Wall clock time and date at job start Sun Mar 29 2020 22:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34663 * 126.59645 * 2 1 4 4 N 1.34131 * 108.02519 * 179.97438 * 3 2 1 5 5 C 1.30499 * 109.25058 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.64665 * 180.02562 * 5 4 3 7 7 N 1.46906 * 109.47109 * 275.02765 * 6 5 4 8 8 C 1.47474 * 110.99751 * 265.97224 * 7 6 5 9 9 C 1.53514 * 87.93334 * 221.29509 * 8 7 6 10 10 C 1.50696 * 114.34847 * 139.68021 * 9 8 7 11 11 H 1.08005 * 119.99940 * 266.08436 * 10 9 8 12 12 C 1.37876 * 119.99733 * 86.07709 * 10 9 8 13 13 N 1.31516 * 120.00306 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99982 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46967 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47293 * 120.00151 * 14 12 10 17 17 H 1.48499 * 109.46909 * 240.00298 * 14 12 10 18 18 C 1.47478 * 111.00052 * 169.99720 * 7 6 5 19 19 N 1.35037 * 108.70270 * 0.26445 * 5 4 3 20 20 H 0.97006 * 126.39472 * 179.73697 * 19 5 4 21 21 H 1.09001 * 109.47220 * 90.01958 * 1 2 3 22 22 H 1.09001 * 109.47448 * 210.02217 * 1 2 3 23 23 H 1.09001 * 109.46932 * 330.02560 * 1 2 3 24 24 H 1.08004 * 125.98564 * 0.02562 * 3 2 1 25 25 H 1.08992 * 109.46894 * 155.02500 * 6 5 4 26 26 H 1.09004 * 109.47113 * 35.02651 * 6 5 4 27 27 H 1.08998 * 113.47885 * 336.06194 * 8 7 6 28 28 H 1.09004 * 113.47794 * 106.53057 * 8 7 6 29 29 H 1.08995 * 114.17336 * 272.38170 * 9 8 7 30 30 H 0.96995 * 120.00409 * 179.97438 * 13 12 10 31 31 H 1.09001 * 113.47916 * 253.46887 * 18 7 6 32 32 H 1.09005 * 113.47385 * 23.87749 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0811 0.0000 4 7 3.5812 0.6540 0.0006 5 6 3.5967 -0.6509 0.0004 6 6 4.8317 -1.5146 0.0014 7 7 5.3039 -1.6956 -1.3779 8 6 4.7628 -2.9364 -1.9632 9 6 6.1459 -3.1815 -2.5825 10 6 6.6008 -4.6175 -2.5382 11 1 7.2169 -4.9639 -1.7215 12 6 6.2304 -5.4892 -3.5402 13 7 5.4805 -5.0673 -4.5349 14 14 6.7937 -7.2694 -3.4850 15 1 7.6204 -7.4895 -2.2712 16 1 5.6081 -8.1627 -3.4445 17 1 7.5998 -7.5712 -4.6951 18 6 6.6347 -2.3306 -1.4019 19 7 2.3229 -1.0991 -0.0062 20 1 2.0391 -2.0267 -0.0115 21 1 -0.3634 -0.0004 -1.0277 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3633 0.8902 0.5134 24 1 1.9865 2.1117 0.0004 25 1 4.5951 -2.4862 0.4349 26 1 5.6112 -1.0333 0.5921 27 1 4.4822 -3.6814 -1.2186 28 1 3.9806 -2.7628 -2.7023 29 1 6.2874 -2.7152 -3.5575 30 1 5.2203 -5.6804 -5.2400 31 1 7.4390 -1.6437 -1.6654 32 1 6.8541 -2.9131 -0.5071 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600179519.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:17 Heat of formation + Delta-G solvation = 85.792906 kcal Electronic energy + Delta-G solvation = -14579.140228 eV Core-core repulsion = 12155.518468 eV Total energy + Delta-G solvation = -2423.621760 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.84426 -38.88210 -33.06139 -32.55342 -31.88035 -29.83967 -26.74170 -24.94829 -24.81163 -22.57524 -20.88490 -20.11849 -18.68668 -17.25654 -16.52317 -15.31916 -14.75471 -14.55204 -14.16719 -13.98725 -13.76829 -13.13636 -12.76671 -12.64985 -12.44683 -11.97498 -11.76399 -11.24675 -11.03910 -10.66825 -10.37956 -9.89172 -9.75849 -9.70194 -9.32162 -9.01119 -8.50638 -8.09912 -7.96194 -6.10526 -4.15715 2.20098 3.23819 3.25977 3.32624 3.35738 3.37937 4.35653 4.66097 4.95112 5.04948 5.09566 5.19506 5.42992 5.44871 5.50618 5.74989 5.78855 5.91579 6.06285 6.25780 6.34750 6.42953 6.62708 6.65202 6.94715 7.04582 7.10187 7.55774 7.67966 7.84958 7.99265 8.31358 8.37241 8.88503 9.49882 10.99008 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046396 B = 0.005939 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.355221 B = 4713.357930 C = 5033.315360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.040 4.040 3 C -0.029 4.029 4 N -0.482 5.482 5 C 0.238 3.762 6 C 0.101 3.899 7 N -0.474 5.474 8 C 0.000 4.000 9 C 0.043 3.957 10 C -0.516 4.516 11 H 0.059 0.941 12 C 0.067 3.933 13 N -0.886 5.886 14 Si 0.891 3.109 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.282 1.282 18 C -0.003 4.003 19 N -0.563 5.563 20 H 0.416 0.584 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.165 0.835 25 H 0.055 0.945 26 H 0.095 0.905 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.261 0.739 31 H 0.067 0.933 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.013 5.683 8.993 13.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.155 4.155 3 C -0.177 4.177 4 N -0.201 5.201 5 C -0.027 4.027 6 C -0.029 4.029 7 N -0.197 5.197 8 C -0.129 4.129 9 C 0.024 3.976 10 C -0.555 4.555 11 H 0.078 0.922 12 C -0.136 4.136 13 N -0.523 5.523 14 Si 0.719 3.281 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.208 1.208 18 C -0.131 4.131 19 N -0.166 5.166 20 H 0.253 0.747 21 H 0.089 0.911 22 H 0.080 0.920 23 H 0.098 0.902 24 H 0.182 0.818 25 H 0.073 0.927 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.523 6.856 8.540 13.286 hybrid contribution -0.704 -2.649 0.419 2.772 sum -8.227 4.208 8.959 12.870 Atomic orbital electron populations 1.20164 0.87467 1.02911 1.02580 1.21204 0.94256 0.87388 1.12680 1.22071 0.88631 0.98294 1.08711 1.70222 1.22005 1.08357 1.19519 1.23115 0.85246 0.90940 1.03356 1.21010 0.91358 0.95730 0.94850 1.68932 1.05887 1.32327 1.12579 1.24191 1.02224 0.88105 0.98343 1.20082 0.89745 0.94466 0.93324 1.21072 1.32399 0.93803 1.08190 0.92244 1.25032 0.94745 0.98795 0.95057 1.69982 1.35831 1.35320 1.11190 0.86555 0.78534 0.84882 0.78151 1.19664 1.21043 1.20835 1.24035 0.91532 0.96645 1.00923 1.43195 1.07145 1.09245 1.57010 0.74694 0.91095 0.92020 0.90224 0.81770 0.92710 0.88687 0.92948 0.91966 0.91654 0.92875 0.91499 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.44 36.00 0.38 -0.29 16 2 C -0.04 -0.54 7.24 -81.60 -0.59 -1.13 16 3 C -0.03 -0.44 11.79 -17.81 -0.21 -0.65 16 4 N -0.48 -8.94 11.25 -10.82 -0.12 -9.06 16 5 C 0.24 4.14 7.74 -155.42 -1.20 2.93 16 6 C 0.10 1.74 5.44 -4.97 -0.03 1.72 16 7 N -0.47 -9.76 6.32 -246.07 -1.55 -11.31 16 8 C 0.00 0.01 7.28 -7.54 -0.05 -0.05 16 9 C 0.04 1.06 3.76 -91.24 -0.34 0.72 16 10 C -0.52 -13.75 8.83 -34.44 -0.30 -14.05 16 11 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 12 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 13 N -0.89 -25.28 13.26 55.43 0.74 -24.54 16 14 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 C 0.00 -0.06 7.25 -7.54 -0.05 -0.11 16 19 N -0.56 -8.20 6.15 -6.54 -0.04 -8.24 16 20 H 0.42 5.07 8.96 -40.82 -0.37 4.71 16 21 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.16 2.04 8.06 -52.48 -0.42 1.62 16 25 H 0.05 0.86 7.30 -51.93 -0.38 0.49 16 26 H 0.09 1.56 8.08 -51.93 -0.42 1.14 16 27 H 0.05 1.13 7.38 -51.93 -0.38 0.75 16 28 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.07 1.80 8.11 -51.93 -0.42 1.38 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.06 1.11 7.87 -51.93 -0.41 0.70 16 LS Contribution 275.66 15.07 4.15 4.15 Total: -1.00 -30.78 275.66 -8.82 -39.60 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.46 Total: 2.99 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -2.51 Total: -9.20 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.98 Total: -53.16 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.78 -8.82 -39.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600179519.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.392 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds