Wall clock time and date at job start Sun Mar 29 2020 22:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46742 * 2 1 4 4 C 1.50698 * 109.46768 * 240.00689 * 2 1 3 5 5 H 1.08000 * 119.99445 * 245.53080 * 4 2 1 6 6 C 1.37875 * 120.00318 * 65.53666 * 4 2 1 7 7 N 1.31507 * 119.99876 * 9.30689 * 6 4 2 8 8 Si 1.86806 * 119.99819 * 189.30512 * 6 4 2 9 9 H 1.48499 * 109.46829 * 94.99480 * 8 6 4 10 10 H 1.48498 * 109.47067 * 214.99180 * 8 6 4 11 11 H 1.48498 * 109.47166 * 334.99108 * 8 6 4 12 12 N 1.46890 * 109.47120 * 120.00351 * 2 1 3 13 13 C 1.46898 * 111.00186 * 270.62234 * 12 2 1 14 14 H 1.08997 * 109.47071 * 336.66435 * 13 12 2 15 15 C 1.53004 * 109.47504 * 96.66885 * 13 12 2 16 16 C 1.50703 * 109.47300 * 216.67056 * 13 12 2 17 17 C 1.38393 * 120.00399 * 154.98052 * 16 13 12 18 18 N 1.32117 * 119.99597 * 180.02562 * 17 16 13 19 19 C 1.32160 * 120.00509 * 359.72905 * 18 17 16 20 20 C 1.38344 * 119.99711 * 0.52242 * 19 18 17 21 21 N 1.32128 * 119.99788 * 334.99242 * 16 13 12 22 22 H 1.09002 * 109.47408 * 301.85700 * 1 2 3 23 23 H 1.09005 * 109.47521 * 61.85524 * 1 2 3 24 24 H 1.08998 * 109.47216 * 181.85607 * 1 2 3 25 25 H 0.97004 * 119.99993 * 179.97438 * 7 6 4 26 26 H 1.00902 * 111.00197 * 34.57846 * 12 2 1 27 27 H 1.08996 * 109.47113 * 61.71874 * 15 13 12 28 28 H 1.08997 * 109.47208 * 181.72714 * 15 13 12 29 29 H 1.09002 * 109.46596 * 301.72316 * 15 13 12 30 30 H 1.08001 * 119.99964 * 0.03831 * 17 16 13 31 31 H 1.08001 * 120.00438 * 180.27376 * 19 18 17 32 32 H 1.07998 * 119.99867 * 179.75558 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.5774 -1.6375 -1.1340 6 6 1.7958 -0.1763 -2.4795 7 7 1.2973 1.0353 -2.5930 8 14 2.1837 -1.1740 -4.0105 9 1 0.9573 -1.8755 -4.4679 10 1 2.6646 -0.2672 -5.0836 11 1 3.2373 -2.1724 -3.6969 12 7 2.0196 -0.6925 1.1993 13 6 2.1811 0.2443 2.3192 14 1 2.3077 1.2552 1.9318 15 6 0.9392 0.1918 3.2113 16 6 3.3951 -0.1404 3.1250 17 6 4.0578 0.8142 3.8766 18 7 5.1223 0.4768 4.5826 19 6 5.5512 -0.7732 4.5753 20 6 4.8918 -1.7263 3.8199 21 7 3.8269 -1.3891 3.1138 22 1 -0.3634 0.5424 0.8729 23 1 -0.3634 0.4848 -0.9062 24 1 -0.3633 -1.0271 0.0333 25 1 1.1314 1.4111 -3.4718 26 1 1.4089 -1.4553 1.4511 27 1 0.8298 -0.8115 3.6231 28 1 1.0457 0.9090 4.0251 29 1 0.0571 0.4404 2.6211 30 1 3.7046 1.8348 3.8862 31 1 6.4189 -1.0499 5.1560 32 1 5.2447 -2.7470 3.8109 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602870579.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:57 Heat of formation + Delta-G solvation = 25.326654 kcal Electronic energy + Delta-G solvation = -14786.374144 eV Core-core repulsion = 12360.130370 eV Total energy + Delta-G solvation = -2426.243774 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.91461 -38.40931 -35.47266 -34.67777 -33.05014 -30.88819 -28.76894 -27.10784 -25.81178 -25.20447 -22.40004 -22.00911 -18.56650 -18.34094 -17.72084 -17.02234 -16.55231 -15.89675 -15.38129 -15.28638 -14.80054 -14.34249 -13.90830 -13.77930 -13.42415 -13.05015 -12.85104 -12.78613 -12.42762 -12.37280 -12.20337 -12.15349 -11.96303 -11.73991 -10.99993 -10.45292 -10.04691 -9.85338 -8.89986 -8.10680 -6.16928 -0.05503 0.32527 1.41141 1.42359 1.53265 2.44616 2.86018 3.18718 3.25819 3.39325 3.52049 3.84760 4.03771 4.22660 4.32980 4.49337 4.51812 4.65383 4.71512 4.79312 4.88577 5.01732 5.10434 5.22894 5.43906 5.56226 5.70217 5.79203 6.25980 6.45731 6.71884 6.88050 6.98406 7.04436 7.51334 8.96633 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035706 B = 0.007139 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.002159 B = 3921.328390 C = 4325.509151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.217 3.783 3 H 0.008 0.992 4 C -0.514 4.514 5 H 0.048 0.952 6 C 0.012 3.988 7 N -0.923 5.923 8 Si 0.952 3.048 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.670 5.670 13 C 0.130 3.870 14 H 0.080 0.920 15 C -0.162 4.162 16 C 0.091 3.909 17 C 0.038 3.962 18 N -0.458 5.458 19 C 0.035 3.965 20 C 0.044 3.956 21 N -0.441 5.441 22 H 0.042 0.958 23 H 0.040 0.960 24 H 0.037 0.963 25 H 0.261 0.739 26 H 0.335 0.665 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.182 0.818 31 H 0.203 0.797 32 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.427 -2.548 13.748 14.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.108 3.892 3 H 0.026 0.974 4 C -0.552 4.552 5 H 0.067 0.933 6 C -0.186 4.186 7 N -0.563 5.563 8 Si 0.778 3.222 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.300 5.300 13 C 0.018 3.982 14 H 0.098 0.902 15 C -0.221 4.221 16 C -0.050 4.050 17 C -0.122 4.122 18 N -0.173 5.173 19 C -0.124 4.124 20 C -0.117 4.117 21 N -0.156 5.156 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.153 0.847 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.199 0.801 31 H 0.220 0.780 32 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 4.041 -2.379 13.408 14.205 hybrid contribution -0.766 -0.142 -0.942 1.223 sum 3.275 -2.521 12.466 13.133 Atomic orbital electron populations 1.22291 0.99640 0.99281 0.99830 1.19052 0.90090 0.92683 0.87337 0.97416 1.21455 1.34437 1.07897 0.91442 0.93342 1.25643 0.95675 0.95623 1.01685 1.70061 1.46763 1.15249 1.24217 0.85632 0.78403 0.78722 0.79394 1.19973 1.21058 1.19840 1.60408 1.55452 1.10875 1.03250 1.20460 0.91005 0.96207 0.90562 0.90163 1.22424 0.96797 1.02711 1.00123 1.22470 0.97299 0.90312 0.94916 1.23716 0.92476 1.01732 0.94236 1.68463 1.11270 1.19939 1.17588 1.24290 1.00989 0.88853 0.98306 1.24408 0.91751 1.03056 0.92461 1.68316 1.12471 1.19233 1.15588 0.93910 0.94065 0.94422 0.93042 0.84663 0.92343 0.90343 0.91551 0.80104 0.78028 0.78824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.90 8.90 71.98 0.64 -6.26 16 2 C 0.22 10.83 2.45 44.17 0.11 10.94 16 3 H 0.01 0.44 7.19 -2.39 -0.02 0.42 16 4 C -0.51 -29.07 8.76 25.60 0.22 -28.84 16 5 H 0.05 2.82 7.83 -2.91 -0.02 2.80 16 6 C 0.01 0.68 5.19 84.66 0.44 1.12 16 7 N -0.92 -53.86 12.15 21.45 0.26 -53.60 16 8 Si 0.95 44.81 29.55 68.60 2.03 46.84 16 9 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 12 N -0.67 -28.41 5.63 -477.18 -2.69 -31.09 16 13 C 0.13 4.48 2.92 44.17 0.13 4.61 16 14 H 0.08 2.90 7.16 -2.39 -0.02 2.88 16 15 C -0.16 -4.45 9.03 71.98 0.65 -3.80 16 16 C 0.09 2.95 5.89 42.55 0.25 3.20 16 17 C 0.04 1.07 10.90 84.69 0.92 1.99 16 18 N -0.46 -12.45 10.50 -195.22 -2.05 -14.50 16 19 C 0.04 0.79 11.22 84.67 0.95 1.74 16 20 C 0.04 1.08 11.22 84.67 0.95 2.03 16 21 N -0.44 -14.62 9.90 -183.29 -1.81 -16.43 16 22 H 0.04 1.67 5.95 -2.39 -0.01 1.65 16 23 H 0.04 2.11 6.86 -2.38 -0.02 2.09 16 24 H 0.04 1.63 8.09 -2.39 -0.02 1.61 16 25 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 26 H 0.34 13.61 7.95 -89.69 -0.71 12.90 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.07 1.88 5.85 -2.39 -0.01 1.87 16 30 H 0.18 4.20 8.06 -2.91 -0.02 4.18 16 31 H 0.20 2.67 8.06 -2.91 -0.02 2.64 16 32 H 0.19 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -66.34 271.20 1.41 -64.93 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.41 Total: 17.13 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 5.27 Total: -13.27 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -6.29 Total: -115.63 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -66.34 1.41 -64.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870579.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.261 kcal (2) G-P(sol) polarization free energy of solvation -66.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds