Wall clock time and date at job start Sun Mar 29 2020 21:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35904 * 116.99925 * 2 1 4 4 C 1.38813 * 120.01561 * 359.97414 * 3 2 1 5 5 C 1.38173 * 120.09174 * 180.02562 * 4 3 2 6 6 C 1.38159 * 120.12689 * 359.74623 * 5 4 3 7 7 C 1.38933 * 120.03556 * 0.51144 * 6 5 4 8 8 N 1.39660 * 120.04470 * 179.76803 * 7 6 5 9 9 C 1.46500 * 120.00301 * 359.72055 * 8 7 6 10 10 C 1.50706 * 109.46949 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00167 * 359.72205 * 10 9 8 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99350 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47353 * 89.99430 * 14 12 10 16 16 H 1.48494 * 109.47031 * 209.99977 * 14 12 10 17 17 H 1.48504 * 109.46680 * 329.99678 * 14 12 10 18 18 C 1.38572 * 120.01651 * 179.97438 * 3 2 1 19 19 C 1.50696 * 120.06453 * 0.02562 * 18 3 2 20 20 H 1.08996 * 109.47346 * 60.00008 * 1 2 3 21 21 H 1.09001 * 109.46898 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47359 * 300.00208 * 1 2 3 23 23 H 1.08000 * 119.95449 * 0.05213 * 4 3 2 24 24 H 1.07999 * 119.93524 * 180.02562 * 5 4 3 25 25 H 1.08004 * 119.97934 * 180.27732 * 6 5 4 26 26 H 0.97010 * 119.99789 * 179.72533 * 8 7 6 27 27 H 1.09000 * 109.47175 * 60.00227 * 9 8 7 28 28 H 1.09001 * 109.47297 * 299.99735 * 9 8 7 29 29 H 0.97005 * 119.99656 * 180.02562 * 13 12 10 30 30 H 1.08997 * 109.46952 * 269.97165 * 19 18 3 31 31 H 1.08998 * 109.47409 * 29.97377 * 19 18 3 32 32 H 1.09004 * 109.46772 * 149.97660 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2902 2.3753 -0.0005 5 6 1.9158 3.6073 -0.0011 6 6 3.2953 3.6845 0.0042 7 6 4.0568 2.5225 -0.0006 8 7 5.4513 2.6004 -0.0002 9 6 6.1120 3.9079 -0.0008 10 6 7.6067 3.7155 -0.0007 11 1 8.0228 2.7189 0.0042 12 6 8.4428 4.8118 -0.0018 13 7 9.7472 4.6438 -0.0012 14 14 7.7231 6.5355 -0.0025 15 1 7.5328 6.9932 1.3974 16 1 8.6509 7.4590 -0.7035 17 1 6.4132 6.5246 -0.7020 18 6 3.4297 1.2839 0.0005 19 6 4.2523 0.0212 0.0005 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 0.2117 2.3182 -0.0001 24 1 1.3254 4.5116 -0.0011 25 1 3.7818 4.6487 0.0083 26 1 5.9824 1.7886 0.0005 27 1 5.8169 4.4645 0.8888 28 1 5.8176 4.4634 -0.8912 29 1 10.3355 5.4151 -0.0016 30 1 4.4506 -0.2832 1.0282 31 1 3.7049 -0.7690 -0.5133 32 1 5.1963 0.2026 -0.5133 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600754900.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:06 Heat of formation + Delta-G solvation = -37.467598 kcal Electronic energy + Delta-G solvation = -14583.932674 eV Core-core repulsion = 12122.673186 eV Total energy + Delta-G solvation = -2461.259488 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.13235 -38.97723 -36.28480 -34.62020 -33.44241 -30.65566 -28.69014 -28.40069 -27.11883 -24.37809 -22.27498 -21.89590 -19.49110 -18.51954 -17.66804 -16.64652 -16.59425 -16.21344 -16.19059 -15.43640 -15.26027 -14.61949 -14.24930 -14.16457 -13.97813 -13.31233 -13.02781 -12.95791 -12.76923 -12.69126 -12.18294 -12.01811 -11.88322 -11.69907 -11.53482 -10.97553 -10.67918 -9.04111 -8.39072 -8.21538 -6.47179 0.58232 0.77222 1.35396 1.36431 1.47952 2.29082 2.34164 2.94108 2.94342 2.99289 4.00195 4.15069 4.26129 4.38878 4.48828 4.58947 4.61881 4.64876 4.79197 4.81527 4.83616 4.86552 5.07534 5.28655 5.36530 5.41706 5.55265 5.67940 5.73996 6.02637 6.50787 6.59040 6.64828 6.99155 7.20898 8.76820 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050878 B = 0.006459 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.204400 B = 4333.662581 C = 4858.117691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.332 6.332 3 C 0.164 3.836 4 C -0.272 4.272 5 C -0.035 4.035 6 C -0.256 4.256 7 C 0.238 3.762 8 N -0.729 5.729 9 C 0.239 3.761 10 C -0.552 4.552 11 H 0.043 0.957 12 C 0.019 3.981 13 N -0.938 5.938 14 Si 0.949 3.051 15 H -0.263 1.263 16 H -0.277 1.277 17 H -0.246 1.246 18 C -0.228 4.228 19 C -0.087 4.087 20 H 0.064 0.936 21 H 0.118 0.882 22 H 0.064 0.936 23 H 0.150 0.850 24 H 0.149 0.851 25 H 0.113 0.887 26 H 0.396 0.604 27 H 0.016 0.984 28 H 0.018 0.982 29 H 0.272 0.728 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.833 -4.508 -0.016 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.245 6.245 3 C 0.117 3.883 4 C -0.292 4.292 5 C -0.054 4.054 6 C -0.279 4.279 7 C 0.131 3.869 8 N -0.355 5.355 9 C 0.115 3.885 10 C -0.590 4.590 11 H 0.061 0.939 12 C -0.181 4.181 13 N -0.577 5.577 14 Si 0.771 3.229 15 H -0.187 1.187 16 H -0.203 1.203 17 H -0.170 1.170 18 C -0.234 4.234 19 C -0.144 4.144 20 H 0.082 0.918 21 H 0.136 0.864 22 H 0.082 0.918 23 H 0.168 0.832 24 H 0.167 0.833 25 H 0.131 0.869 26 H 0.232 0.768 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.464 -4.420 -0.018 19.960 hybrid contribution 0.583 0.529 0.018 0.788 sum -18.881 -3.891 0.000 19.278 Atomic orbital electron populations 1.23322 0.76547 1.05310 1.02263 1.86000 1.23335 1.26728 1.88460 1.18536 0.90737 0.84864 0.94122 1.21150 1.00625 0.91439 1.16001 1.20903 0.92803 0.98159 0.93514 1.20754 0.95019 0.96588 1.15538 1.17776 0.83945 0.93453 0.91758 1.45054 1.02354 1.08881 1.79197 1.19155 0.91043 0.82818 0.95497 1.21330 0.90520 0.94338 1.52774 0.93913 1.25779 0.94884 1.04044 0.93347 1.70024 1.04143 1.32720 1.50854 0.85695 0.79465 0.78181 0.79569 1.18748 1.20251 1.16986 1.18714 0.92038 0.94301 1.18352 1.20307 0.98158 0.94266 1.01663 0.91779 0.86379 0.91783 0.83212 0.83326 0.86885 0.76785 0.96589 0.96463 0.91915 0.92053 0.90793 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.33 -8.63 9.54 -92.47 -0.88 -9.52 16 3 C 0.16 4.95 6.66 22.49 0.15 5.10 16 4 C -0.27 -7.15 9.04 22.39 0.20 -6.94 16 5 C -0.04 -0.99 10.03 22.24 0.22 -0.77 16 6 C -0.26 -9.09 9.31 22.42 0.21 -8.88 16 7 C 0.24 9.21 6.63 38.20 0.25 9.46 16 8 N -0.73 -31.56 5.62 -343.18 -1.93 -33.49 16 9 C 0.24 11.52 3.73 85.63 0.32 11.84 16 10 C -0.55 -31.44 9.83 25.60 0.25 -31.19 16 11 H 0.04 2.66 7.84 -2.91 -0.02 2.64 16 12 C 0.02 1.07 5.47 84.66 0.46 1.54 16 13 N -0.94 -57.33 13.96 21.45 0.30 -57.03 16 14 Si 0.95 42.81 27.47 68.60 1.88 44.70 16 15 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 16 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.25 -10.37 6.54 99.48 0.65 -9.72 16 18 C -0.23 -7.95 5.91 -19.64 -0.12 -8.06 16 19 C -0.09 -2.73 9.35 71.23 0.67 -2.06 16 20 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 21 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 22 H 0.06 0.87 7.66 -2.38 -0.02 0.85 16 23 H 0.15 2.87 6.29 -2.91 -0.02 2.85 16 24 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 25 H 0.11 4.11 6.73 -2.91 -0.02 4.09 16 26 H 0.40 16.92 6.31 -92.70 -0.59 16.33 16 27 H 0.02 0.78 7.37 -2.39 -0.02 0.76 16 28 H 0.02 0.85 7.01 -2.39 -0.02 0.83 16 29 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 2.11 7.53 -2.39 -0.02 2.09 16 32 H 0.05 1.66 6.55 -2.39 -0.02 1.64 16 Total: -1.00 -65.63 266.71 3.59 -62.04 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.48 Total: 21.84 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: 3.73 Total: -28.55 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -1.63 Total: -90.52 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.88 Total: -9.52 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.88 Total: 44.70 kcal Total: -65.63 3.59 -62.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600754900.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.576 kcal (2) G-P(sol) polarization free energy of solvation -65.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds