Wall clock time and date at job start Sun Mar 29 2020 22:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47388 * 2 1 4 4 N 1.46901 * 109.46925 * 120.00347 * 2 1 3 5 5 C 1.46895 * 111.00293 * 273.07047 * 4 2 1 6 6 H 1.09003 * 109.47178 * 343.49927 * 5 4 2 7 7 C 1.53002 * 109.46915 * 103.49379 * 5 4 2 8 8 C 1.50699 * 109.47473 * 223.49468 * 5 4 2 9 9 H 1.07993 * 119.99718 * 354.86144 * 8 5 4 10 10 C 1.37878 * 119.99620 * 174.85479 * 8 5 4 11 11 N 1.31516 * 119.99537 * 162.53942 * 10 8 5 12 12 Si 1.86801 * 120.00563 * 342.53939 * 10 8 5 13 13 H 1.48495 * 109.47198 * 180.02562 * 12 10 8 14 14 H 1.48502 * 109.47063 * 300.00256 * 12 10 8 15 15 H 1.48503 * 109.46781 * 59.99978 * 12 10 8 16 16 C 1.50706 * 109.47001 * 240.00184 * 2 1 3 17 17 C 1.38386 * 120.00013 * 84.72382 * 16 2 1 18 18 N 1.32122 * 119.99698 * 179.78129 * 17 16 2 19 19 C 1.32154 * 119.99723 * 0.49612 * 18 17 16 20 20 C 1.38342 * 120.00694 * 359.73858 * 19 18 17 21 21 N 1.32120 * 119.99802 * 265.00288 * 16 2 1 22 22 H 1.09002 * 109.46717 * 306.77682 * 1 2 3 23 23 H 1.08997 * 109.46843 * 66.77123 * 1 2 3 24 24 H 1.08999 * 109.47378 * 186.77608 * 1 2 3 25 25 H 1.00901 * 110.99543 * 149.11746 * 4 2 1 26 26 H 1.09007 * 109.47108 * 172.46693 * 7 5 4 27 27 H 1.09008 * 109.47242 * 292.46135 * 7 5 4 28 28 H 1.08997 * 109.47057 * 52.46283 * 7 5 4 29 29 H 0.97002 * 119.99893 * 354.90789 * 11 10 8 30 30 H 1.08004 * 119.99965 * 0.03110 * 17 16 2 31 31 H 1.08002 * 119.99614 * 179.71173 * 19 18 17 32 32 H 1.08001 * 120.00150 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.1259 0.2328 2.3353 6 1 2.1025 1.2598 1.9706 7 6 0.9530 0.0042 3.2908 8 6 3.4222 -0.0123 3.0635 9 1 4.0604 -0.8322 2.7689 10 6 3.7935 0.8102 4.1059 11 7 4.7186 0.4189 4.9549 12 14 2.9827 2.4804 4.3124 13 1 3.5546 3.1649 5.4996 14 1 3.2288 3.3032 3.1009 15 1 1.5206 2.3009 4.5003 16 6 2.0323 -0.7104 -1.2305 17 6 2.1591 -0.0214 -2.4240 18 7 2.6036 -0.6432 -3.5017 19 6 2.9178 -1.9255 -3.4423 20 6 2.7865 -2.6155 -2.2505 21 7 2.3465 -1.9923 -1.1712 22 1 -0.3633 0.6153 0.8232 23 1 -0.3633 0.4053 -0.9443 24 1 -0.3634 -1.0205 0.1213 25 1 2.9024 -1.1470 1.0195 26 1 1.1014 0.5933 4.1958 27 1 0.0251 0.3094 2.8067 28 1 0.8967 -1.0529 3.5504 29 1 5.0868 -0.4763 4.8924 30 1 1.8985 1.0255 -2.4734 31 1 3.2767 -2.4349 -4.3244 32 1 3.0430 -3.6635 -2.2021 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602870581.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:00 Heat of formation + Delta-G solvation = 48.032988 kcal Electronic energy + Delta-G solvation = -14852.300494 eV Core-core repulsion = 12427.041341 eV Total energy + Delta-G solvation = -2425.259153 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.03989 -36.84862 -34.18662 -33.31608 -31.60967 -29.76861 -27.89808 -24.79856 -24.52899 -24.22657 -20.93948 -19.65702 -17.75068 -17.35606 -16.90154 -15.93394 -14.93849 -14.51881 -14.37415 -13.87317 -13.38246 -13.02420 -12.38690 -12.23898 -11.88898 -11.81158 -11.48728 -11.35674 -11.11999 -11.02937 -10.65666 -10.37484 -9.88610 -9.63866 -9.16943 -8.96632 -8.86189 -8.29987 -7.54725 -6.44249 -4.09884 0.80907 1.21266 3.38321 3.40379 3.59169 3.75321 4.09397 4.28358 4.47376 4.49120 4.79290 5.02821 5.23780 5.26659 5.40073 5.48644 5.64360 5.71152 6.02576 6.17858 6.38448 6.46389 6.53859 6.78123 6.90471 6.94916 7.32230 7.52537 7.72884 7.88328 8.11802 8.37701 8.52928 8.92772 9.58543 10.90905 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038984 B = 0.007344 C = 0.007004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.079116 B = 3811.830090 C = 3996.811605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.132 3.868 3 H 0.060 0.940 4 N -0.664 5.664 5 C 0.185 3.815 6 H 0.003 0.997 7 C -0.135 4.135 8 C -0.613 4.613 9 H 0.058 0.942 10 C 0.035 3.965 11 N -0.903 5.903 12 Si 1.041 2.959 13 H -0.285 1.285 14 H -0.286 1.286 15 H -0.271 1.271 16 C 0.092 3.908 17 C 0.048 3.952 18 N -0.440 5.440 19 C 0.031 3.969 20 C 0.052 3.948 21 N -0.415 5.415 22 H 0.066 0.934 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.346 0.654 26 H 0.049 0.951 27 H 0.021 0.979 28 H 0.048 0.952 29 H 0.268 0.732 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.540 -1.625 -13.958 15.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.020 3.980 3 H 0.078 0.922 4 N -0.297 5.297 5 C 0.076 3.924 6 H 0.020 0.980 7 C -0.193 4.193 8 C -0.651 4.651 9 H 0.077 0.923 10 C -0.171 4.171 11 N -0.537 5.537 12 Si 0.869 3.131 13 H -0.211 1.211 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.049 4.049 17 C -0.112 4.112 18 N -0.154 5.154 19 C -0.129 4.129 20 C -0.108 4.108 21 N -0.130 5.130 22 H 0.085 0.915 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.166 0.834 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.184 0.816 31 H 0.183 0.817 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.102 -0.484 -12.851 14.691 hybrid contribution 0.881 -1.052 -1.237 1.848 sum -6.221 -1.536 -14.088 15.477 Atomic orbital electron populations 1.21826 0.93607 1.02837 1.00798 1.20588 0.96037 0.94800 0.86584 0.92193 1.60627 1.35483 1.31026 1.02550 1.19549 0.95171 0.89539 0.88182 0.97967 1.22168 0.96747 1.01202 0.99213 1.22293 1.05516 1.17814 1.19515 0.92340 1.25719 0.96086 1.03557 0.91735 1.70831 1.27855 1.21078 1.33919 0.84119 0.76554 0.75960 0.76418 1.21126 1.21212 1.19755 1.22670 0.94373 0.91143 0.96675 1.23554 0.97022 1.01597 0.89072 1.68413 1.07539 1.09562 1.29893 1.23695 0.98501 0.91416 0.99285 1.23857 0.95837 1.01720 0.89383 1.68360 1.06549 1.08736 1.29330 0.91529 0.93419 0.91804 0.83394 0.93242 0.96003 0.93303 0.92165 0.81590 0.81730 0.81543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.40 37.16 0.35 -1.64 16 2 C 0.13 2.27 2.85 -68.86 -0.20 2.08 16 3 H 0.06 1.03 7.29 -51.93 -0.38 0.65 16 4 N -0.66 -14.07 5.98 -102.17 -0.61 -14.68 16 5 C 0.18 4.39 2.25 -68.87 -0.16 4.24 16 6 H 0.00 0.07 5.83 -51.93 -0.30 -0.24 16 7 C -0.14 -3.05 9.18 37.16 0.34 -2.71 16 8 C -0.61 -17.25 8.85 -34.44 -0.30 -17.55 16 9 H 0.06 1.78 7.66 -52.49 -0.40 1.38 16 10 C 0.03 1.00 5.28 -17.82 -0.09 0.91 16 11 N -0.90 -27.76 13.70 55.43 0.76 -27.00 16 12 Si 1.04 25.00 26.28 -169.99 -4.47 20.53 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.27 -6.01 5.75 56.52 0.33 -5.69 16 16 C 0.09 1.47 5.70 -82.41 -0.47 1.00 16 17 C 0.05 0.67 10.90 -17.37 -0.19 0.48 16 18 N -0.44 -6.03 10.50 -13.06 -0.14 -6.17 16 19 C 0.03 0.35 11.22 -17.37 -0.20 0.16 16 20 C 0.05 0.65 11.22 -17.37 -0.20 0.46 16 21 N -0.41 -6.73 9.42 -9.29 -0.09 -6.81 16 22 H 0.07 1.01 6.81 -51.93 -0.35 0.66 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.35 7.85 6.95 -39.29 -0.27 7.58 16 26 H 0.05 1.15 4.83 -51.93 -0.25 0.90 16 27 H 0.02 0.42 6.79 -51.92 -0.35 0.07 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.27 8.25 8.73 -40.82 -0.36 7.90 16 30 H 0.17 1.88 8.06 -52.48 -0.42 1.46 16 31 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 266.17 15.07 4.01 4.01 Total: -1.00 -31.55 266.17 -5.72 -37.26 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -4.08 Total: 5.44 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -1.11 Total: -12.58 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.08 Total: -54.67 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -4.47 Total: 20.53 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.55 -5.72 -37.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870581.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.297 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds