 27 H 1.09005 * 109.47476 * 330.00757 * 8 7 6 28 28 H 1.00903 * 111.00015 * 303.95262 * 9 8 7 29 29 H 1.08998 * 109.47228 * 300.00031 * 12 10 9 30 30 H 1.09009 * 109.47068 * 59.99832 * 12 10 9 31 31 H 1.08996 * 109.47364 * 179.97438 * 12 10 9 32 32 H 0.97003 * 120.00154 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1445 0.0000 4 6 3.4890 1.1446 0.0005 5 6 4.1809 -0.0539 0.0016 6 7 3.5202 -1.1981 0.0016 7 6 2.1987 -1.1980 0.0000 8 6 1.4452 -2.5031 -0.0005 9 7 1.1987 -2.9268 1.3843 10 6 0.4649 -4.1988 1.4230 11 1 0.7839 -4.8277 0.5919 12 6 -1.0361 -3.9254 1.3089 13 6 0.7497 -4.9035 2.7244 14 1 1.4093 -4.4515 3.4501 15 6 0.1671 -6.1249 2.9887 16 7 -0.6367 -6.6751 2.1050 17 14 0.5194 -6.9982 4.6019 18 1 -0.4791 -6.5812 5.6189 19 1 0.4352 -8.4668 4.3986 20 1 1.8824 -6.6408 5.0709 21 1 -0.3634 0.0004 1.0277 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3634 -0.8901 -0.5136 24 1 4.0290 2.0799 0.0009 25 1 5.2609 -0.0539 0.0069 26 1 0.4933 -2.3729 -0.5155 27 1 2.0349 -3.2630 -0.5134 28 1 2.0625 -2.9921 1.9016 29 1 -1.3551 -3.2965 2.1401 30 1 -1.2420 -3.4156 0.3677 31 1 -1.5805 -4.8692 1.3372 32 1 -1.0468 -7.5343 2.2911 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598675388.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:37 Heat of formation + Delta-G solvation = 42.129338 kcal Electronic energy + Delta-G solvation = -14684.459210 eV Core-core repulsion = 12258.944055 eV Total energy + Delta-G solvation = -2425.515155 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.99339 -36.19249 -34.34572 -33.51724 -31.82987 -28.90960 -27.74120 -25.79121 -24.93799 -22.81363 -21.96052 -19.81940 -17.67688 -16.84304 -16.11110 -15.31158 -15.08699 -14.72262 -14.07952 -13.46693 -13.27698 -12.82536 -12.64986 -12.47791 -12.16987 -11.55543 -11.34969 -11.18798 -10.89067 -10.85579 -10.71591 -10.35896 -10.16194 -10.04974 -8.96327 -8.91454 -8.77516 -8.48828 -7.36916 -6.04785 -4.11079 0.92361 1.28897 3.29442 3.35758 3.39199 3.79870 4.17331 4.31888 4.40351 4.63557 4.89120 5.24495 5.26498 5.35712 5.45104 5.55216 5.75688 5.85257 6.11054 6.13506 6.24066 6.60843 6.82515 7.08871 7.16679 7.43066 7.45040 7.75364 7.84919 7.96594 8.22655 8.30991 8.58887 8.97792 9.54831 11.01559 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044616 B = 0.006381 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.424492 B = 4386.916395 C = 4719.239122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.098 3.902 3 N -0.446 5.446 4 C 0.040 3.960 5 C 0.038 3.962 6 N -0.435 5.435 7 C 0.098 3.902 8 C 0.106 3.894 9 N -0.679 5.679 10 C 0.212 3.788 11 H 0.004 0.996 12 C -0.125 4.125 13 C -0.518 4.518 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.890 5.890 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.275 1.275 21 H 0.089 0.911 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.164 0.836 25 H 0.165 0.835 26 H 0.088 0.912 27 H 0.042 0.958 28 H 0.335 0.665 29 H 0.032 0.968 30 H 0.005 0.995 31 H 0.081 0.919 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.795 11.688 -5.025 13.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.043 4.043 3 N -0.161 5.161 4 C -0.120 4.120 5 C -0.122 4.122 6 N -0.150 5.150 7 C -0.043 4.043 8 C -0.024 4.024 9 N -0.311 5.311 10 C 0.105 3.895 11 H 0.022 0.978 12 C -0.183 4.183 13 C -0.557 4.557 14 H 0.078 0.922 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.200 1.200 21 H 0.108 0.892 22 H 0.090 0.910 23 H 0.103 0.897 24 H 0.181 0.819 25 H 0.182 0.818 26 H 0.106 0.894 27 H 0.060 0.940 28 H 0.152 0.848 29 H 0.052 0.948 30 H 0.024 0.976 31 H 0.100 0.900 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.110 11.881 -4.989 13.526 hybrid contribution 1.087 -1.041 0.640 1.635 sum 5.197 10.841 -4.349 12.785 Atomic orbital electron populations 1.20743 0.87497 1.03204 1.04206 1.22113 0.98598 0.88700 0.94869 1.68276 1.08865 1.29449 1.09532 1.23645 0.90978 0.99590 0.97832 1.23680 1.01650 0.88948 0.97926 1.68308 1.08640 1.29757 1.08252 1.22304 0.90090 0.97171 0.94771 1.20865 0.97510 0.89778 0.94283 1.60845 1.25785 1.36078 1.08383 1.19150 0.90862 0.83070 0.96445 0.97846 1.21730 0.98847 1.01342 0.96389 1.21232 1.28417 1.03485 1.02555 0.92240 1.24903 0.94961 0.97108 0.96953 1.69891 1.30750 1.17624 1.34576 0.86510 0.78710 0.78594 0.83653 1.20600 1.21243 1.19958 0.89225 0.91023 0.89746 0.81854 0.81831 0.89422 0.93992 0.84812 0.94834 0.97621 0.89993 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 9.79 36.01 0.35 -0.98 16 2 C 0.10 1.53 6.78 -82.42 -0.56 0.97 16 3 N -0.45 -6.62 10.42 -9.29 -0.10 -6.72 16 4 C 0.04 0.48 11.23 -17.37 -0.19 0.29 16 5 C 0.04 0.48 11.23 -17.37 -0.19 0.29 16 6 N -0.43 -7.15 10.42 -9.29 -0.10 -7.25 16 7 C 0.10 1.65 6.30 -82.42 -0.52 1.13 16 8 C 0.11 1.94 5.38 -4.98 -0.03 1.91 16 9 N -0.68 -14.46 6.29 -109.22 -0.69 -15.15 16 10 C 0.21 5.28 2.60 -68.86 -0.18 5.10 16 11 H 0.00 0.11 7.80 -51.93 -0.40 -0.30 16 12 C -0.12 -2.99 9.19 37.16 0.34 -2.65 16 13 C -0.52 -14.16 8.59 -34.44 -0.30 -14.46 16 14 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 15 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 16 N -0.89 -25.15 11.32 55.43 0.63 -24.52 16 17 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 22 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.08 1.11 5.95 -51.93 -0.31 0.80 16 24 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 25 H 0.16 1.49 8.06 -52.48 -0.42 1.07 16 26 H 0.09 1.50 5.25 -51.93 -0.27 1.22 16 27 H 0.04 0.80 8.05 -51.93 -0.42 0.39 16 28 H 0.33 7.36 8.21 -39.29 -0.32 7.04 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.00 0.10 7.45 -51.92 -0.39 -0.28 16 31 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 270.96 15.07 4.08 4.08 Total: -1.00 -29.79 270.96 -6.64 -36.43 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -4.08 Total: 3.67 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -1.37 Total: -6.77 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.25 Total: -53.64 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.79 -6.64 -36.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598675388.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.563 kcal (2) G-P(sol) polarization free energy of solvation -29.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds