Wall clock time and date at job start Sun Mar 29 2020 22:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34670 * 126.58863 * 2 1 4 4 N 1.34124 * 108.02038 * 180.02562 * 3 2 1 5 5 C 1.30500 * 109.25792 * 0.02562 * 4 3 2 6 6 C 1.50693 * 125.65273 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.46952 * 275.02550 * 6 5 4 8 8 C 1.36936 * 120.00412 * 90.00074 * 7 6 5 9 9 H 1.07997 * 120.00468 * 215.29082 * 8 7 6 10 10 C 1.38818 * 120.00002 * 35.28120 * 8 7 6 11 11 N 1.31615 * 120.00290 * 202.15593 * 10 8 7 12 12 Si 1.86800 * 119.99676 * 22.16193 * 10 8 7 13 13 H 1.48499 * 109.47099 * 264.71733 * 12 10 8 14 14 H 1.48497 * 109.47318 * 24.71527 * 12 10 8 15 15 H 1.48500 * 109.47236 * 144.71711 * 12 10 8 16 16 C 1.46504 * 120.00105 * 269.99539 * 7 6 5 17 17 C 1.52999 * 117.49942 * 192.44836 * 16 7 6 18 18 C 1.53003 * 117.49531 * 123.78861 * 16 7 6 19 19 N 1.35043 * 108.69591 * 0.26216 * 5 4 3 20 20 H 0.97004 * 126.39434 * 179.73546 * 19 5 4 21 21 H 1.09005 * 109.47422 * 89.97794 * 1 2 3 22 22 H 1.09002 * 109.47334 * 209.97100 * 1 2 3 23 23 H 1.09000 * 109.47575 * 329.97610 * 1 2 3 24 24 H 1.07998 * 125.98716 * 0.04205 * 3 2 1 25 25 H 1.08996 * 109.47355 * 155.02722 * 6 5 4 26 26 H 1.09005 * 109.47082 * 35.02159 * 6 5 4 27 27 H 0.96997 * 119.99738 * 180.02562 * 11 10 8 28 28 H 1.09000 * 115.54953 * 338.12885 * 16 7 6 29 29 H 1.08994 * 117.49919 * 0.02562 * 17 16 7 30 30 H 1.09007 * 117.49420 * 145.02179 * 17 16 7 31 31 H 1.08996 * 117.49652 * 214.97919 * 18 16 7 32 32 H 1.08997 * 117.50371 * 359.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0813 0.0000 4 7 3.5811 0.6542 -0.0006 5 6 3.5968 -0.6507 -0.0015 6 6 4.8318 -1.5142 -0.0018 7 7 5.3016 -1.6939 -1.3777 8 6 6.1981 -0.8099 -1.9161 9 1 6.1374 -0.5490 -2.9623 10 6 7.1850 -0.2489 -1.1171 11 7 7.7543 0.8834 -1.4719 12 14 7.7050 -1.1013 0.4616 13 1 6.9553 -0.5239 1.6061 14 1 7.4116 -2.5535 0.3600 15 1 9.1615 -0.9043 0.6740 16 6 4.8124 -2.8195 -2.1777 17 6 5.5439 -3.1272 -3.4858 18 6 4.1489 -2.4977 -3.5183 19 7 2.3230 -1.0989 -0.0074 20 1 2.0392 -2.0265 -0.0129 21 1 -0.3634 0.0004 -1.0277 22 1 -0.3634 -0.8902 0.5134 23 1 -0.3634 0.8897 0.5142 24 1 1.9863 2.1117 0.0006 25 1 4.5957 -2.4862 0.4313 26 1 5.6117 -1.0331 0.5885 27 1 8.4441 1.2752 -0.9137 28 1 4.4184 -3.6631 -1.6108 29 1 6.3893 -2.4925 -3.7510 30 1 5.6309 -4.1733 -3.7797 31 1 3.3188 -3.1299 -3.8336 32 1 4.0760 -1.4486 -3.8049 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600116267.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:45 Heat of formation + Delta-G solvation = 112.290595 kcal Electronic energy + Delta-G solvation = -15238.632977 eV Core-core repulsion = 12816.160242 eV Total energy + Delta-G solvation = -2422.472734 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.39216 -37.25754 -33.78468 -32.16092 -31.71439 -30.68054 -27.32742 -24.77174 -23.63975 -21.50371 -20.53558 -20.13830 -19.71619 -17.21083 -16.15189 -15.48143 -15.24694 -14.54352 -13.95642 -13.51306 -13.25629 -12.84622 -12.63555 -12.35005 -12.24210 -12.15313 -12.03627 -10.90264 -10.79806 -10.69624 -10.14665 -9.97907 -9.63132 -9.41076 -9.30954 -9.11897 -8.44475 -7.62504 -6.85657 -5.94688 -3.37535 2.57278 3.34091 3.46920 3.48552 3.64472 3.84103 4.54057 4.76566 4.86918 5.12309 5.29578 5.30568 5.47620 5.63524 5.66812 5.75019 5.88366 5.92584 5.95050 6.01838 6.23095 6.36082 6.41993 6.46082 6.79916 6.85931 7.08268 7.38458 7.93969 8.03923 8.39205 8.89501 8.93738 9.71527 10.02236 11.20268 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024323 B = 0.011880 C = 0.009403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.911243 B = 2356.305393 C = 2977.107327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.057 4.057 3 C -0.027 4.027 4 N -0.467 5.467 5 C 0.218 3.782 6 C 0.211 3.789 7 N -0.557 5.557 8 C -0.272 4.272 9 H 0.081 0.919 10 C 0.050 3.950 11 N -0.886 5.886 12 Si 0.869 3.131 13 H -0.280 1.280 14 H -0.268 1.268 15 H -0.298 1.298 16 C 0.118 3.882 17 C -0.187 4.187 18 C -0.220 4.220 19 N -0.568 5.568 20 H 0.408 0.592 21 H 0.065 0.935 22 H 0.056 0.944 23 H 0.075 0.925 24 H 0.159 0.841 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.264 0.736 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.844 -6.926 3.062 14.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.172 4.172 3 C -0.176 4.176 4 N -0.185 5.185 5 C -0.049 4.049 6 C 0.083 3.917 7 N -0.274 5.274 8 C -0.400 4.400 9 H 0.098 0.902 10 C -0.152 4.152 11 N -0.525 5.525 12 Si 0.699 3.301 13 H -0.208 1.208 14 H -0.193 1.193 15 H -0.226 1.226 16 C 0.009 3.991 17 C -0.225 4.225 18 C -0.261 4.261 19 N -0.172 5.172 20 H 0.244 0.756 21 H 0.083 0.917 22 H 0.075 0.925 23 H 0.094 0.906 24 H 0.176 0.824 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.124 0.876 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.947 -6.203 3.104 12.959 hybrid contribution -0.648 -1.128 0.670 1.463 sum -11.594 -7.330 3.774 14.227 Atomic orbital electron populations 1.20080 0.88030 1.02442 1.01985 1.21081 0.93811 0.87864 1.14482 1.22101 0.89140 0.98019 1.08374 1.70397 1.21053 1.08684 1.18369 1.24957 0.85842 0.91872 1.02203 1.19857 0.89121 0.94199 0.88550 1.43658 1.47217 1.26330 1.10184 1.18525 1.05732 1.18684 0.97029 0.90174 1.25271 0.96443 0.95883 0.97565 1.69856 1.27504 1.15871 1.39313 0.87052 0.77189 0.81165 0.84669 1.20809 1.19281 1.22621 1.21082 1.00803 0.91016 0.86172 1.23131 0.96344 0.99891 1.03145 1.23351 0.95041 1.01146 1.06535 1.43276 1.07286 1.08521 1.58099 0.75559 0.91666 0.92477 0.90590 0.82386 0.92425 0.89602 0.92573 0.89189 0.87594 0.90377 0.90851 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.44 36.01 0.38 -0.36 16 2 C -0.06 -0.93 7.24 -81.60 -0.59 -1.52 16 3 C -0.03 -0.53 11.79 -17.81 -0.21 -0.74 16 4 N -0.47 -11.15 11.25 -10.82 -0.12 -11.27 16 5 C 0.22 4.66 7.74 -155.42 -1.20 3.46 16 6 C 0.21 4.63 5.17 -5.20 -0.03 4.60 16 7 N -0.56 -13.12 2.46 -167.02 -0.41 -13.53 16 8 C -0.27 -7.60 8.64 -15.06 -0.13 -7.73 16 9 H 0.08 2.46 7.32 -52.49 -0.38 2.07 16 10 C 0.05 1.46 5.32 -17.43 -0.09 1.37 16 11 N -0.89 -27.47 13.97 55.49 0.78 -26.70 16 12 Si 0.87 21.97 24.93 -169.99 -4.24 17.73 16 13 H -0.28 -7.01 6.67 56.52 0.38 -6.63 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 16 C 0.12 2.32 6.61 -67.93 -0.45 1.87 16 17 C -0.19 -3.53 9.79 -26.69 -0.26 -3.79 16 18 C -0.22 -4.12 10.13 -26.69 -0.27 -4.39 16 19 N -0.57 -9.52 6.15 -6.54 -0.04 -9.56 16 20 H 0.41 5.34 8.96 -40.82 -0.37 4.98 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.16 2.65 8.06 -52.49 -0.42 2.22 16 25 H 0.06 1.03 8.04 -51.93 -0.42 0.62 16 26 H 0.09 2.10 2.94 -51.93 -0.15 1.95 16 27 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 28 H 0.09 1.50 8.10 -51.93 -0.42 1.07 16 29 H 0.11 2.29 6.83 -51.93 -0.35 1.93 16 30 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.09 1.92 8.14 -51.93 -0.42 1.49 16 LS Contribution 269.93 15.07 4.07 4.07 Total: -1.00 -33.34 269.93 -7.04 -40.38 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -4.21 Total: 6.12 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -2.86 Total: -7.22 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: 0.20 Total: -61.07 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.24 Total: 17.73 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -33.34 -7.04 -40.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600116267.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.666 kcal (2) G-P(sol) polarization free energy of solvation -33.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds