Wall clock time and date at job start Sun Mar 29 2020 22:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32154 * 119.99701 * 2 1 4 4 C 1.32128 * 120.00015 * 179.97438 * 3 2 1 5 5 C 1.38387 * 119.99334 * 359.97438 * 4 3 2 6 6 N 1.32124 * 120.00199 * 0.02562 * 5 4 3 7 7 C 1.32154 * 119.99831 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99766 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.46871 * 90.00287 * 8 7 6 10 10 C 1.46899 * 111.00220 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47075 * 35.00088 * 10 9 8 12 12 C 1.52997 * 109.47160 * 274.99964 * 10 9 8 13 13 C 1.50706 * 109.47086 * 154.99974 * 10 9 8 14 14 H 1.07991 * 119.99859 * 0.02562 * 13 10 9 15 15 C 1.37880 * 119.99706 * 179.97438 * 13 10 9 16 16 N 1.31518 * 120.00035 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 120.00062 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47424 * 89.99792 * 17 15 13 19 19 H 1.48502 * 109.47384 * 210.00281 * 17 15 13 20 20 H 1.48509 * 109.46972 * 330.00005 * 17 15 13 21 21 H 1.09000 * 109.47232 * 270.02233 * 1 2 3 22 22 H 1.09001 * 109.47224 * 30.01991 * 1 2 3 23 23 H 1.09001 * 109.47279 * 150.01724 * 1 2 3 24 24 H 1.08001 * 120.00278 * 180.02562 * 4 3 2 25 25 H 1.08009 * 119.99684 * 180.29893 * 5 4 3 26 26 H 1.08999 * 109.47522 * 209.99822 * 8 7 6 27 27 H 1.09005 * 109.47476 * 330.00757 * 8 7 6 28 28 H 1.00903 * 111.00015 * 303.95262 * 9 8 7 29 29 H 1.08998 * 109.47228 * 300.00031 * 12 10 9 30 30 H 1.09009 * 109.47068 * 59.99832 * 12 10 9 31 31 H 1.08996 * 109.47364 * 179.97438 * 12 10 9 32 32 H 0.97003 * 120.00154 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1445 0.0000 4 6 3.4890 1.1446 0.0005 5 6 4.1809 -0.0539 0.0016 6 7 3.5202 -1.1981 0.0016 7 6 2.1987 -1.1980 0.0000 8 6 1.4452 -2.5031 -0.0005 9 7 1.1987 -2.9268 1.3843 10 6 0.4649 -4.1988 1.4230 11 1 0.7839 -4.8277 0.5919 12 6 -1.0361 -3.9254 1.3089 13 6 0.7497 -4.9035 2.7244 14 1 1.4093 -4.4515 3.4501 15 6 0.1671 -6.1249 2.9887 16 7 -0.6367 -6.6751 2.1050 17 14 0.5194 -6.9982 4.6019 18 1 -0.4791 -6.5812 5.6189 19 1 0.4352 -8.4668 4.3986 20 1 1.8824 -6.6408 5.0709 21 1 -0.3634 0.0004 1.0277 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3634 -0.8901 -0.5136 24 1 4.0290 2.0799 0.0009 25 1 5.2609 -0.0539 0.0069 26 1 0.4933 -2.3729 -0.5155 27 1 2.0349 -3.2630 -0.5134 28 1 2.0625 -2.9921 1.9016 29 1 -1.3551 -3.2965 2.1401 30 1 -1.2420 -3.4156 0.3677 31 1 -1.5805 -4.8692 1.3372 32 1 -1.0468 -7.5343 2.2911 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598675388.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:36 Heat of formation + Delta-G solvation = 20.638419 kcal Electronic energy + Delta-G solvation = -14685.391126 eV Core-core repulsion = 12258.944055 eV Total energy + Delta-G solvation = -2426.447071 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.10908 -37.90914 -35.51756 -35.10282 -33.48752 -30.58994 -28.88525 -27.53292 -26.71315 -23.97638 -23.23559 -21.73882 -18.86926 -18.65864 -17.32213 -16.90759 -16.39245 -16.19804 -15.72729 -15.13725 -14.78771 -14.22140 -13.95411 -13.65662 -13.56543 -13.24187 -12.91483 -12.71249 -12.59797 -12.44381 -12.26683 -12.15739 -12.01398 -11.86980 -10.91595 -10.58186 -10.01897 -9.98548 -9.14210 -8.13914 -6.27784 -0.16452 0.17470 1.42171 1.42833 1.52944 2.40893 2.69240 3.10984 3.14860 3.24435 3.56218 3.74706 3.85254 4.15416 4.36943 4.48602 4.55561 4.64141 4.84251 4.85939 4.92803 5.10456 5.16358 5.21675 5.47130 5.53515 5.65118 5.85749 6.22828 6.32724 6.41759 6.67658 6.86926 6.92734 7.42136 8.91558 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044616 B = 0.006381 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.424492 B = 4386.916395 C = 4719.239122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.088 3.912 3 N -0.461 5.461 4 C 0.054 3.946 5 C 0.039 3.961 6 N -0.464 5.464 7 C 0.072 3.928 8 C 0.113 3.887 9 N -0.672 5.672 10 C 0.216 3.784 11 H -0.027 1.027 12 C -0.112 4.112 13 C -0.540 4.540 14 H 0.055 0.945 15 C 0.016 3.984 16 N -0.915 5.915 17 Si 0.961 3.039 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.271 1.271 21 H 0.082 0.918 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.210 0.790 25 H 0.203 0.797 26 H 0.097 0.903 27 H 0.026 0.974 28 H 0.329 0.671 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.057 0.943 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.805 13.252 -4.721 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.051 4.051 3 N -0.177 5.177 4 C -0.107 4.107 5 C -0.121 4.121 6 N -0.179 5.179 7 C -0.067 4.067 8 C -0.017 4.017 9 N -0.302 5.302 10 C 0.108 3.892 11 H -0.010 1.010 12 C -0.171 4.171 13 C -0.578 4.578 14 H 0.073 0.927 15 C -0.183 4.183 16 N -0.554 5.554 17 Si 0.787 3.213 18 H -0.200 1.200 19 H -0.207 1.207 20 H -0.196 1.196 21 H 0.101 0.899 22 H 0.107 0.893 23 H 0.102 0.898 24 H 0.227 0.773 25 H 0.220 0.780 26 H 0.115 0.885 27 H 0.044 0.956 28 H 0.145 0.855 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.090 13.445 -4.694 15.123 hybrid contribution 0.901 -1.410 0.488 1.743 sum 5.991 12.035 -4.206 14.086 Atomic orbital electron populations 1.20740 0.86654 1.04030 1.03939 1.22245 0.99366 0.88539 0.94943 1.68368 1.10261 1.28855 1.10167 1.24429 0.90243 1.01269 0.94747 1.24370 1.03398 0.88071 0.96304 1.68235 1.08680 1.31997 1.09017 1.21952 0.90576 0.96562 0.97646 1.20770 0.98180 0.90549 0.92191 1.60755 1.25294 1.33728 1.10458 1.18967 0.91816 0.84006 0.94407 1.00988 1.21535 0.97771 1.00175 0.97609 1.21545 1.28599 1.04238 1.03418 0.92714 1.25680 0.94729 0.97786 1.00152 1.70011 1.31305 1.17922 1.36154 0.85511 0.78625 0.77472 0.79724 1.19987 1.20740 1.19581 0.89920 0.89269 0.89849 0.77346 0.78003 0.88498 0.95567 0.85499 0.95081 0.95090 0.92441 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.51 9.79 71.24 0.70 -1.81 16 2 C 0.09 2.65 6.78 42.53 0.29 2.94 16 3 N -0.46 -12.59 10.42 -183.30 -1.91 -14.50 16 4 C 0.05 1.13 11.23 84.68 0.95 2.08 16 5 C 0.04 0.89 11.23 84.68 0.95 1.84 16 6 N -0.46 -14.76 10.42 -183.30 -1.91 -16.67 16 7 C 0.07 2.41 6.30 42.53 0.27 2.68 16 8 C 0.11 4.21 5.38 85.56 0.46 4.67 16 9 N -0.67 -29.11 6.29 -499.46 -3.14 -32.25 16 10 C 0.22 11.02 2.60 44.17 0.11 11.13 16 11 H -0.03 -1.54 7.80 -2.39 -0.02 -1.56 16 12 C -0.11 -5.45 9.19 71.98 0.66 -4.79 16 13 C -0.54 -29.95 8.59 25.60 0.22 -29.73 16 14 H 0.05 3.02 7.62 -2.92 -0.02 2.99 16 15 C 0.02 0.89 5.30 84.65 0.45 1.34 16 16 N -0.91 -52.42 11.32 21.45 0.24 -52.18 16 17 Si 0.96 43.69 29.54 68.60 2.03 45.72 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 22 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.08 2.14 5.95 -2.39 -0.01 2.13 16 24 H 0.21 2.34 8.06 -2.91 -0.02 2.31 16 25 H 0.20 2.84 8.06 -2.91 -0.02 2.81 16 26 H 0.10 3.34 5.25 -2.39 -0.01 3.33 16 27 H 0.03 1.04 8.05 -2.38 -0.02 1.02 16 28 H 0.33 14.77 8.21 -89.69 -0.74 14.04 16 29 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.03 1.29 7.45 -2.38 -0.02 1.27 16 31 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 32 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -64.35 270.96 0.76 -63.60 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.39 Total: 15.94 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 5.06 Total: -9.66 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -6.72 Total: -115.60 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -64.35 0.76 -63.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598675388.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.234 kcal (2) G-P(sol) polarization free energy of solvation -64.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds