Wall clock time and date at job start Sun Mar 29 2020 21:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35904 * 116.99925 * 2 1 4 4 C 1.38813 * 120.01561 * 359.97414 * 3 2 1 5 5 C 1.38173 * 120.09174 * 180.02562 * 4 3 2 6 6 C 1.38159 * 120.12689 * 359.74623 * 5 4 3 7 7 C 1.38933 * 120.03556 * 0.51144 * 6 5 4 8 8 N 1.39660 * 120.04470 * 179.76803 * 7 6 5 9 9 C 1.46500 * 120.00301 * 359.72055 * 8 7 6 10 10 C 1.50706 * 109.46949 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00167 * 359.72205 * 10 9 8 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99350 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47353 * 89.99430 * 14 12 10 16 16 H 1.48494 * 109.47031 * 209.99977 * 14 12 10 17 17 H 1.48504 * 109.46680 * 329.99678 * 14 12 10 18 18 C 1.38572 * 120.01651 * 179.97438 * 3 2 1 19 19 C 1.50696 * 120.06453 * 0.02562 * 18 3 2 20 20 H 1.08996 * 109.47346 * 60.00008 * 1 2 3 21 21 H 1.09001 * 109.46898 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47359 * 300.00208 * 1 2 3 23 23 H 1.08000 * 119.95449 * 0.05213 * 4 3 2 24 24 H 1.07999 * 119.93524 * 180.02562 * 5 4 3 25 25 H 1.08004 * 119.97934 * 180.27732 * 6 5 4 26 26 H 0.97010 * 119.99789 * 179.72533 * 8 7 6 27 27 H 1.09000 * 109.47175 * 60.00227 * 9 8 7 28 28 H 1.09001 * 109.47297 * 299.99735 * 9 8 7 29 29 H 0.97005 * 119.99656 * 180.02562 * 13 12 10 30 30 H 1.08997 * 109.46952 * 269.97165 * 19 18 3 31 31 H 1.08998 * 109.47409 * 29.97377 * 19 18 3 32 32 H 1.09004 * 109.46772 * 149.97660 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2902 2.3753 -0.0005 5 6 1.9158 3.6073 -0.0011 6 6 3.2953 3.6845 0.0042 7 6 4.0568 2.5225 -0.0006 8 7 5.4513 2.6004 -0.0002 9 6 6.1120 3.9079 -0.0008 10 6 7.6067 3.7155 -0.0007 11 1 8.0228 2.7189 0.0042 12 6 8.4428 4.8118 -0.0018 13 7 9.7472 4.6438 -0.0012 14 14 7.7231 6.5355 -0.0025 15 1 7.5328 6.9932 1.3974 16 1 8.6509 7.4590 -0.7035 17 1 6.4132 6.5246 -0.7020 18 6 3.4297 1.2839 0.0005 19 6 4.2523 0.0212 0.0005 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 0.2117 2.3182 -0.0001 24 1 1.3254 4.5116 -0.0011 25 1 3.7818 4.6487 0.0083 26 1 5.9824 1.7886 0.0005 27 1 5.8169 4.4645 0.8888 28 1 5.8176 4.4634 -0.8912 29 1 10.3355 5.4151 -0.0016 30 1 4.4506 -0.2832 1.0282 31 1 3.7049 -0.7690 -0.5133 32 1 5.1963 0.2026 -0.5133 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600754900.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:07 Heat of formation + Delta-G solvation = -17.996378 kcal Electronic energy + Delta-G solvation = -14583.088339 eV Core-core repulsion = 12122.673186 eV Total energy + Delta-G solvation = -2460.415153 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.91822 -37.71664 -34.70914 -32.77282 -31.97862 -29.07104 -27.47968 -27.10673 -25.80266 -22.59712 -20.94195 -20.49070 -17.89407 -16.93638 -16.21171 -15.60517 -15.22483 -14.92857 -14.47746 -13.87912 -13.70127 -12.93953 -12.91952 -12.79147 -12.41714 -12.13671 -11.77044 -11.76417 -11.12414 -11.08045 -10.78100 -10.69219 -10.49920 -9.99242 -9.48931 -9.39397 -8.71628 -7.79988 -6.72604 -6.23548 -4.25541 1.86499 2.08318 3.21006 3.28238 3.30649 3.43025 4.26968 4.27945 4.43771 5.05655 5.10886 5.17859 5.26451 5.32114 5.45801 5.55555 5.78739 5.88817 6.03997 6.07565 6.10352 6.55348 6.64595 6.68677 6.85682 6.96937 6.98886 7.03456 7.35587 7.71567 7.93472 8.38393 8.56663 8.79510 9.35596 10.88918 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050878 B = 0.006459 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.204400 B = 4333.662581 C = 4858.117691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.319 6.319 3 C 0.167 3.833 4 C -0.283 4.283 5 C -0.039 4.039 6 C -0.235 4.235 7 C 0.264 3.736 8 N -0.716 5.716 9 C 0.222 3.778 10 C -0.541 4.541 11 H 0.079 0.921 12 C 0.077 3.923 13 N -0.892 5.892 14 Si 0.879 3.121 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.263 1.263 18 C -0.212 4.212 19 C -0.091 4.091 20 H 0.052 0.948 21 H 0.093 0.907 22 H 0.052 0.948 23 H 0.116 0.884 24 H 0.116 0.884 25 H 0.121 0.879 26 H 0.398 0.602 27 H 0.015 0.985 28 H 0.020 0.980 29 H 0.268 0.732 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.576 -5.172 -0.029 17.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.232 6.232 3 C 0.121 3.879 4 C -0.304 4.304 5 C -0.058 4.058 6 C -0.258 4.258 7 C 0.154 3.846 8 N -0.339 5.339 9 C 0.099 3.901 10 C -0.579 4.579 11 H 0.097 0.903 12 C -0.127 4.127 13 N -0.529 5.529 14 Si 0.705 3.295 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.188 1.188 18 C -0.218 4.218 19 C -0.148 4.148 20 H 0.070 0.930 21 H 0.111 0.889 22 H 0.070 0.930 23 H 0.133 0.867 24 H 0.134 0.866 25 H 0.139 0.861 26 H 0.234 0.766 27 H 0.033 0.967 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.147 -5.054 -0.031 16.919 hybrid contribution -0.283 0.908 0.021 0.952 sum -16.430 -4.146 -0.011 16.945 Atomic orbital electron populations 1.22947 0.79184 1.03090 1.01181 1.86007 1.20667 1.27645 1.88887 1.18401 0.91035 0.83547 0.94879 1.20726 0.98887 0.92300 1.18483 1.20535 0.93782 0.96429 0.95093 1.20598 0.93599 0.97308 1.14285 1.17548 0.84893 0.92146 0.90042 1.45296 1.01366 1.10183 1.77063 1.19527 0.93495 0.81323 0.95734 1.21064 0.88144 0.95647 1.53052 0.90336 1.24816 0.94660 0.99255 0.93982 1.69884 1.02486 1.31136 1.49417 0.86801 0.79628 0.84167 0.78895 1.19843 1.20845 1.18753 1.18466 0.90740 0.94387 1.18227 1.20330 0.98513 0.94506 1.01422 0.92960 0.88896 0.92953 0.86653 0.86628 0.86078 0.76564 0.96725 0.96275 0.92245 0.92365 0.91823 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.60 9.54 -19.44 -0.19 -4.79 16 3 C 0.17 2.72 6.66 -39.25 -0.26 2.46 16 4 C -0.28 -4.25 9.04 -39.39 -0.36 -4.60 16 5 C -0.04 -0.62 10.03 -39.63 -0.40 -1.01 16 6 C -0.23 -4.31 9.31 -39.35 -0.37 -4.68 16 7 C 0.26 5.13 6.63 -83.81 -0.56 4.57 16 8 N -0.72 -15.10 5.62 -59.82 -0.34 -15.43 16 9 C 0.22 5.28 3.73 -5.19 -0.02 5.27 16 10 C -0.54 -14.91 9.83 -34.44 -0.34 -15.25 16 11 H 0.08 2.30 7.84 -52.49 -0.41 1.89 16 12 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 13 N -0.89 -26.52 13.96 55.43 0.77 -25.74 16 14 Si 0.88 20.79 27.47 -169.99 -4.67 16.12 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 18 C -0.21 -3.77 5.91 -104.28 -0.62 -4.38 16 19 C -0.09 -1.43 9.35 36.00 0.34 -1.09 16 20 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 21 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 23 H 0.12 1.41 6.29 -52.49 -0.33 1.08 16 24 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 25 H 0.12 2.26 6.73 -52.48 -0.35 1.90 16 26 H 0.40 8.08 6.31 -40.82 -0.26 7.82 16 27 H 0.02 0.36 7.37 -51.93 -0.38 -0.03 16 28 H 0.02 0.47 7.01 -51.93 -0.36 0.10 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.93 7.53 -51.93 -0.39 0.54 16 32 H 0.06 0.91 6.55 -51.93 -0.34 0.57 16 LS Contribution 266.71 15.07 4.02 4.02 Total: -1.00 -29.95 266.71 -6.14 -36.09 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -4.06 Total: 5.10 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -1.68 Total: -15.36 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.44 Total: -41.18 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.19 Total: -4.79 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.67 Total: 16.12 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.95 -6.14 -36.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600754900.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.096 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds