Wall clock time and date at job start Sun Mar 29 2020 22:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38596 * 120.80344 * 2 1 4 4 N 1.32334 * 119.10763 * 179.97438 * 3 2 1 5 5 C 1.31790 * 120.81753 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.12503 * 179.97438 * 5 4 3 7 7 N 1.46895 * 109.47505 * 89.99816 * 6 5 4 8 8 C 1.46902 * 111.00561 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.46719 * 34.99912 * 8 7 6 10 10 C 1.52997 * 109.47094 * 275.00137 * 8 7 6 11 11 C 1.50697 * 109.47181 * 154.99698 * 8 7 6 12 12 H 1.07999 * 120.00055 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99687 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00458 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99926 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.46872 * 59.99743 * 15 13 11 17 17 H 1.48503 * 109.47008 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.46914 * 299.99916 * 15 13 11 19 19 N 1.31795 * 121.75657 * 0.27233 * 5 4 3 20 20 C 1.32342 * 120.81454 * 359.44140 * 19 5 4 21 21 H 1.09003 * 109.47014 * 89.99512 * 1 2 3 22 22 H 1.08998 * 109.47154 * 209.99571 * 1 2 3 23 23 H 1.09002 * 109.46954 * 329.99487 * 1 2 3 24 24 H 1.08003 * 120.45009 * 359.96386 * 3 2 1 25 25 H 1.09004 * 109.47109 * 329.99831 * 6 5 4 26 26 H 1.09001 * 109.47475 * 209.99869 * 6 5 4 27 27 H 1.00902 * 110.99823 * 303.95691 * 7 6 5 28 28 H 1.09002 * 109.47153 * 299.99508 * 10 8 7 29 29 H 1.09001 * 109.46832 * 179.97438 * 10 8 7 30 30 H 1.09004 * 109.47261 * 59.99681 * 10 8 7 31 31 H 0.96999 * 120.00480 * 179.97438 * 14 13 11 32 32 H 1.08000 * 120.44368 * 180.25235 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1904 0.0000 4 7 3.5395 1.1513 0.0005 5 6 4.1808 0.0000 0.0005 6 6 5.6878 -0.0001 0.0005 7 7 6.1776 -0.0001 1.3854 8 6 7.6461 0.0004 1.4247 9 1 8.0315 0.5901 0.5929 10 6 8.1598 -1.4363 1.3124 11 6 8.1136 0.6010 2.7253 12 1 7.3921 0.9472 3.4505 13 6 9.4626 0.7084 2.9895 14 7 10.3412 0.2863 2.1067 15 14 10.0422 1.4521 4.6021 16 1 9.5176 0.6479 5.7350 17 1 11.5267 1.4527 4.6416 18 1 9.5430 2.8463 4.7118 19 7 3.5395 -1.1514 -0.0053 20 6 2.2166 -1.1905 -0.0003 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6973 2.1374 -0.0006 25 1 6.0512 0.8899 -0.5133 26 1 6.0512 -0.8901 -0.5133 27 1 5.8021 0.7813 1.9017 28 1 7.7743 -2.0260 2.1442 29 1 9.2494 -1.4359 1.3411 30 1 7.8215 -1.8707 0.3716 31 1 11.2903 0.3622 2.2924 32 1 1.6972 -2.1374 -0.0011 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602868656.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:47 Heat of formation + Delta-G solvation = 19.395274 kcal Electronic energy + Delta-G solvation = -14371.374697 eV Core-core repulsion = 11944.873719 eV Total energy + Delta-G solvation = -2426.500978 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.03551 -37.88636 -35.31157 -34.68660 -34.06174 -31.14835 -28.55463 -27.33155 -25.62581 -25.55625 -22.83231 -21.78794 -18.89180 -18.69414 -17.53446 -16.86112 -16.22169 -15.84442 -15.34019 -15.16981 -14.87835 -14.46232 -14.10005 -13.75579 -13.57154 -13.14237 -13.07036 -12.79416 -12.70623 -12.33943 -12.20335 -12.06088 -11.87217 -11.65319 -10.94737 -10.58567 -10.15770 -10.10662 -9.18391 -8.14062 -6.28793 -0.11995 0.19379 1.42541 1.44988 1.52723 2.40824 2.68878 2.95240 3.14403 3.26732 3.71677 3.76943 3.95541 3.98947 4.29596 4.44769 4.63364 4.76841 4.84681 4.87396 5.07398 5.10343 5.17068 5.18428 5.42545 5.52484 5.63238 5.81209 6.07049 6.18428 6.36652 6.64964 6.90487 7.16776 7.40928 8.91772 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051840 B = 0.005512 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.993888 B = 5078.635428 C = 5344.360348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.184 4.184 3 C 0.131 3.869 4 N -0.538 5.538 5 C 0.305 3.695 6 C 0.131 3.869 7 N -0.676 5.676 8 C 0.217 3.783 9 H -0.024 1.024 10 C -0.112 4.112 11 C -0.541 4.541 12 H 0.056 0.944 13 C 0.016 3.984 14 N -0.916 5.916 15 Si 0.966 3.034 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.271 1.271 19 N -0.527 5.527 20 C 0.130 3.870 21 H 0.090 0.910 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.198 0.802 25 H 0.041 0.959 26 H 0.083 0.917 27 H 0.331 0.669 28 H 0.026 0.974 29 H 0.061 0.939 30 H 0.023 0.977 31 H 0.264 0.736 32 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.192 -0.008 -4.561 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.188 4.188 3 C -0.035 4.035 4 N -0.252 5.252 5 C 0.037 3.963 6 C 0.000 4.000 7 N -0.307 5.307 8 C 0.109 3.891 9 H -0.006 1.006 10 C -0.170 4.170 11 C -0.580 4.580 12 H 0.074 0.926 13 C -0.184 4.184 14 N -0.555 5.555 15 Si 0.791 3.209 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.196 1.196 19 N -0.240 5.240 20 C -0.035 4.035 21 H 0.109 0.891 22 H 0.104 0.896 23 H 0.105 0.895 24 H 0.215 0.785 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.147 0.853 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -18.016 -0.718 -4.544 18.594 hybrid contribution 0.090 1.191 0.392 1.257 sum -17.927 0.473 -4.153 18.407 Atomic orbital electron populations 1.20734 0.85792 1.04883 1.04082 1.22136 1.01167 0.94462 1.01080 1.23804 0.88567 1.00324 0.90767 1.68225 1.12011 1.30567 1.14417 1.22833 0.97201 0.84012 0.92206 1.20498 0.86065 1.01096 0.92300 1.60681 1.10527 1.48994 1.10527 1.18970 0.81877 0.93425 0.94838 1.00640 1.21537 1.01574 0.96725 0.97187 1.21483 0.92382 1.40770 1.03332 0.92563 1.25728 0.96645 0.95635 1.00389 1.70007 1.01818 1.47233 1.36415 0.85500 0.77029 0.78928 0.79477 1.19720 1.20574 1.19592 1.68228 1.11705 1.30530 1.13574 1.23850 0.88672 1.00321 0.90695 0.89113 0.89552 0.89547 0.78526 0.94114 0.89838 0.85259 0.95458 0.92016 0.95838 0.92645 0.78569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.06 71.23 0.72 -0.15 16 2 C -0.18 -3.52 5.91 -19.69 -0.12 -3.64 16 3 C 0.13 3.05 11.01 84.70 0.93 3.98 16 4 N -0.54 -17.91 10.33 -187.85 -1.94 -19.85 16 5 C 0.31 11.25 7.15 138.75 0.99 12.25 16 6 C 0.13 5.47 5.92 85.56 0.51 5.97 16 7 N -0.68 -32.01 6.29 -499.47 -3.14 -35.15 16 8 C 0.22 11.74 2.60 44.17 0.11 11.85 16 9 H -0.02 -1.40 7.80 -2.39 -0.02 -1.42 16 10 C -0.11 -5.89 9.19 71.98 0.66 -5.22 16 11 C -0.54 -31.04 8.59 25.60 0.22 -30.82 16 12 H 0.06 3.18 7.62 -2.91 -0.02 3.15 16 13 C 0.02 0.88 5.30 84.66 0.45 1.33 16 14 N -0.92 -53.73 11.32 21.45 0.24 -53.49 16 15 Si 0.97 44.39 29.54 68.60 2.03 46.41 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 N -0.53 -17.85 10.34 -187.84 -1.94 -19.79 16 20 C 0.13 3.08 11.01 84.70 0.93 4.01 16 21 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 22 H 0.09 0.58 8.10 -2.39 -0.02 0.56 16 23 H 0.09 0.57 8.10 -2.39 -0.02 0.55 16 24 H 0.20 2.99 8.06 -2.91 -0.02 2.96 16 25 H 0.04 1.72 8.05 -2.39 -0.02 1.70 16 26 H 0.08 3.49 7.44 -2.39 -0.02 3.47 16 27 H 0.33 15.72 8.21 -89.69 -0.74 14.98 16 28 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 3.49 6.07 -2.39 -0.01 3.47 16 30 H 0.02 1.10 7.45 -2.38 -0.02 1.08 16 31 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 32 H 0.20 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -68.63 275.46 1.03 -67.59 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.38 Total: 14.70 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 5.41 Total: -0.43 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -6.78 Total: -128.28 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -68.63 1.03 -67.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868656.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.989 kcal (2) G-P(sol) polarization free energy of solvation -68.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds