Wall clock time and date at job start Sun Mar 29 2020 22:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38596 * 120.80344 * 2 1 4 4 N 1.32334 * 119.10763 * 179.97438 * 3 2 1 5 5 C 1.31790 * 120.81753 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.12503 * 179.97438 * 5 4 3 7 7 N 1.46895 * 109.47505 * 89.99816 * 6 5 4 8 8 C 1.46902 * 111.00561 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.46719 * 34.99912 * 8 7 6 10 10 C 1.52997 * 109.47094 * 275.00137 * 8 7 6 11 11 C 1.50697 * 109.47181 * 154.99698 * 8 7 6 12 12 H 1.07999 * 120.00055 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99687 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00458 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99926 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.46872 * 59.99743 * 15 13 11 17 17 H 1.48503 * 109.47008 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.46914 * 299.99916 * 15 13 11 19 19 N 1.31795 * 121.75657 * 0.27233 * 5 4 3 20 20 C 1.32342 * 120.81454 * 359.44140 * 19 5 4 21 21 H 1.09003 * 109.47014 * 89.99512 * 1 2 3 22 22 H 1.08998 * 109.47154 * 209.99571 * 1 2 3 23 23 H 1.09002 * 109.46954 * 329.99487 * 1 2 3 24 24 H 1.08003 * 120.45009 * 359.96386 * 3 2 1 25 25 H 1.09004 * 109.47109 * 329.99831 * 6 5 4 26 26 H 1.09001 * 109.47475 * 209.99869 * 6 5 4 27 27 H 1.00902 * 110.99823 * 303.95691 * 7 6 5 28 28 H 1.09002 * 109.47153 * 299.99508 * 10 8 7 29 29 H 1.09001 * 109.46832 * 179.97438 * 10 8 7 30 30 H 1.09004 * 109.47261 * 59.99681 * 10 8 7 31 31 H 0.96999 * 120.00480 * 179.97438 * 14 13 11 32 32 H 1.08000 * 120.44368 * 180.25235 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1904 0.0000 4 7 3.5395 1.1513 0.0005 5 6 4.1808 0.0000 0.0005 6 6 5.6878 -0.0001 0.0005 7 7 6.1776 -0.0001 1.3854 8 6 7.6461 0.0004 1.4247 9 1 8.0315 0.5901 0.5929 10 6 8.1598 -1.4363 1.3124 11 6 8.1136 0.6010 2.7253 12 1 7.3921 0.9472 3.4505 13 6 9.4626 0.7084 2.9895 14 7 10.3412 0.2863 2.1067 15 14 10.0422 1.4521 4.6021 16 1 9.5176 0.6479 5.7350 17 1 11.5267 1.4527 4.6416 18 1 9.5430 2.8463 4.7118 19 7 3.5395 -1.1514 -0.0053 20 6 2.2166 -1.1905 -0.0003 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6973 2.1374 -0.0006 25 1 6.0512 0.8899 -0.5133 26 1 6.0512 -0.8901 -0.5133 27 1 5.8021 0.7813 1.9017 28 1 7.7743 -2.0260 2.1442 29 1 9.2494 -1.4359 1.3411 30 1 7.8215 -1.8707 0.3716 31 1 11.2903 0.3622 2.2924 32 1 1.6972 -2.1374 -0.0011 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602868656.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:47 Heat of formation + Delta-G solvation = 41.383255 kcal Electronic energy + Delta-G solvation = -14370.421226 eV Core-core repulsion = 11944.873719 eV Total energy + Delta-G solvation = -2425.547507 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.92099 -36.06690 -33.96867 -33.55407 -32.30487 -29.45509 -27.19689 -25.28919 -24.53636 -24.17811 -21.62527 -19.76354 -17.63039 -17.06366 -16.01386 -15.11385 -14.75005 -14.44486 -14.06331 -13.61854 -13.56695 -13.23553 -12.81526 -12.62399 -12.31725 -11.76277 -11.22524 -10.93194 -10.75721 -10.70023 -10.64583 -10.26482 -10.09395 -9.98244 -9.12712 -9.02802 -8.80209 -8.44573 -7.29715 -5.99877 -4.06223 0.96920 1.22729 3.34046 3.37923 3.41095 3.84352 4.16144 4.32019 4.44012 4.61251 4.75294 4.77237 5.30827 5.32030 5.41110 5.47845 5.58067 5.73593 5.82720 6.16676 6.20484 6.55097 6.91738 7.13549 7.19015 7.24953 7.50764 7.79876 7.91138 8.27556 8.32768 8.37419 8.65008 9.02458 9.59205 11.06511 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051840 B = 0.005512 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.993888 B = 5078.635428 C = 5344.360348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.210 4.210 3 C 0.145 3.855 4 N -0.513 5.513 5 C 0.332 3.668 6 C 0.125 3.875 7 N -0.678 5.678 8 C 0.213 3.787 9 H 0.005 0.995 10 C -0.124 4.124 11 C -0.518 4.518 12 H 0.059 0.941 13 C 0.063 3.937 14 N -0.890 5.890 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.278 1.278 19 N -0.498 5.498 20 C 0.145 3.855 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.163 0.837 25 H 0.048 0.952 26 H 0.090 0.910 27 H 0.333 0.667 28 H 0.032 0.968 29 H 0.081 0.919 30 H 0.006 0.994 31 H 0.262 0.738 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.765 -0.261 -5.105 17.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.215 4.215 3 C -0.022 4.022 4 N -0.227 5.227 5 C 0.065 3.935 6 C -0.006 4.006 7 N -0.310 5.310 8 C 0.106 3.894 9 H 0.022 0.978 10 C -0.183 4.183 11 C -0.557 4.557 12 H 0.077 0.923 13 C -0.139 4.139 14 N -0.528 5.528 15 Si 0.726 3.274 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 N -0.211 5.211 20 C -0.022 4.022 21 H 0.090 0.910 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.180 0.820 25 H 0.066 0.934 26 H 0.108 0.892 27 H 0.150 0.850 28 H 0.051 0.949 29 H 0.100 0.900 30 H 0.025 0.975 31 H 0.072 0.928 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -15.554 -0.967 -5.078 16.390 hybrid contribution -0.489 1.280 0.630 1.508 sum -16.042 0.313 -4.448 16.651 Atomic orbital electron populations 1.20593 0.89515 1.03226 1.02472 1.21658 0.98827 0.95915 1.05067 1.23118 0.89776 0.97987 0.91298 1.68321 1.09742 1.30974 1.13630 1.23478 0.98299 0.82871 0.88833 1.20683 0.83744 1.01857 0.94364 1.60792 1.12590 1.49246 1.08417 1.19146 0.79935 0.93866 0.96433 0.97786 1.21718 1.03047 0.96907 0.96613 1.21191 0.91839 1.40035 1.02621 0.92299 1.24900 0.96644 0.95404 0.96950 1.69885 1.01530 1.46714 1.34716 0.86564 0.77383 0.79630 0.83832 1.20221 1.21273 1.20320 1.68338 1.09352 1.30781 1.12621 1.23183 0.89907 0.97965 0.91146 0.90994 0.91151 0.91188 0.81987 0.93357 0.89172 0.84970 0.94887 0.90018 0.97489 0.92845 0.81951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.06 36.00 0.36 -0.32 16 2 C -0.21 -2.34 5.91 -104.36 -0.62 -2.96 16 3 C 0.14 1.85 11.01 -17.20 -0.19 1.66 16 4 N -0.51 -8.63 10.33 -10.73 -0.11 -8.74 16 5 C 0.33 6.06 7.15 -157.20 -1.12 4.93 16 6 C 0.12 2.49 5.92 -4.98 -0.03 2.47 16 7 N -0.68 -15.57 6.29 -109.22 -0.69 -16.26 16 8 C 0.21 5.58 2.60 -68.87 -0.18 5.40 16 9 H 0.00 0.13 7.80 -51.93 -0.40 -0.28 16 10 C -0.12 -3.19 9.19 37.16 0.34 -2.85 16 11 C -0.52 -14.58 8.59 -34.44 -0.30 -14.88 16 12 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 13 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 14 N -0.89 -25.71 11.32 55.43 0.63 -25.08 16 15 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 N -0.50 -8.54 10.34 -10.72 -0.11 -8.65 16 20 C 0.14 1.87 11.01 -17.20 -0.19 1.69 16 21 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 22 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 23 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 24 H 0.16 1.50 8.06 -52.48 -0.42 1.08 16 25 H 0.05 0.96 8.05 -51.93 -0.42 0.54 16 26 H 0.09 1.80 7.44 -51.93 -0.39 1.42 16 27 H 0.33 7.67 8.21 -39.29 -0.32 7.35 16 28 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 30 H 0.01 0.14 7.45 -51.93 -0.39 -0.24 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 275.46 15.07 4.15 4.15 Total: -1.00 -31.15 275.46 -7.47 -38.62 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -4.30 Total: 2.57 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -2.02 Total: -3.19 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.28 Total: -58.73 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.15 -7.47 -38.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868656.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.004 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds