Wall clock time and date at job start Sun Mar 29 2020 22:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34670 * 126.58863 * 2 1 4 4 N 1.34124 * 108.02038 * 180.02562 * 3 2 1 5 5 C 1.30500 * 109.25792 * 0.02562 * 4 3 2 6 6 C 1.50693 * 125.65273 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.46952 * 275.02550 * 6 5 4 8 8 C 1.36936 * 120.00412 * 90.00074 * 7 6 5 9 9 H 1.07997 * 120.00468 * 215.29082 * 8 7 6 10 10 C 1.38818 * 120.00002 * 35.28120 * 8 7 6 11 11 N 1.31615 * 120.00290 * 202.15593 * 10 8 7 12 12 Si 1.86800 * 119.99676 * 22.16193 * 10 8 7 13 13 H 1.48499 * 109.47099 * 264.71733 * 12 10 8 14 14 H 1.48497 * 109.47318 * 24.71527 * 12 10 8 15 15 H 1.48500 * 109.47236 * 144.71711 * 12 10 8 16 16 C 1.46504 * 120.00105 * 269.99539 * 7 6 5 17 17 C 1.52999 * 117.49942 * 192.44836 * 16 7 6 18 18 C 1.53003 * 117.49531 * 123.78861 * 16 7 6 19 19 N 1.35043 * 108.69591 * 0.26216 * 5 4 3 20 20 H 0.97004 * 126.39434 * 179.73546 * 19 5 4 21 21 H 1.09005 * 109.47422 * 89.97794 * 1 2 3 22 22 H 1.09002 * 109.47334 * 209.97100 * 1 2 3 23 23 H 1.09000 * 109.47575 * 329.97610 * 1 2 3 24 24 H 1.07998 * 125.98716 * 0.04205 * 3 2 1 25 25 H 1.08996 * 109.47355 * 155.02722 * 6 5 4 26 26 H 1.09005 * 109.47082 * 35.02159 * 6 5 4 27 27 H 0.96997 * 119.99738 * 180.02562 * 11 10 8 28 28 H 1.09000 * 115.54953 * 338.12885 * 16 7 6 29 29 H 1.08994 * 117.49919 * 0.02562 * 17 16 7 30 30 H 1.09007 * 117.49420 * 145.02179 * 17 16 7 31 31 H 1.08996 * 117.49652 * 214.97919 * 18 16 7 32 32 H 1.08997 * 117.50371 * 359.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0813 0.0000 4 7 3.5811 0.6542 -0.0006 5 6 3.5968 -0.6507 -0.0015 6 6 4.8318 -1.5142 -0.0018 7 7 5.3016 -1.6939 -1.3777 8 6 6.1981 -0.8099 -1.9161 9 1 6.1374 -0.5490 -2.9623 10 6 7.1850 -0.2489 -1.1171 11 7 7.7543 0.8834 -1.4719 12 14 7.7050 -1.1013 0.4616 13 1 6.9553 -0.5239 1.6061 14 1 7.4116 -2.5535 0.3600 15 1 9.1615 -0.9043 0.6740 16 6 4.8124 -2.8195 -2.1777 17 6 5.5439 -3.1272 -3.4858 18 6 4.1489 -2.4977 -3.5183 19 7 2.3230 -1.0989 -0.0074 20 1 2.0392 -2.0265 -0.0129 21 1 -0.3634 0.0004 -1.0277 22 1 -0.3634 -0.8902 0.5134 23 1 -0.3634 0.8897 0.5142 24 1 1.9863 2.1117 0.0006 25 1 4.5957 -2.4862 0.4313 26 1 5.6117 -1.0331 0.5885 27 1 8.4441 1.2752 -0.9137 28 1 4.4184 -3.6631 -1.6108 29 1 6.3893 -2.4925 -3.7510 30 1 5.6309 -4.1733 -3.7797 31 1 3.3188 -3.1299 -3.8336 32 1 4.0760 -1.4486 -3.8049 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600116267.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:45 Heat of formation + Delta-G solvation = 88.600872 kcal Electronic energy + Delta-G solvation = -15239.660240 eV Core-core repulsion = 12816.160242 eV Total energy + Delta-G solvation = -2423.499998 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.84594 -38.92796 -35.50087 -33.73870 -33.49212 -32.15402 -28.89656 -26.48994 -25.30505 -23.01909 -21.98430 -21.71333 -21.40117 -18.89370 -17.82650 -17.36074 -17.00474 -15.94595 -15.52039 -15.03668 -14.74270 -14.52698 -14.26032 -13.93678 -13.69619 -13.40823 -13.19772 -12.73715 -12.65274 -12.27484 -12.00917 -11.82072 -11.44702 -11.00810 -10.83032 -10.64978 -10.56463 -9.05641 -8.73412 -8.15924 -5.55505 1.16849 1.33367 1.41862 1.52050 2.24639 2.34531 2.44877 3.04476 3.24548 3.35916 3.75777 4.18305 4.21008 4.25060 4.36335 4.38371 4.42264 4.56213 4.64778 4.83220 4.90356 4.93665 4.99557 5.13095 5.27790 5.45514 5.52266 5.91852 5.97281 6.17864 6.69163 6.94181 7.42791 7.61699 7.95819 9.03773 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024323 B = 0.011880 C = 0.009403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.911243 B = 2356.305393 C = 2977.107327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.020 4.020 3 C -0.074 4.074 4 N -0.530 5.530 5 C 0.192 3.808 6 C 0.207 3.793 7 N -0.570 5.570 8 C -0.250 4.250 9 H 0.031 0.969 10 C -0.014 4.014 11 N -0.946 5.946 12 Si 0.941 3.059 13 H -0.280 1.280 14 H -0.238 1.238 15 H -0.308 1.308 16 C 0.108 3.892 17 C -0.187 4.187 18 C -0.210 4.210 19 N -0.549 5.549 20 H 0.429 0.571 21 H 0.079 0.921 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.170 0.830 25 H 0.107 0.893 26 H 0.057 0.943 27 H 0.261 0.739 28 H 0.140 0.860 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.796 -10.187 4.275 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.137 4.137 3 C -0.222 4.222 4 N -0.250 5.250 5 C -0.075 4.075 6 C 0.080 3.920 7 N -0.288 5.288 8 C -0.380 4.380 9 H 0.049 0.951 10 C -0.211 4.211 11 N -0.589 5.589 12 Si 0.769 3.231 13 H -0.208 1.208 14 H -0.162 1.162 15 H -0.236 1.236 16 C 0.001 3.999 17 C -0.225 4.225 18 C -0.251 4.251 19 N -0.154 5.154 20 H 0.270 0.730 21 H 0.097 0.903 22 H 0.103 0.897 23 H 0.112 0.888 24 H 0.187 0.813 25 H 0.125 0.875 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.157 0.843 29 H 0.083 0.917 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.948 -9.533 4.314 17.437 hybrid contribution 0.077 -0.065 0.189 0.214 sum -13.871 -9.598 4.503 17.459 Atomic orbital electron populations 1.20290 0.83653 1.04746 1.03548 1.21806 0.95975 0.86402 1.09550 1.22487 0.88552 0.99926 1.11226 1.70257 1.24066 1.10787 1.19932 1.24527 0.87289 0.91282 1.04354 1.19872 0.88682 0.96347 0.87094 1.43712 1.46948 1.27000 1.11172 1.18254 1.06208 1.18495 0.95025 0.95110 1.25973 0.96978 0.96373 1.01747 1.70017 1.29157 1.18107 1.41586 0.85902 0.75716 0.81332 0.80112 1.20801 1.16158 1.23633 1.21545 1.00958 0.91049 0.86385 1.23128 0.95023 1.01335 1.03032 1.23262 0.96343 0.99437 1.06025 1.43099 1.05835 1.09843 1.56643 0.73038 0.90254 0.89689 0.88845 0.81302 0.87523 0.92550 0.93021 0.84257 0.91702 0.86294 0.86757 0.93662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.11 10.44 71.24 0.74 -0.37 16 2 C -0.02 -0.60 7.24 40.95 0.30 -0.30 16 3 C -0.07 -2.86 11.79 83.52 0.98 -1.88 16 4 N -0.53 -25.74 11.25 -188.14 -2.12 -27.85 16 5 C 0.19 7.99 7.74 138.13 1.07 9.06 16 6 C 0.21 8.69 5.17 85.63 0.44 9.14 16 7 N -0.57 -26.39 2.46 -682.34 -1.68 -28.07 16 8 C -0.25 -14.56 8.64 84.04 0.73 -13.83 16 9 H 0.03 2.05 7.32 -2.91 -0.02 2.03 16 10 C -0.01 -0.85 5.32 84.86 0.45 -0.40 16 11 N -0.95 -62.21 13.97 21.65 0.30 -61.91 16 12 Si 0.94 46.72 24.93 68.60 1.71 48.43 16 13 H -0.28 -13.74 6.67 99.48 0.66 -13.07 16 14 H -0.24 -10.53 7.11 99.48 0.71 -9.82 16 15 H -0.31 -15.49 7.11 99.48 0.71 -14.78 16 16 C 0.11 3.91 6.61 44.99 0.30 4.21 16 17 C -0.19 -6.75 9.79 30.62 0.30 -6.45 16 18 C -0.21 -7.47 10.13 30.62 0.31 -7.16 16 19 N -0.55 -16.59 6.15 -174.61 -1.07 -17.66 16 20 H 0.43 9.12 8.96 -92.71 -0.83 8.29 16 21 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 22 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 23 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.17 5.71 8.06 -2.91 -0.02 5.68 16 25 H 0.11 3.33 8.04 -2.39 -0.02 3.31 16 26 H 0.06 2.71 2.94 -2.38 -0.01 2.70 16 27 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 28 H 0.14 3.76 8.10 -2.39 -0.02 3.74 16 29 H 0.06 2.89 6.83 -2.39 -0.02 2.88 16 30 H 0.12 3.32 8.14 -2.38 -0.02 3.30 16 31 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 32 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -79.57 269.93 3.01 -76.56 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.25 Total: 18.49 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 5.62 Total: -7.97 kcal Atomic # 7 Polarization: -130.93 SS G_CDS: -4.57 Total: -135.50 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.71 Total: 48.43 kcal Total: -79.57 3.01 -76.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600116267.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.160 kcal (2) G-P(sol) polarization free energy of solvation -79.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds