Wall clock time and date at job start Sun Mar 29 2020 22:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47388 * 2 1 4 4 N 1.46901 * 109.46925 * 120.00347 * 2 1 3 5 5 C 1.46895 * 111.00293 * 273.07047 * 4 2 1 6 6 H 1.09003 * 109.47178 * 343.49927 * 5 4 2 7 7 C 1.53002 * 109.46915 * 103.49379 * 5 4 2 8 8 C 1.50699 * 109.47473 * 223.49468 * 5 4 2 9 9 H 1.07993 * 119.99718 * 354.86144 * 8 5 4 10 10 C 1.37878 * 119.99620 * 174.85479 * 8 5 4 11 11 N 1.31516 * 119.99537 * 162.53942 * 10 8 5 12 12 Si 1.86801 * 120.00563 * 342.53939 * 10 8 5 13 13 H 1.48495 * 109.47198 * 180.02562 * 12 10 8 14 14 H 1.48502 * 109.47063 * 300.00256 * 12 10 8 15 15 H 1.48503 * 109.46781 * 59.99978 * 12 10 8 16 16 C 1.50706 * 109.47001 * 240.00184 * 2 1 3 17 17 C 1.38386 * 120.00013 * 84.72382 * 16 2 1 18 18 N 1.32122 * 119.99698 * 179.78129 * 17 16 2 19 19 C 1.32154 * 119.99723 * 0.49612 * 18 17 16 20 20 C 1.38342 * 120.00694 * 359.73858 * 19 18 17 21 21 N 1.32120 * 119.99802 * 265.00288 * 16 2 1 22 22 H 1.09002 * 109.46717 * 306.77682 * 1 2 3 23 23 H 1.08997 * 109.46843 * 66.77123 * 1 2 3 24 24 H 1.08999 * 109.47378 * 186.77608 * 1 2 3 25 25 H 1.00901 * 110.99543 * 149.11746 * 4 2 1 26 26 H 1.09007 * 109.47108 * 172.46693 * 7 5 4 27 27 H 1.09008 * 109.47242 * 292.46135 * 7 5 4 28 28 H 1.08997 * 109.47057 * 52.46283 * 7 5 4 29 29 H 0.97002 * 119.99893 * 354.90789 * 11 10 8 30 30 H 1.08004 * 119.99965 * 0.03110 * 17 16 2 31 31 H 1.08002 * 119.99614 * 179.71173 * 19 18 17 32 32 H 1.08001 * 120.00150 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.1259 0.2328 2.3353 6 1 2.1025 1.2598 1.9706 7 6 0.9530 0.0042 3.2908 8 6 3.4222 -0.0123 3.0635 9 1 4.0604 -0.8322 2.7689 10 6 3.7935 0.8102 4.1059 11 7 4.7186 0.4189 4.9549 12 14 2.9827 2.4804 4.3124 13 1 3.5546 3.1649 5.4996 14 1 3.2288 3.3032 3.1009 15 1 1.5206 2.3009 4.5003 16 6 2.0323 -0.7104 -1.2305 17 6 2.1591 -0.0214 -2.4240 18 7 2.6036 -0.6432 -3.5017 19 6 2.9178 -1.9255 -3.4423 20 6 2.7865 -2.6155 -2.2505 21 7 2.3465 -1.9923 -1.1712 22 1 -0.3633 0.6153 0.8232 23 1 -0.3633 0.4053 -0.9443 24 1 -0.3634 -1.0205 0.1213 25 1 2.9024 -1.1470 1.0195 26 1 1.1014 0.5933 4.1958 27 1 0.0251 0.3094 2.8067 28 1 0.8967 -1.0529 3.5504 29 1 5.0868 -0.4763 4.8924 30 1 1.8985 1.0255 -2.4734 31 1 3.2767 -2.4349 -4.3244 32 1 3.0430 -3.6635 -2.2021 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602870581.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:59 Heat of formation + Delta-G solvation = 23.843264 kcal Electronic energy + Delta-G solvation = -14853.349440 eV Core-core repulsion = 12427.041341 eV Total energy + Delta-G solvation = -2426.308099 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.08402 -38.39665 -35.61477 -34.79207 -33.33857 -31.07595 -29.43673 -26.62069 -25.86104 -25.32971 -22.35665 -21.40196 -19.79917 -18.46308 -17.92338 -17.19154 -16.30152 -16.07875 -15.78698 -15.21405 -15.00450 -14.36692 -14.18644 -13.71926 -13.44050 -13.27601 -13.04572 -12.68590 -12.51973 -12.28585 -12.14543 -12.05052 -11.76537 -11.46746 -10.98345 -10.49888 -10.18936 -10.00637 -9.24983 -8.68977 -6.40099 -0.19240 0.17587 1.46490 1.52723 1.72202 2.49262 2.73676 3.02238 3.06291 3.22949 3.41205 3.72845 3.82605 4.23388 4.36707 4.42649 4.45076 4.56897 4.61320 4.79645 4.87429 5.02487 5.06724 5.14704 5.34995 5.44198 5.68470 5.77113 5.99046 6.22515 6.34581 6.64473 6.75884 6.89292 7.38316 8.59901 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038984 B = 0.007344 C = 0.007004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.079116 B = 3811.830090 C = 3996.811605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.128 3.872 3 H 0.062 0.938 4 N -0.668 5.668 5 C 0.188 3.812 6 H 0.012 0.988 7 C -0.130 4.130 8 C -0.617 4.617 9 H 0.016 0.984 10 C -0.017 4.017 11 N -0.936 5.936 12 Si 1.081 2.919 13 H -0.290 1.290 14 H -0.264 1.264 15 H -0.237 1.237 16 C 0.069 3.931 17 C 0.048 3.952 18 N -0.455 5.455 19 C 0.044 3.956 20 C 0.047 3.953 21 N -0.453 5.453 22 H 0.065 0.935 23 H 0.077 0.923 24 H 0.050 0.950 25 H 0.332 0.668 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.034 0.966 29 H 0.251 0.749 30 H 0.188 0.812 31 H 0.207 0.793 32 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.154 -0.650 -15.956 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.017 3.983 3 H 0.080 0.920 4 N -0.299 5.299 5 C 0.078 3.922 6 H 0.029 0.971 7 C -0.188 4.188 8 C -0.655 4.655 9 H 0.035 0.965 10 C -0.215 4.215 11 N -0.572 5.572 12 Si 0.901 3.099 13 H -0.216 1.216 14 H -0.189 1.189 15 H -0.161 1.161 16 C -0.071 4.071 17 C -0.111 4.111 18 N -0.170 5.170 19 C -0.116 4.116 20 C -0.113 4.113 21 N -0.169 5.169 22 H 0.084 0.916 23 H 0.095 0.905 24 H 0.070 0.930 25 H 0.150 0.850 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.205 0.795 31 H 0.223 0.777 32 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -8.746 0.488 -14.873 17.261 hybrid contribution 1.466 -1.520 -0.747 2.240 sum -7.279 -1.031 -15.620 17.263 Atomic orbital electron populations 1.21763 0.91811 1.02256 1.02424 1.20680 0.97378 0.94606 0.85662 0.92022 1.60615 1.34536 1.30937 1.03859 1.19443 0.93193 0.90450 0.89083 0.97071 1.22069 0.97670 1.00293 0.98776 1.22544 1.07048 1.16160 1.19773 0.96548 1.27242 0.95867 1.07121 0.91277 1.70966 1.29978 1.20363 1.35852 0.83659 0.77628 0.71564 0.77041 1.21628 1.18934 1.16129 1.22481 0.96324 0.91491 0.96810 1.23788 0.96476 1.02456 0.88377 1.68516 1.08134 1.10608 1.29701 1.24360 0.96263 0.90744 1.00236 1.24406 0.95028 1.03052 0.88862 1.68257 1.07748 1.09408 1.31444 0.91562 0.90458 0.93042 0.84977 0.93942 0.92651 0.94695 0.93995 0.79487 0.77680 0.78624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.44 9.40 71.98 0.68 -2.77 16 2 C 0.13 4.25 2.85 44.17 0.13 4.37 16 3 H 0.06 2.01 7.29 -2.39 -0.02 2.00 16 4 N -0.67 -28.27 5.98 -477.15 -2.86 -31.12 16 5 C 0.19 8.82 2.25 44.17 0.10 8.92 16 6 H 0.01 0.53 5.83 -2.39 -0.01 0.52 16 7 C -0.13 -5.65 9.18 71.98 0.66 -4.99 16 8 C -0.62 -35.56 8.85 25.60 0.23 -35.34 16 9 H 0.02 1.05 7.66 -2.91 -0.02 1.03 16 10 C -0.02 -0.96 5.28 84.65 0.45 -0.52 16 11 N -0.94 -59.36 13.70 21.45 0.29 -59.06 16 12 Si 1.08 49.26 26.28 68.60 1.80 51.06 16 13 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 14 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 15 H -0.24 -9.50 5.75 99.48 0.57 -8.93 16 16 C 0.07 2.11 5.70 42.55 0.24 2.35 16 17 C 0.05 1.24 10.90 84.68 0.92 2.17 16 18 N -0.46 -11.31 10.50 -195.22 -2.05 -13.36 16 19 C 0.04 0.88 11.22 84.67 0.95 1.83 16 20 C 0.05 1.08 11.22 84.67 0.95 2.03 16 21 N -0.45 -14.34 9.42 -183.29 -1.73 -16.07 16 22 H 0.07 1.81 6.81 -2.39 -0.02 1.80 16 23 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.33 15.53 6.95 -89.69 -0.62 14.90 16 26 H 0.04 1.88 4.83 -2.38 -0.01 1.87 16 27 H 0.05 2.02 6.79 -2.38 -0.02 2.00 16 28 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.25 16.27 8.73 -92.71 -0.81 15.46 16 30 H 0.19 3.76 8.06 -2.91 -0.02 3.74 16 31 H 0.21 2.30 8.06 -2.91 -0.02 2.27 16 32 H 0.20 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -70.23 266.17 1.10 -69.13 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.33 Total: 21.36 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 5.30 Total: -21.94 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -6.34 Total: -119.61 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 1.80 Total: 51.06 kcal Total: -70.23 1.10 -69.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870581.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.977 kcal (2) G-P(sol) polarization free energy of solvation -70.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds