Wall clock time and date at job start Sun Mar 29 2020 22:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38607 * 120.79962 * 2 1 4 4 N 1.32327 * 119.10439 * 179.97438 * 3 2 1 5 5 C 1.31795 * 120.81997 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.12196 * 179.97438 * 5 4 3 7 7 N 1.46904 * 109.47201 * 90.00063 * 6 5 4 8 8 C 1.46904 * 111.00152 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.46956 * 324.99875 * 8 7 6 10 10 C 1.53000 * 109.46945 * 84.99616 * 8 7 6 11 11 C 1.50693 * 109.46986 * 204.99793 * 8 7 6 12 12 H 1.08001 * 120.00156 * 354.36414 * 11 8 7 13 13 C 1.37883 * 119.99975 * 174.36110 * 11 8 7 14 14 N 1.31514 * 119.99792 * 156.55708 * 13 11 8 15 15 Si 1.86795 * 120.00000 * 336.83419 * 13 11 8 16 16 H 1.48494 * 109.47243 * 179.72421 * 15 13 11 17 17 H 1.48501 * 109.46953 * 299.72341 * 15 13 11 18 18 H 1.48500 * 109.47267 * 59.72084 * 15 13 11 19 19 N 1.31788 * 121.75563 * 0.27438 * 5 4 3 20 20 C 1.32337 * 120.81778 * 359.44099 * 19 5 4 21 21 H 1.08994 * 109.47073 * 90.00564 * 1 2 3 22 22 H 1.09002 * 109.46864 * 210.00027 * 1 2 3 23 23 H 1.08995 * 109.47278 * 329.99976 * 1 2 3 24 24 H 1.07991 * 120.44514 * 359.95333 * 3 2 1 25 25 H 1.08999 * 109.47595 * 329.99898 * 6 5 4 26 26 H 1.09000 * 109.47165 * 209.99806 * 6 5 4 27 27 H 1.00892 * 110.99818 * 56.04385 * 7 6 5 28 28 H 1.08996 * 109.47340 * 293.06818 * 10 8 7 29 29 H 1.09000 * 109.46855 * 53.06982 * 10 8 7 30 30 H 1.08997 * 109.46527 * 173.06766 * 10 8 7 31 31 H 0.96996 * 119.99955 * 355.20631 * 14 13 11 32 32 H 1.08005 * 120.44943 * 180.25216 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2167 1.1906 0.0000 4 7 3.5394 1.1514 0.0005 5 6 4.1808 0.0001 0.0005 6 6 5.6878 0.0002 0.0005 7 7 6.1775 0.0002 1.3856 8 6 7.6460 0.0009 1.4248 9 1 8.0320 -0.5883 0.5929 10 6 8.1585 1.4382 1.3128 11 6 8.1140 -0.5995 2.7253 12 1 7.3960 -0.8630 3.4878 13 6 9.4590 -0.8125 2.9418 14 7 9.9237 -0.8867 4.1699 15 14 10.6222 -0.9881 1.4908 16 1 12.0051 -1.2017 1.9880 17 1 10.2089 -2.1494 0.6628 18 1 10.5774 0.2474 0.6681 19 7 3.5395 -1.1512 -0.0054 20 6 2.2167 -1.1904 -0.0004 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8899 0.5138 24 1 1.6972 2.1373 -0.0008 25 1 6.0512 0.8902 -0.5133 26 1 6.0512 -0.8898 -0.5133 27 1 5.8020 -0.7811 1.9018 28 1 7.9261 1.8307 0.3229 29 1 7.6767 2.0557 2.0709 30 1 9.2377 1.4519 1.4651 31 1 9.3339 -0.7226 4.9223 32 1 1.6972 -2.1373 -0.0012 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602868658.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:49 Heat of formation + Delta-G solvation = 16.829047 kcal Electronic energy + Delta-G solvation = -14419.641030 eV Core-core repulsion = 11993.028773 eV Total energy + Delta-G solvation = -2426.612258 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.06236 -38.01131 -35.34127 -34.71352 -34.22398 -31.61365 -28.72152 -26.93316 -25.61994 -25.51715 -22.82010 -21.60251 -19.76447 -18.78446 -17.79405 -16.68671 -16.32537 -15.62005 -15.34840 -15.33569 -14.95724 -14.50356 -14.16499 -13.93488 -13.67511 -13.41727 -13.15327 -13.00837 -12.76734 -12.30711 -11.93878 -11.89078 -11.77298 -11.63445 -11.07451 -10.42845 -10.18929 -10.15497 -9.29945 -8.77878 -6.37347 -0.14891 0.16031 1.47743 1.53376 1.73714 2.49114 2.63514 2.93396 2.99054 3.23844 3.63246 3.68958 3.92675 3.95803 4.25247 4.40114 4.53478 4.63177 4.77585 4.84664 4.85340 4.91444 5.07272 5.07577 5.15763 5.49465 5.57024 5.73186 6.01250 6.03599 6.19697 6.53904 6.68287 7.13321 7.37511 8.57947 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.056403 B = 0.005682 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.305480 B = 4926.843443 C = 4991.855921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.184 4.184 3 C 0.130 3.870 4 N -0.525 5.525 5 C 0.302 3.698 6 C 0.127 3.873 7 N -0.676 5.676 8 C 0.194 3.806 9 H 0.003 0.997 10 C -0.127 4.127 11 C -0.617 4.617 12 H 0.020 0.980 13 C -0.008 4.008 14 N -0.927 5.927 15 Si 1.079 2.921 16 H -0.285 1.285 17 H -0.267 1.267 18 H -0.245 1.245 19 N -0.538 5.538 20 C 0.130 3.870 21 H 0.091 0.909 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.198 0.802 25 H 0.094 0.906 26 H 0.049 0.951 27 H 0.330 0.670 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.044 0.956 31 H 0.254 0.746 32 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.460 2.172 -12.465 22.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.188 4.188 3 C -0.036 4.036 4 N -0.238 5.238 5 C 0.034 3.966 6 C -0.003 4.003 7 N -0.307 5.307 8 C 0.085 3.915 9 H 0.021 0.979 10 C -0.185 4.185 11 C -0.655 4.655 12 H 0.038 0.962 13 C -0.209 4.209 14 N -0.561 5.561 15 Si 0.900 3.100 16 H -0.211 1.211 17 H -0.192 1.192 18 H -0.169 1.169 19 N -0.253 5.253 20 C -0.036 4.036 21 H 0.110 0.890 22 H 0.103 0.897 23 H 0.104 0.896 24 H 0.214 0.786 25 H 0.112 0.888 26 H 0.067 0.933 27 H 0.147 0.853 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -15.927 2.559 -12.795 20.590 hybrid contribution -2.187 -0.728 0.949 2.493 sum -18.114 1.830 -11.845 21.721 Atomic orbital electron populations 1.20735 0.85862 1.04832 1.04125 1.22137 1.01158 0.94501 1.01038 1.23842 0.88759 1.00265 0.90685 1.68222 1.11618 1.30501 1.13499 1.22920 0.97448 0.83975 0.92269 1.20625 0.85977 1.01906 0.91840 1.60550 1.09898 1.49323 1.10972 1.19323 0.83934 0.93573 0.94719 0.97942 1.21939 0.99451 0.97532 0.99576 1.22185 0.94205 1.46974 1.02144 0.96155 1.27131 0.98945 0.92072 1.02704 1.70968 1.38110 1.47320 0.99696 0.83612 0.74154 0.79237 0.73022 1.21101 1.19244 1.16946 1.68227 1.11973 1.30672 1.14383 1.23789 0.88647 1.00300 0.90819 0.89012 0.89656 0.89581 0.78575 0.88785 0.93257 0.85312 0.93085 0.94421 0.93720 0.93718 0.78670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 10.06 71.23 0.72 -0.14 16 2 C -0.18 -3.43 5.91 -19.69 -0.12 -3.54 16 3 C 0.13 2.96 11.01 84.71 0.93 3.89 16 4 N -0.52 -16.94 10.33 -187.85 -1.94 -18.88 16 5 C 0.30 10.57 7.15 138.75 0.99 11.57 16 6 C 0.13 4.83 5.92 85.56 0.51 5.34 16 7 N -0.68 -30.61 6.29 -499.46 -3.14 -33.75 16 8 C 0.19 9.55 2.20 44.17 0.10 9.65 16 9 H 0.00 0.15 6.37 -2.39 -0.02 0.13 16 10 C -0.13 -5.79 9.09 71.98 0.65 -5.14 16 11 C -0.62 -36.27 8.77 25.60 0.22 -36.04 16 12 H 0.02 1.32 7.92 -2.91 -0.02 1.29 16 13 C -0.01 -0.50 5.19 84.66 0.44 -0.06 16 14 N -0.93 -58.75 13.70 21.45 0.29 -58.46 16 15 Si 1.08 50.31 26.45 68.60 1.81 52.13 16 16 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 18 H -0.25 -10.21 6.15 99.48 0.61 -9.60 16 19 N -0.54 -17.35 10.33 -187.84 -1.94 -19.29 16 20 C 0.13 2.96 11.01 84.70 0.93 3.90 16 21 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 22 H 0.08 0.57 8.10 -2.39 -0.02 0.55 16 23 H 0.09 0.56 8.10 -2.39 -0.02 0.54 16 24 H 0.20 2.91 8.06 -2.92 -0.02 2.88 16 25 H 0.09 3.42 7.58 -2.39 -0.02 3.40 16 26 H 0.05 1.84 8.06 -2.39 -0.02 1.82 16 27 H 0.33 15.75 8.25 -89.70 -0.74 15.01 16 28 H 0.05 1.99 7.64 -2.39 -0.02 1.97 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.04 2.05 5.48 -2.39 -0.01 2.04 16 31 H 0.25 16.41 8.73 -92.71 -0.81 15.60 16 32 H 0.20 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -72.22 272.41 0.71 -71.51 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.25 Total: 17.31 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 5.38 Total: -10.58 kcal Atomic # 7 Polarization: -123.65 SS G_CDS: -6.73 Total: -130.38 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 1.81 Total: 52.13 kcal Total: -72.22 0.71 -71.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868658.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.343 kcal (2) G-P(sol) polarization free energy of solvation -72.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds