Wall clock time and date at job start Sun Mar 29 2020 22:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32158 * 119.99879 * 2 1 4 4 C 1.32116 * 120.00140 * 180.27400 * 3 2 1 5 5 C 1.38392 * 119.99720 * 359.73913 * 4 3 2 6 6 N 1.32120 * 119.99672 * 359.97438 * 5 4 3 7 7 C 1.32152 * 120.00197 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99970 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.46771 * 89.99903 * 8 7 6 10 10 C 1.46906 * 110.99715 * 179.97438 * 9 8 7 11 11 H 1.08992 * 109.47459 * 324.99946 * 10 9 8 12 12 C 1.52997 * 109.46907 * 85.00213 * 10 9 8 13 13 C 1.50703 * 109.47109 * 205.00027 * 10 9 8 14 14 H 1.08005 * 119.99876 * 0.02562 * 13 10 9 15 15 C 1.37875 * 119.99989 * 180.02562 * 13 10 9 16 16 N 1.31518 * 119.99944 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47418 * 89.99710 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99770 * 17 15 13 20 20 H 1.48498 * 109.46997 * 329.99580 * 17 15 13 21 21 H 1.08995 * 109.47337 * 270.23896 * 1 2 3 22 22 H 1.08996 * 109.47459 * 30.24615 * 1 2 3 23 23 H 1.09001 * 109.47038 * 150.24437 * 1 2 3 24 24 H 1.08009 * 120.00430 * 179.75582 * 4 3 2 25 25 H 1.08004 * 119.99907 * 179.97438 * 5 4 3 26 26 H 1.08994 * 109.46873 * 330.00414 * 8 7 6 27 27 H 1.09001 * 109.46926 * 209.99728 * 8 7 6 28 28 H 1.00903 * 111.00454 * 303.95384 * 9 8 7 29 29 H 1.09002 * 109.47045 * 179.97438 * 12 10 9 30 30 H 1.09000 * 109.47140 * 299.99770 * 12 10 9 31 31 H 1.09001 * 109.47375 * 59.99788 * 12 10 9 32 32 H 0.96997 * 119.99752 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1445 0.0000 4 6 3.4889 1.1446 -0.0055 5 6 4.1809 -0.0539 -0.0057 6 7 3.5202 -1.1981 0.0000 7 6 2.1987 -1.1980 0.0054 8 6 1.4452 -2.5031 0.0114 9 7 1.2061 -2.9241 1.3983 10 6 0.4715 -4.1955 1.4433 11 1 -0.2353 -4.2363 0.6147 12 6 1.4585 -5.3590 1.3295 13 6 -0.2769 -4.2974 2.7474 14 1 -0.2135 -3.4974 3.4703 15 6 -1.0425 -5.4117 3.0177 16 7 -1.1201 -6.3856 2.1372 17 14 -1.9707 -5.5376 4.6338 18 1 -3.3258 -4.9517 4.4734 19 1 -2.0917 -6.9650 5.0252 20 1 -1.2324 -4.7963 5.6877 21 1 -0.3634 0.0043 1.0276 22 1 -0.3634 0.8877 -0.5176 23 1 -0.3633 -0.8922 -0.5100 24 1 4.0289 2.0800 -0.0095 25 1 5.2609 -0.0539 -0.0106 26 1 2.0322 -3.2638 -0.5031 27 1 0.4906 -2.3738 -0.4987 28 1 2.0727 -2.9885 1.9112 29 1 0.9134 -6.3024 1.3633 30 1 1.9997 -5.2854 0.3863 31 1 2.1654 -5.3183 2.1582 32 1 -1.6590 -7.1693 2.3272 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598675389.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:39 Heat of formation + Delta-G solvation = 21.793756 kcal Electronic energy + Delta-G solvation = -14673.985034 eV Core-core repulsion = 12247.588062 eV Total energy + Delta-G solvation = -2426.396972 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.10329 -37.97842 -35.50418 -35.08563 -33.53326 -30.49493 -28.90742 -27.27878 -26.77085 -23.96696 -23.19875 -22.14664 -18.79464 -18.52557 -17.30841 -16.82682 -16.53479 -16.20964 -15.50790 -15.11989 -14.80738 -14.10481 -13.84863 -13.64549 -13.61048 -13.44384 -12.91423 -12.75739 -12.69848 -12.51947 -12.22103 -12.13447 -12.01085 -11.85021 -11.07773 -10.47081 -10.02080 -9.98499 -9.04041 -8.08518 -6.19306 -0.15843 0.17949 1.44802 1.45479 1.55958 2.44923 2.70088 3.11232 3.20293 3.24943 3.57005 3.75712 3.86991 4.15839 4.37533 4.49167 4.57354 4.62828 4.73126 4.85352 4.88046 4.94454 5.09174 5.16755 5.37757 5.53916 5.69400 5.79936 6.25127 6.35476 6.58987 6.69372 6.87522 6.93037 7.50181 8.97145 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043368 B = 0.006421 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.486159 B = 4359.585081 C = 4630.259945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.087 3.913 3 N -0.462 5.462 4 C 0.053 3.947 5 C 0.040 3.960 6 N -0.461 5.461 7 C 0.073 3.927 8 C 0.113 3.887 9 N -0.673 5.673 10 C 0.218 3.782 11 H 0.013 0.987 12 C -0.157 4.157 13 C -0.513 4.513 14 H 0.054 0.946 15 C 0.011 3.989 16 N -0.921 5.921 17 Si 0.960 3.040 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.272 1.272 21 H 0.080 0.920 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.209 0.791 25 H 0.204 0.796 26 H 0.033 0.967 27 H 0.093 0.907 28 H 0.328 0.672 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.028 0.972 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.629 12.333 -4.961 15.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.052 4.052 3 N -0.178 5.178 4 C -0.108 4.108 5 C -0.121 4.121 6 N -0.177 5.177 7 C -0.067 4.067 8 C -0.017 4.017 9 N -0.303 5.303 10 C 0.110 3.890 11 H 0.031 0.969 12 C -0.217 4.217 13 C -0.552 4.552 14 H 0.072 0.928 15 C -0.187 4.187 16 N -0.562 5.562 17 Si 0.786 3.214 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.197 1.197 21 H 0.099 0.901 22 H 0.107 0.893 23 H 0.101 0.899 24 H 0.226 0.774 25 H 0.221 0.779 26 H 0.051 0.949 27 H 0.111 0.889 28 H 0.144 0.856 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.937 12.524 -4.920 15.139 hybrid contribution 0.304 -1.106 0.484 1.245 sum 7.241 11.418 -4.436 14.230 Atomic orbital electron populations 1.20723 0.86874 1.03952 1.03838 1.22226 0.99258 0.88680 0.95041 1.68354 1.10335 1.28908 1.10162 1.24431 0.90195 1.01345 0.94803 1.24377 1.03406 0.88057 0.96234 1.68233 1.08503 1.31897 1.09035 1.21954 0.90604 0.96548 0.97545 1.20752 0.98178 0.90597 0.92188 1.60764 1.24932 1.34081 1.10492 1.18971 0.90896 0.83189 0.95971 0.96929 1.22252 0.98607 1.03801 0.97000 1.21392 1.27751 1.03079 1.02982 0.92805 1.25674 0.97587 0.95359 1.00106 1.70000 1.41195 1.08560 1.36398 0.85532 0.78935 0.76982 0.79989 1.20143 1.20987 1.19670 0.90131 0.89338 0.89929 0.77394 0.77887 0.94900 0.88947 0.85576 0.91674 0.95743 0.95284 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.64 9.79 71.24 0.70 -1.94 16 2 C 0.09 2.66 6.78 42.53 0.29 2.94 16 3 N -0.46 -12.76 10.42 -183.29 -1.91 -14.67 16 4 C 0.05 1.11 11.23 84.69 0.95 2.06 16 5 C 0.04 0.88 11.23 84.69 0.95 1.83 16 6 N -0.46 -14.25 10.42 -183.29 -1.91 -16.16 16 7 C 0.07 2.41 6.30 42.54 0.27 2.68 16 8 C 0.11 4.13 5.39 85.56 0.46 4.59 16 9 N -0.67 -28.78 6.22 -499.47 -3.11 -31.89 16 10 C 0.22 10.95 2.57 44.17 0.11 11.06 16 11 H 0.01 0.69 7.80 -2.39 -0.02 0.68 16 12 C -0.16 -7.65 8.94 71.98 0.64 -7.01 16 13 C -0.51 -28.35 8.84 25.60 0.23 -28.12 16 14 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 15 C 0.01 0.61 5.30 84.65 0.45 1.06 16 16 N -0.92 -52.65 11.32 21.45 0.24 -52.41 16 17 Si 0.96 43.83 29.54 68.60 2.03 45.85 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 22 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.08 2.25 5.95 -2.39 -0.01 2.24 16 24 H 0.21 2.33 8.06 -2.91 -0.02 2.30 16 25 H 0.20 2.69 8.06 -2.91 -0.02 2.67 16 26 H 0.03 1.24 7.44 -2.39 -0.02 1.22 16 27 H 0.09 3.24 5.85 -2.39 -0.01 3.22 16 28 H 0.33 14.06 8.47 -89.69 -0.76 13.30 16 29 H 0.06 3.51 6.07 -2.39 -0.01 3.50 16 30 H 0.02 1.06 7.45 -2.39 -0.02 1.04 16 31 H 0.03 1.36 8.13 -2.39 -0.02 1.34 16 32 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -63.66 271.28 0.76 -62.90 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.37 Total: 17.23 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 5.05 Total: -10.85 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -6.68 Total: -115.13 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -63.66 0.76 -62.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598675389.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.699 kcal (2) G-P(sol) polarization free energy of solvation -63.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds