Wall clock time and date at job start Sun Mar 29 2020 22:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46742 * 2 1 4 4 C 1.50698 * 109.46768 * 240.00689 * 2 1 3 5 5 H 1.08000 * 119.99445 * 245.53080 * 4 2 1 6 6 C 1.37875 * 120.00318 * 65.53666 * 4 2 1 7 7 N 1.31507 * 119.99876 * 9.30689 * 6 4 2 8 8 Si 1.86806 * 119.99819 * 189.30512 * 6 4 2 9 9 H 1.48499 * 109.46829 * 94.99480 * 8 6 4 10 10 H 1.48498 * 109.47067 * 214.99180 * 8 6 4 11 11 H 1.48498 * 109.47166 * 334.99108 * 8 6 4 12 12 N 1.46890 * 109.47120 * 120.00351 * 2 1 3 13 13 C 1.46898 * 111.00186 * 270.62234 * 12 2 1 14 14 H 1.08997 * 109.47071 * 336.66435 * 13 12 2 15 15 C 1.53004 * 109.47504 * 96.66885 * 13 12 2 16 16 C 1.50703 * 109.47300 * 216.67056 * 13 12 2 17 17 C 1.38393 * 120.00399 * 154.98052 * 16 13 12 18 18 N 1.32117 * 119.99597 * 180.02562 * 17 16 13 19 19 C 1.32160 * 120.00509 * 359.72905 * 18 17 16 20 20 C 1.38344 * 119.99711 * 0.52242 * 19 18 17 21 21 N 1.32128 * 119.99788 * 334.99242 * 16 13 12 22 22 H 1.09002 * 109.47408 * 301.85700 * 1 2 3 23 23 H 1.09005 * 109.47521 * 61.85524 * 1 2 3 24 24 H 1.08998 * 109.47216 * 181.85607 * 1 2 3 25 25 H 0.97004 * 119.99993 * 179.97438 * 7 6 4 26 26 H 1.00902 * 111.00197 * 34.57846 * 12 2 1 27 27 H 1.08996 * 109.47113 * 61.71874 * 15 13 12 28 28 H 1.08997 * 109.47208 * 181.72714 * 15 13 12 29 29 H 1.09002 * 109.46596 * 301.72316 * 15 13 12 30 30 H 1.08001 * 119.99964 * 0.03831 * 17 16 13 31 31 H 1.08001 * 120.00438 * 180.27376 * 19 18 17 32 32 H 1.07998 * 119.99867 * 179.75558 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.5774 -1.6375 -1.1340 6 6 1.7958 -0.1763 -2.4795 7 7 1.2973 1.0353 -2.5930 8 14 2.1837 -1.1740 -4.0105 9 1 0.9573 -1.8755 -4.4679 10 1 2.6646 -0.2672 -5.0836 11 1 3.2373 -2.1724 -3.6969 12 7 2.0196 -0.6925 1.1993 13 6 2.1811 0.2443 2.3192 14 1 2.3077 1.2552 1.9318 15 6 0.9392 0.1918 3.2113 16 6 3.3951 -0.1404 3.1250 17 6 4.0578 0.8142 3.8766 18 7 5.1223 0.4768 4.5826 19 6 5.5512 -0.7732 4.5753 20 6 4.8918 -1.7263 3.8199 21 7 3.8269 -1.3891 3.1138 22 1 -0.3634 0.5424 0.8729 23 1 -0.3634 0.4848 -0.9062 24 1 -0.3633 -1.0271 0.0333 25 1 1.1314 1.4111 -3.4718 26 1 1.4089 -1.4553 1.4511 27 1 0.8298 -0.8115 3.6231 28 1 1.0457 0.9090 4.0251 29 1 0.0571 0.4404 2.6211 30 1 3.7046 1.8348 3.8862 31 1 6.4189 -1.0499 5.1560 32 1 5.2447 -2.7470 3.8109 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602870579.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:57 Heat of formation + Delta-G solvation = 47.385101 kcal Electronic energy + Delta-G solvation = -14785.417618 eV Core-core repulsion = 12360.130370 eV Total energy + Delta-G solvation = -2425.287248 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.79706 -36.84140 -33.99887 -33.18539 -31.41312 -29.51472 -27.17899 -25.04249 -24.63480 -24.07538 -20.90611 -20.28268 -17.19497 -16.86458 -16.49275 -15.48186 -14.78344 -14.60311 -13.98140 -13.76058 -13.47734 -12.79983 -12.49079 -12.18378 -11.86667 -11.55690 -11.25084 -11.02551 -10.94700 -10.88684 -10.77313 -10.40214 -10.18922 -9.82185 -9.08542 -8.94363 -8.67594 -8.30753 -7.24136 -5.98498 -3.97094 1.02439 1.44250 3.34347 3.41230 3.46312 3.96328 4.31988 4.45490 4.52184 4.69083 4.97322 5.22633 5.33797 5.45566 5.51107 5.60465 5.63434 5.70049 6.08362 6.14512 6.30556 6.60532 6.70823 6.78979 7.01323 7.29051 7.54811 7.61306 7.92509 8.10134 8.25366 8.58739 8.63024 9.10314 9.66504 11.10713 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035706 B = 0.007139 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.002159 B = 3921.328390 C = 4325.509151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.209 3.791 3 H 0.039 0.961 4 C -0.494 4.494 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.892 3.108 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.663 5.663 13 C 0.130 3.870 14 H 0.092 0.908 15 C -0.173 4.173 16 C 0.113 3.887 17 C 0.041 3.959 18 N -0.442 5.442 19 C 0.024 3.976 20 C 0.048 3.952 21 N -0.405 5.405 22 H 0.014 0.986 23 H 0.070 0.930 24 H 0.031 0.969 25 H 0.259 0.741 26 H 0.333 0.667 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.164 0.836 31 H 0.162 0.838 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.744 -1.830 12.601 13.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.102 3.898 3 H 0.057 0.943 4 C -0.532 4.532 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.537 5.537 8 Si 0.720 3.280 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.292 5.292 13 C 0.017 3.983 14 H 0.110 0.890 15 C -0.233 4.233 16 C -0.028 4.028 17 C -0.120 4.120 18 N -0.157 5.157 19 C -0.136 4.136 20 C -0.112 4.112 21 N -0.119 5.119 22 H 0.033 0.967 23 H 0.089 0.911 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.151 0.849 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.181 0.819 31 H 0.179 0.821 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.372 -1.674 12.248 12.813 hybrid contribution -0.659 -0.330 -0.684 1.006 sum 2.713 -2.005 11.564 12.046 Atomic orbital electron populations 1.22490 1.00956 0.98904 1.00065 1.19333 0.89235 0.94598 0.86665 0.94308 1.21150 1.34281 1.08177 0.89626 0.91894 1.24935 0.95697 0.94764 0.98978 1.69959 1.46009 1.14131 1.23591 0.86570 0.78449 0.80128 0.82805 1.20865 1.21478 1.19861 1.60584 1.55601 1.10151 1.02828 1.20471 0.88962 0.97722 0.91137 0.89015 1.22568 0.98720 1.01854 1.00112 1.22647 0.96924 0.89628 0.93631 1.23509 0.92555 1.01250 0.94643 1.68369 1.11252 1.18787 1.17282 1.23619 1.00720 0.89878 0.99371 1.23840 0.92773 1.01284 0.93276 1.68410 1.10679 1.18750 1.14108 0.96720 0.91113 0.94995 0.93133 0.84950 0.92523 0.92830 0.90978 0.81889 0.82104 0.81949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 8.90 37.16 0.33 -3.41 16 2 C 0.21 5.12 2.45 -68.87 -0.17 4.95 16 3 H 0.04 1.05 7.19 -51.93 -0.37 0.67 16 4 C -0.49 -13.72 8.76 -34.44 -0.30 -14.02 16 5 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 6 C 0.06 1.59 5.19 -17.82 -0.09 1.50 16 7 N -0.90 -25.81 12.15 55.43 0.67 -25.13 16 8 Si 0.89 21.71 29.55 -169.99 -5.02 16.69 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.66 -13.91 5.63 -102.18 -0.58 -14.48 16 13 C 0.13 2.25 2.92 -68.86 -0.20 2.05 16 14 H 0.09 1.63 7.16 -51.93 -0.37 1.25 16 15 C -0.17 -2.49 9.03 37.16 0.34 -2.16 16 16 C 0.11 1.89 5.89 -82.41 -0.49 1.40 16 17 C 0.04 0.61 10.90 -17.37 -0.19 0.42 16 18 N -0.44 -6.50 10.50 -13.06 -0.14 -6.63 16 19 C 0.02 0.30 11.22 -17.37 -0.19 0.10 16 20 C 0.05 0.65 11.22 -17.37 -0.20 0.46 16 21 N -0.40 -6.92 9.90 -9.28 -0.09 -7.01 16 22 H 0.01 0.28 5.95 -51.93 -0.31 -0.03 16 23 H 0.07 1.80 6.86 -51.93 -0.36 1.44 16 24 H 0.03 0.69 8.09 -51.93 -0.42 0.27 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.33 6.74 7.95 -39.29 -0.31 6.43 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.07 5.85 -51.93 -0.30 0.77 16 30 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 31 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 271.20 15.07 4.09 4.09 Total: -1.00 -30.71 271.20 -6.34 -37.04 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -4.11 Total: 4.16 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -1.16 Total: -8.71 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.13 Total: -53.26 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.71 -6.34 -37.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870579.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.426 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds