Wall clock time and date at job start Sun Mar 29 2020 22:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34663 * 126.59645 * 2 1 4 4 N 1.34131 * 108.02519 * 179.97438 * 3 2 1 5 5 C 1.30499 * 109.25058 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.64665 * 180.02562 * 5 4 3 7 7 N 1.46906 * 109.47109 * 275.02765 * 6 5 4 8 8 C 1.47474 * 110.99751 * 265.97224 * 7 6 5 9 9 C 1.53514 * 87.93334 * 221.29509 * 8 7 6 10 10 C 1.50696 * 114.34847 * 139.68021 * 9 8 7 11 11 H 1.08005 * 119.99940 * 266.08436 * 10 9 8 12 12 C 1.37876 * 119.99733 * 86.07709 * 10 9 8 13 13 N 1.31516 * 120.00306 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99982 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46967 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47293 * 120.00151 * 14 12 10 17 17 H 1.48499 * 109.46909 * 240.00298 * 14 12 10 18 18 C 1.47478 * 111.00052 * 169.99720 * 7 6 5 19 19 N 1.35037 * 108.70270 * 0.26445 * 5 4 3 20 20 H 0.97006 * 126.39472 * 179.73697 * 19 5 4 21 21 H 1.09001 * 109.47220 * 90.01958 * 1 2 3 22 22 H 1.09001 * 109.47448 * 210.02217 * 1 2 3 23 23 H 1.09001 * 109.46932 * 330.02560 * 1 2 3 24 24 H 1.08004 * 125.98564 * 0.02562 * 3 2 1 25 25 H 1.08992 * 109.46894 * 155.02500 * 6 5 4 26 26 H 1.09004 * 109.47113 * 35.02651 * 6 5 4 27 27 H 1.08998 * 113.47885 * 336.06194 * 8 7 6 28 28 H 1.09004 * 113.47794 * 106.53057 * 8 7 6 29 29 H 1.08995 * 114.17336 * 272.38170 * 9 8 7 30 30 H 0.96995 * 120.00409 * 179.97438 * 13 12 10 31 31 H 1.09001 * 113.47916 * 253.46887 * 18 7 6 32 32 H 1.09005 * 113.47385 * 23.87749 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0811 0.0000 4 7 3.5812 0.6540 0.0006 5 6 3.5967 -0.6509 0.0004 6 6 4.8317 -1.5146 0.0014 7 7 5.3039 -1.6956 -1.3779 8 6 4.7628 -2.9364 -1.9632 9 6 6.1459 -3.1815 -2.5825 10 6 6.6008 -4.6175 -2.5382 11 1 7.2169 -4.9639 -1.7215 12 6 6.2304 -5.4892 -3.5402 13 7 5.4805 -5.0673 -4.5349 14 14 6.7937 -7.2694 -3.4850 15 1 7.6204 -7.4895 -2.2712 16 1 5.6081 -8.1627 -3.4445 17 1 7.5998 -7.5712 -4.6951 18 6 6.6347 -2.3306 -1.4019 19 7 2.3229 -1.0991 -0.0062 20 1 2.0391 -2.0267 -0.0115 21 1 -0.3634 -0.0004 -1.0277 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3633 0.8902 0.5134 24 1 1.9865 2.1117 0.0004 25 1 4.5951 -2.4862 0.4349 26 1 5.6112 -1.0333 0.5921 27 1 4.4822 -3.6814 -1.2186 28 1 3.9806 -2.7628 -2.7023 29 1 6.2874 -2.7152 -3.5575 30 1 5.2203 -5.6804 -5.2400 31 1 7.4390 -1.6437 -1.6654 32 1 6.8541 -2.9131 -0.5071 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600179519.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:17 Heat of formation + Delta-G solvation = 63.669953 kcal Electronic energy + Delta-G solvation = -14580.099552 eV Core-core repulsion = 12155.518468 eV Total energy + Delta-G solvation = -2424.581084 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.02388 -40.59418 -34.89127 -33.79209 -33.21008 -31.20352 -28.34180 -26.59905 -26.33464 -24.20554 -22.04249 -21.36282 -20.50228 -18.83116 -18.11329 -16.87810 -16.43010 -16.14769 -15.63550 -15.46790 -15.01160 -14.27614 -13.99085 -13.92954 -13.52880 -13.41525 -13.24976 -13.05430 -12.86854 -12.39295 -12.14385 -11.73374 -11.20284 -10.98240 -10.92491 -10.91308 -10.52887 -9.75145 -9.13444 -8.15821 -6.27781 1.04927 1.42236 1.44888 1.56215 2.09729 2.20813 2.42729 3.13522 3.35878 3.49064 4.02482 4.10014 4.24664 4.28268 4.37362 4.47841 4.55555 4.65266 4.78169 4.80900 4.83384 4.94617 5.09540 5.18414 5.34610 5.43693 5.62234 5.82948 5.85583 6.24943 6.31225 6.48920 6.82920 7.17177 7.41581 8.94308 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046396 B = 0.005939 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.355221 B = 4713.357930 C = 5033.315360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.022 4.022 3 C -0.059 4.059 4 N -0.516 5.516 5 C 0.210 3.790 6 C 0.105 3.895 7 N -0.484 5.484 8 C 0.018 3.982 9 C 0.021 3.979 10 C -0.527 4.527 11 H 0.065 0.935 12 C 0.014 3.986 13 N -0.925 5.925 14 Si 0.960 3.040 15 H -0.261 1.261 16 H -0.280 1.280 17 H -0.283 1.283 18 C 0.013 3.987 19 N -0.558 5.558 20 H 0.426 0.574 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.101 0.899 24 H 0.186 0.814 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.025 0.975 30 H 0.262 0.738 31 H 0.073 0.927 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.893 5.158 10.480 14.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.139 4.139 3 C -0.207 4.207 4 N -0.236 5.236 5 C -0.054 4.054 6 C -0.025 4.025 7 N -0.207 5.207 8 C -0.111 4.111 9 C 0.002 3.998 10 C -0.565 4.565 11 H 0.083 0.917 12 C -0.185 4.185 13 N -0.564 5.564 14 Si 0.785 3.215 15 H -0.185 1.185 16 H -0.206 1.206 17 H -0.209 1.209 18 C -0.115 4.115 19 N -0.163 5.163 20 H 0.265 0.735 21 H 0.097 0.903 22 H 0.096 0.904 23 H 0.120 0.880 24 H 0.203 0.797 25 H 0.091 0.909 26 H 0.122 0.878 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.400 6.329 10.046 14.545 hybrid contribution -0.486 -2.388 -0.035 2.437 sum -8.886 3.942 10.012 13.955 Atomic orbital electron populations 1.20342 0.84056 1.04860 1.03642 1.21913 0.96144 0.86373 1.09462 1.22571 0.88030 1.00045 1.10030 1.70135 1.24069 1.09239 1.20207 1.22993 0.86121 0.90876 1.05457 1.20986 0.91942 0.96835 0.92737 1.68850 1.05454 1.31125 1.15238 1.23896 1.00002 0.89243 0.97947 1.20020 0.92382 0.94350 0.93062 1.21403 1.32096 0.94687 1.08283 0.91713 1.25852 0.94844 1.03103 0.94705 1.70115 1.37344 1.36842 1.12066 0.85485 0.78125 0.79610 0.78307 1.18517 1.20630 1.20863 1.23873 0.91955 0.96065 0.99657 1.43230 1.06588 1.10175 1.56262 0.73475 0.90298 0.90367 0.88032 0.79678 0.90922 0.87822 0.91983 0.94280 0.95635 0.92889 0.90838 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.44 71.23 0.74 -0.32 16 2 C -0.02 -0.56 7.24 40.95 0.30 -0.26 16 3 C -0.06 -1.75 11.79 83.52 0.98 -0.76 16 4 N -0.52 -18.84 11.25 -188.13 -2.12 -20.95 16 5 C 0.21 7.09 7.74 138.13 1.07 8.16 16 6 C 0.10 3.49 5.44 85.56 0.47 3.96 16 7 N -0.48 -19.70 6.32 -932.44 -5.89 -25.59 16 8 C 0.02 0.82 7.28 83.58 0.61 1.43 16 9 C 0.02 1.06 3.76 -11.19 -0.04 1.02 16 10 C -0.53 -28.01 8.83 25.60 0.23 -27.78 16 11 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 12 C 0.01 0.77 5.46 84.65 0.46 1.23 16 13 N -0.92 -53.76 13.26 21.45 0.28 -53.47 16 14 Si 0.96 42.15 29.54 68.60 2.03 44.18 16 15 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 16 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 18 C 0.01 0.53 7.25 83.58 0.61 1.13 16 19 N -0.56 -15.38 6.15 -174.61 -1.07 -16.46 16 20 H 0.43 9.62 8.96 -92.70 -0.83 8.79 16 21 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.19 4.32 8.06 -2.91 -0.02 4.30 16 25 H 0.07 2.14 7.30 -2.39 -0.02 2.13 16 26 H 0.10 3.24 8.08 -2.38 -0.02 3.23 16 27 H 0.06 2.63 7.38 -2.39 -0.02 2.62 16 28 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.03 1.47 8.11 -2.39 -0.02 1.45 16 30 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 31 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 32 H 0.07 2.78 7.87 -2.38 -0.02 2.76 16 Total: -1.00 -66.57 275.66 -1.07 -67.63 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.28 Total: 16.85 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 5.42 Total: -12.19 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -8.80 Total: -116.47 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -66.57 -1.07 -67.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600179519.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.304 kcal (2) G-P(sol) polarization free energy of solvation -66.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds