Wall clock time and date at job start Sun Mar 29 2020 22:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 N 1.46895 * 109.47260 * 239.99238 * 2 1 3 13 13 C 1.46908 * 110.99742 * 85.00495 * 12 2 1 14 14 H 1.09000 * 109.46710 * 324.99787 * 13 12 2 15 15 C 1.52993 * 109.47200 * 84.99552 * 13 12 2 16 16 C 1.50702 * 109.46992 * 205.00064 * 13 12 2 17 17 C 1.38388 * 119.99945 * 154.99890 * 16 13 12 18 18 N 1.32127 * 119.99673 * 179.97438 * 17 16 13 19 19 C 1.32150 * 120.00172 * 359.97438 * 18 17 16 20 20 C 1.38343 * 120.00162 * 0.02562 * 19 18 17 21 21 N 1.32121 * 120.00327 * 334.72136 * 16 13 12 22 22 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 23 23 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 26 26 H 1.00897 * 111.00254 * 321.05548 * 12 2 1 27 27 H 1.09000 * 109.47097 * 60.00472 * 15 13 12 28 28 H 1.09003 * 109.46948 * 179.97438 * 15 13 12 29 29 H 1.08997 * 109.47826 * 300.00468 * 15 13 12 30 30 H 1.08005 * 120.00534 * 359.97438 * 17 16 13 31 31 H 1.07995 * 120.00203 * 180.02562 * 19 18 17 32 32 H 1.07994 * 120.00389 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.6422 -0.5352 4.4055 10 1 1.3588 -0.9384 5.1155 11 1 2.4973 -2.5585 3.7156 12 7 2.0196 -0.6926 -1.1993 13 6 2.0825 0.2224 -2.3469 14 1 1.2577 0.9328 -2.2907 15 6 3.4111 0.9807 -2.3223 16 6 1.9787 -0.5679 -3.6258 17 6 1.5027 0.0366 -4.7761 18 7 1.4122 -0.6562 -5.8974 19 6 1.7766 -1.9262 -5.9208 20 6 2.2524 -2.5306 -4.7709 21 7 2.3472 -1.8364 -3.6503 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.7164 1.1670 3.4843 26 1 1.4495 -1.4980 -1.4099 27 1 4.2360 0.2704 -2.3784 28 1 3.4579 1.6593 -3.1740 29 1 3.4863 1.5523 -1.3973 30 1 1.2053 1.0748 -4.7572 31 1 1.7030 -2.4924 -6.8374 32 1 2.5498 -3.5686 -4.7898 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602870582.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:02 Heat of formation + Delta-G solvation = 26.491353 kcal Electronic energy + Delta-G solvation = -14780.201653 eV Core-core repulsion = 12354.008384 eV Total energy + Delta-G solvation = -2426.193269 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.04319 -38.34346 -35.55223 -34.72023 -33.05780 -30.93337 -28.74535 -27.23193 -25.86870 -25.30282 -22.69939 -21.38033 -18.64147 -18.45196 -17.78798 -17.06357 -16.57604 -16.04895 -15.73013 -15.23960 -14.61609 -14.42661 -13.87145 -13.63590 -13.29678 -13.01641 -12.84371 -12.80344 -12.49373 -12.37346 -12.28472 -12.10120 -12.05100 -11.75374 -11.03603 -10.45993 -10.15793 -9.93915 -8.92143 -8.07923 -6.17830 -0.15098 0.22033 1.43937 1.44385 1.55377 2.45635 2.78056 3.10509 3.20575 3.30446 3.46602 3.78249 3.90444 4.28716 4.41589 4.44912 4.50627 4.61402 4.72692 4.83894 4.89611 4.95408 5.14889 5.32509 5.43328 5.49099 5.70895 5.84052 6.28513 6.37596 6.68746 6.78929 6.95065 6.97567 7.51826 8.97751 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.049800 B = 0.006406 C = 0.006192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.110386 B = 4369.618604 C = 4520.574931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.216 3.784 3 H 0.012 0.988 4 C -0.512 4.512 5 H 0.051 0.949 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.272 1.272 12 N -0.670 5.670 13 C 0.133 3.867 14 H 0.056 0.944 15 C -0.123 4.123 16 C 0.074 3.926 17 C 0.047 3.953 18 N -0.455 5.455 19 C 0.044 3.956 20 C 0.049 3.951 21 N -0.450 5.450 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.064 0.936 25 H 0.261 0.739 26 H 0.331 0.669 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.184 0.816 31 H 0.207 0.793 32 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.152 -3.301 -15.070 15.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.107 3.893 3 H 0.030 0.970 4 C -0.551 4.551 5 H 0.069 0.931 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.785 3.215 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.300 5.300 13 C 0.021 3.979 14 H 0.074 0.926 15 C -0.181 4.181 16 C -0.066 4.066 17 C -0.112 4.112 18 N -0.170 5.170 19 C -0.116 4.116 20 C -0.111 4.111 21 N -0.165 5.165 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.148 0.852 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.201 0.799 31 H 0.224 0.776 32 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 1.748 -3.090 -14.768 15.189 hybrid contribution -0.754 -0.167 0.924 1.204 sum 0.994 -3.257 -13.844 14.257 Atomic orbital electron populations 1.22267 1.00350 0.98899 1.00140 1.19006 0.89680 0.93131 0.87461 0.97027 1.21425 1.30285 1.12274 0.91114 0.93106 1.25675 0.95525 0.95897 1.01721 1.69999 1.38092 1.24202 1.23932 0.85545 0.77987 0.78977 0.79007 1.20314 1.20861 1.19654 1.60658 1.58143 1.08662 1.02581 1.20399 0.98506 0.92888 0.86059 0.92638 1.21680 0.95566 0.99125 1.01733 1.22336 0.95534 0.91937 0.96790 1.23735 0.96947 1.02185 0.88341 1.68517 1.12674 1.08446 1.27325 1.24379 0.94660 0.91533 1.01013 1.24440 0.95651 1.02543 0.88485 1.68281 1.11785 1.07076 1.29345 0.95587 0.95560 0.91749 0.93021 0.85159 0.93244 0.90371 0.93243 0.79884 0.77638 0.78392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.65 8.92 71.98 0.64 -7.01 16 2 C 0.22 11.00 2.38 44.17 0.11 11.11 16 3 H 0.01 0.65 7.11 -2.39 -0.02 0.64 16 4 C -0.51 -29.00 8.84 25.60 0.23 -28.78 16 5 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 6 C 0.01 0.55 5.31 84.66 0.45 1.00 16 7 N -0.92 -53.31 11.33 21.45 0.24 -53.07 16 8 Si 0.96 44.65 29.54 68.60 2.03 46.67 16 9 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 N -0.67 -29.29 5.79 -477.17 -2.76 -32.05 16 13 C 0.13 4.72 2.69 44.17 0.12 4.84 16 14 H 0.06 1.96 7.09 -2.39 -0.02 1.94 16 15 C -0.12 -4.07 9.38 71.98 0.68 -3.40 16 16 C 0.07 2.27 5.70 42.55 0.24 2.51 16 17 C 0.05 1.22 10.90 84.68 0.92 2.14 16 18 N -0.46 -11.12 10.50 -195.23 -2.05 -13.17 16 19 C 0.04 0.85 11.22 84.67 0.95 1.80 16 20 C 0.05 1.08 11.22 84.67 0.95 2.03 16 21 N -0.45 -13.92 9.47 -183.30 -1.74 -15.65 16 22 H 0.03 1.10 7.43 -2.39 -0.02 1.08 16 23 H 0.03 1.23 8.13 -2.39 -0.02 1.21 16 24 H 0.06 3.48 6.08 -2.39 -0.01 3.46 16 25 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 26 H 0.33 14.49 7.61 -89.70 -0.68 13.81 16 27 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 1.82 7.43 -2.39 -0.02 1.81 16 30 H 0.18 3.86 8.06 -2.91 -0.02 3.84 16 31 H 0.21 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.20 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -65.38 271.97 1.44 -63.94 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.43 Total: 17.08 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 5.28 Total: -13.76 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -6.31 Total: -113.94 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -65.38 1.44 -63.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870582.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.435 kcal (2) G-P(sol) polarization free energy of solvation -65.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds