Wall clock time and date at job start Sun Mar 29 2020 22:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32158 * 119.99879 * 2 1 4 4 C 1.32116 * 120.00140 * 180.27400 * 3 2 1 5 5 C 1.38392 * 119.99720 * 359.73913 * 4 3 2 6 6 N 1.32120 * 119.99672 * 359.97438 * 5 4 3 7 7 C 1.32152 * 120.00197 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99970 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.46771 * 89.99903 * 8 7 6 10 10 C 1.46906 * 110.99715 * 179.97438 * 9 8 7 11 11 H 1.08992 * 109.47459 * 324.99946 * 10 9 8 12 12 C 1.52997 * 109.46907 * 85.00213 * 10 9 8 13 13 C 1.50703 * 109.47109 * 205.00027 * 10 9 8 14 14 H 1.08005 * 119.99876 * 0.02562 * 13 10 9 15 15 C 1.37875 * 119.99989 * 180.02562 * 13 10 9 16 16 N 1.31518 * 119.99944 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47418 * 89.99710 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99770 * 17 15 13 20 20 H 1.48498 * 109.46997 * 329.99580 * 17 15 13 21 21 H 1.08995 * 109.47337 * 270.23896 * 1 2 3 22 22 H 1.08996 * 109.47459 * 30.24615 * 1 2 3 23 23 H 1.09001 * 109.47038 * 150.24437 * 1 2 3 24 24 H 1.08009 * 120.00430 * 179.75582 * 4 3 2 25 25 H 1.08004 * 119.99907 * 179.97438 * 5 4 3 26 26 H 1.08994 * 109.46873 * 330.00414 * 8 7 6 27 27 H 1.09001 * 109.46926 * 209.99728 * 8 7 6 28 28 H 1.00903 * 111.00454 * 303.95384 * 9 8 7 29 29 H 1.09002 * 109.47045 * 179.97438 * 12 10 9 30 30 H 1.09000 * 109.47140 * 299.99770 * 12 10 9 31 31 H 1.09001 * 109.47375 * 59.99788 * 12 10 9 32 32 H 0.96997 * 119.99752 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1445 0.0000 4 6 3.4889 1.1446 -0.0055 5 6 4.1809 -0.0539 -0.0057 6 7 3.5202 -1.1981 0.0000 7 6 2.1987 -1.1980 0.0054 8 6 1.4452 -2.5031 0.0114 9 7 1.2061 -2.9241 1.3983 10 6 0.4715 -4.1955 1.4433 11 1 -0.2353 -4.2363 0.6147 12 6 1.4585 -5.3590 1.3295 13 6 -0.2769 -4.2974 2.7474 14 1 -0.2135 -3.4974 3.4703 15 6 -1.0425 -5.4117 3.0177 16 7 -1.1201 -6.3856 2.1372 17 14 -1.9707 -5.5376 4.6338 18 1 -3.3258 -4.9517 4.4734 19 1 -2.0917 -6.9650 5.0252 20 1 -1.2324 -4.7963 5.6877 21 1 -0.3634 0.0043 1.0276 22 1 -0.3634 0.8877 -0.5176 23 1 -0.3633 -0.8922 -0.5100 24 1 4.0289 2.0800 -0.0095 25 1 5.2609 -0.0539 -0.0106 26 1 2.0322 -3.2638 -0.5031 27 1 0.4906 -2.3738 -0.4987 28 1 2.0727 -2.9885 1.9112 29 1 0.9134 -6.3024 1.3633 30 1 1.9997 -5.2854 0.3863 31 1 2.1654 -5.3183 2.1582 32 1 -1.6590 -7.1693 2.3272 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598675389.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:40 Heat of formation + Delta-G solvation = 43.078950 kcal Electronic energy + Delta-G solvation = -14673.062039 eV Core-core repulsion = 12247.588062 eV Total energy + Delta-G solvation = -2425.473977 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.99255 -36.27110 -34.33880 -33.51990 -31.85426 -28.83463 -27.76089 -25.49068 -25.03709 -22.80426 -21.94160 -20.23084 -17.64721 -16.71081 -16.06389 -15.28882 -15.16367 -14.63244 -14.09378 -13.51758 -13.14837 -12.79945 -12.61620 -12.32557 -12.12109 -11.68347 -11.42258 -11.23945 -10.92111 -10.83929 -10.76897 -10.49289 -10.14497 -9.95312 -9.09040 -8.90414 -8.82817 -8.37067 -7.31450 -5.99587 -4.02980 0.92565 1.28873 3.32727 3.39003 3.43278 3.79981 4.17574 4.32208 4.44486 4.63780 4.89434 5.24913 5.32166 5.35858 5.44565 5.54988 5.78875 5.87162 6.12507 6.14156 6.24557 6.61396 6.70072 6.85191 7.07728 7.29936 7.44652 7.73125 7.85618 7.96446 8.22892 8.45899 8.56077 9.03852 9.62354 11.07436 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043368 B = 0.006421 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.486159 B = 4359.585081 C = 4630.259945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.100 3.900 3 N -0.446 5.446 4 C 0.040 3.960 5 C 0.037 3.963 6 N -0.436 5.436 7 C 0.097 3.903 8 C 0.106 3.894 9 N -0.675 5.675 10 C 0.212 3.788 11 H 0.036 0.964 12 C -0.170 4.170 13 C -0.495 4.495 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.898 3.102 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.275 1.275 21 H 0.091 0.909 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.164 0.836 25 H 0.164 0.836 26 H 0.041 0.959 27 H 0.089 0.911 28 H 0.329 0.671 29 H 0.090 0.910 30 H 0.006 0.994 31 H 0.028 0.972 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.595 10.765 -5.191 13.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.041 4.041 3 N -0.161 5.161 4 C -0.120 4.120 5 C -0.123 4.123 6 N -0.151 5.151 7 C -0.044 4.044 8 C -0.025 4.025 9 N -0.305 5.305 10 C 0.105 3.895 11 H 0.054 0.946 12 C -0.229 4.229 13 C -0.534 4.534 14 H 0.081 0.919 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.200 1.200 21 H 0.109 0.891 22 H 0.090 0.910 23 H 0.103 0.897 24 H 0.181 0.819 25 H 0.181 0.819 26 H 0.059 0.941 27 H 0.107 0.893 28 H 0.146 0.854 29 H 0.108 0.892 30 H 0.026 0.974 31 H 0.047 0.953 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.928 10.961 -5.143 13.481 hybrid contribution 0.486 -0.733 0.609 1.069 sum 6.414 10.228 -4.533 12.896 Atomic orbital electron populations 1.20752 0.87383 1.03225 1.04365 1.22135 0.98661 0.88667 0.94652 1.68279 1.08848 1.29472 1.09524 1.23644 0.90995 0.99578 0.97792 1.23666 1.01611 0.88972 0.98059 1.68293 1.08653 1.29781 1.08358 1.22302 0.90061 0.97206 0.94838 1.20860 0.97658 0.89689 0.94265 1.60920 1.25127 1.36166 1.08288 1.19208 0.90952 0.81423 0.97898 0.94624 1.22432 0.98996 1.05362 0.96119 1.21124 1.26996 1.03141 1.02110 0.91938 1.24939 0.96820 0.95682 0.97026 1.69882 1.40707 1.08210 1.34877 0.86500 0.80143 0.76961 0.83786 1.20725 1.21419 1.19983 0.89061 0.91044 0.89671 0.81871 0.81868 0.94055 0.89325 0.85422 0.89180 0.97449 0.95295 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 9.79 36.00 0.35 -1.03 16 2 C 0.10 1.57 6.78 -82.42 -0.56 1.01 16 3 N -0.45 -6.66 10.42 -9.29 -0.10 -6.75 16 4 C 0.04 0.49 11.23 -17.37 -0.20 0.29 16 5 C 0.04 0.46 11.23 -17.37 -0.20 0.27 16 6 N -0.44 -7.06 10.42 -9.29 -0.10 -7.16 16 7 C 0.10 1.63 6.30 -82.42 -0.52 1.11 16 8 C 0.11 1.91 5.39 -4.98 -0.03 1.88 16 9 N -0.67 -14.23 6.22 -109.22 -0.68 -14.91 16 10 C 0.21 5.23 2.57 -68.86 -0.18 5.05 16 11 H 0.04 0.94 7.80 -51.93 -0.40 0.54 16 12 C -0.17 -4.08 8.94 37.16 0.33 -3.75 16 13 C -0.49 -13.49 8.84 -34.44 -0.30 -13.80 16 14 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 15 C 0.06 1.53 5.30 -17.82 -0.09 1.44 16 16 N -0.90 -25.34 11.32 55.43 0.63 -24.72 16 17 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 22 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.08 1.14 5.95 -51.93 -0.31 0.83 16 24 H 0.16 1.35 8.06 -52.48 -0.42 0.92 16 25 H 0.16 1.46 8.06 -52.48 -0.42 1.03 16 26 H 0.04 0.77 7.44 -51.93 -0.39 0.38 16 27 H 0.09 1.51 5.85 -51.93 -0.30 1.21 16 28 H 0.33 7.00 8.47 -39.29 -0.33 6.67 16 29 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 30 H 0.01 0.14 7.45 -51.93 -0.39 -0.24 16 31 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 271.28 15.07 4.09 4.09 Total: -1.00 -29.71 271.28 -6.66 -36.37 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -4.10 Total: 4.28 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -1.39 Total: -7.52 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.25 Total: -53.54 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.71 -6.66 -36.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598675389.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.452 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds