Wall clock time and date at job start Sun Mar 29 2020 22:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47071 * 2 1 4 4 C 1.50706 * 109.46630 * 239.99693 * 2 1 3 5 5 H 1.07997 * 119.99914 * 239.99927 * 4 2 1 6 6 C 1.37871 * 119.99852 * 60.00445 * 4 2 1 7 7 N 1.31512 * 120.00360 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99958 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47392 * 59.99503 * 8 6 4 10 10 H 1.48500 * 109.47506 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47044 * 299.99660 * 8 6 4 12 12 N 1.46897 * 109.46902 * 120.00012 * 2 1 3 13 13 C 1.46897 * 111.00278 * 274.99512 * 12 2 1 14 14 H 1.09003 * 109.47077 * 35.00103 * 13 12 2 15 15 C 1.53002 * 109.47362 * 275.00811 * 13 12 2 16 16 C 1.50702 * 109.47413 * 155.00207 * 13 12 2 17 17 C 1.38387 * 119.99804 * 204.72374 * 16 13 12 18 18 N 1.32128 * 119.99334 * 180.29829 * 17 16 13 19 19 C 1.32154 * 120.00015 * 359.97438 * 18 17 16 20 20 C 1.38337 * 120.00414 * 359.97438 * 19 18 17 21 21 N 1.32124 * 119.99937 * 25.00485 * 16 13 12 22 22 H 1.08999 * 109.46604 * 300.00138 * 1 2 3 23 23 H 1.08999 * 109.46955 * 59.99851 * 1 2 3 24 24 H 1.09000 * 109.47178 * 180.02562 * 1 2 3 25 25 H 0.96996 * 120.00095 * 179.97438 * 7 6 4 26 26 H 1.00899 * 111.00552 * 38.95468 * 12 2 1 27 27 H 1.08996 * 109.47445 * 179.97438 * 15 13 12 28 28 H 1.09008 * 109.46868 * 299.99540 * 15 13 12 29 29 H 1.09003 * 109.47216 * 59.99171 * 15 13 12 30 30 H 1.08001 * 120.00386 * 0.25864 * 17 16 13 31 31 H 1.08000 * 119.99432 * 179.97438 * 19 18 17 32 32 H 1.08001 * 120.00136 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3223 -1.1197 -4.0080 9 1 1.8278 -2.5200 -4.0081 10 1 1.8267 -0.4201 -5.2205 11 1 3.8073 -1.1192 -4.0078 12 7 2.0197 -0.6925 1.1994 13 6 2.0826 0.2225 2.3469 14 1 1.2578 0.9330 2.2907 15 6 3.4112 0.9809 2.3223 16 6 1.9787 -0.5676 3.6259 17 6 1.5082 0.0386 4.7775 18 7 1.4227 -0.6527 5.9002 19 6 1.7861 -1.9230 5.9233 20 6 2.2555 -2.5293 4.7719 21 7 2.3421 -1.8377 3.6491 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7088 1.1612 -3.4844 26 1 1.4496 -1.4979 1.4101 27 1 3.4577 1.6602 3.1734 28 1 4.2361 0.2705 2.3785 29 1 3.4863 1.5524 1.3971 30 1 1.2114 1.0769 4.7586 31 1 1.7166 -2.4879 6.8412 32 1 2.5520 -3.5677 4.7907 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602870583.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:06 Heat of formation + Delta-G solvation = 48.070846 kcal Electronic energy + Delta-G solvation = -14779.289141 eV Core-core repulsion = 12354.031629 eV Total energy + Delta-G solvation = -2425.257512 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.99609 -36.74244 -34.13190 -33.26079 -31.40950 -29.57606 -27.03548 -25.16158 -24.70746 -24.21429 -21.11707 -19.70295 -17.35384 -17.04103 -16.57007 -15.53778 -14.83872 -14.69225 -14.39792 -13.83590 -13.02932 -12.90260 -12.49789 -11.91186 -11.64801 -11.43430 -11.40119 -11.16232 -10.98181 -10.87911 -10.66868 -10.49583 -10.08101 -9.86454 -9.18758 -8.96201 -8.85346 -8.32648 -7.19615 -5.95552 -3.98028 0.84752 1.25092 3.37385 3.40791 3.44817 3.79345 4.14418 4.32468 4.45058 4.56581 4.85394 5.13614 5.34233 5.36279 5.46870 5.54593 5.77081 5.85465 6.18777 6.38169 6.45737 6.68174 6.74262 6.84299 7.10844 7.31388 7.41007 7.76256 7.88579 7.95393 8.30798 8.59036 8.65469 9.09591 9.67126 11.11685 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.049828 B = 0.006406 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.802598 B = 4370.031365 C = 4521.862983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.209 3.791 3 H 0.036 0.964 4 C -0.492 4.492 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.665 5.665 13 C 0.133 3.867 14 H 0.056 0.944 15 C -0.130 4.130 16 C 0.095 3.905 17 C 0.047 3.953 18 N -0.440 5.440 19 C 0.029 3.971 20 C 0.051 3.949 21 N -0.413 5.413 22 H 0.003 0.997 23 H 0.090 0.910 24 H 0.027 0.973 25 H 0.260 0.740 26 H 0.333 0.667 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.166 0.834 31 H 0.165 0.835 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.067 -2.368 13.546 13.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.102 3.898 3 H 0.054 0.946 4 C -0.531 4.531 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.296 5.296 13 C 0.021 3.979 14 H 0.074 0.926 15 C -0.188 4.188 16 C -0.046 4.046 17 C -0.114 4.114 18 N -0.155 5.155 19 C -0.131 4.131 20 C -0.109 4.109 21 N -0.128 5.128 22 H 0.022 0.978 23 H 0.109 0.891 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.151 0.849 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.184 0.816 31 H 0.182 0.818 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.657 -2.175 13.235 13.514 hybrid contribution -0.742 -0.408 -0.578 1.025 sum 0.915 -2.583 12.656 12.950 Atomic orbital electron populations 1.22466 1.00935 0.99170 1.00407 1.19263 0.89378 0.94562 0.86618 0.94605 1.21109 1.30072 1.12398 0.89479 0.91914 1.24939 0.95379 0.95229 0.98996 1.69867 1.37404 1.23264 1.23394 0.86565 0.79185 0.79599 0.82038 1.20424 1.21525 1.20299 1.60792 1.58627 1.08183 1.02042 1.20421 0.98124 0.93159 0.86173 0.92608 1.21755 0.96413 0.99200 1.01475 1.22721 0.93124 0.91559 0.97231 1.23569 0.97590 1.01346 0.88895 1.68410 1.11928 1.07383 1.27763 1.23683 0.97366 0.92180 0.99861 1.23863 0.96364 1.01394 0.89274 1.68398 1.10631 1.06652 1.27127 0.97815 0.89147 0.95426 0.93067 0.84910 0.93642 0.92119 0.91048 0.81638 0.81822 0.81597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.92 37.16 0.33 -3.78 16 2 C 0.21 5.22 2.39 -68.86 -0.16 5.06 16 3 H 0.04 0.96 7.11 -51.93 -0.37 0.59 16 4 C -0.49 -13.66 8.84 -34.44 -0.30 -13.97 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.66 11.32 55.43 0.63 -25.04 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.67 -14.34 5.79 -102.17 -0.59 -14.93 16 13 C 0.13 2.36 2.69 -68.86 -0.19 2.18 16 14 H 0.06 0.99 7.09 -51.93 -0.37 0.62 16 15 C -0.13 -2.15 9.38 37.16 0.35 -1.81 16 16 C 0.09 1.50 5.70 -82.41 -0.47 1.03 16 17 C 0.05 0.65 10.90 -17.37 -0.19 0.46 16 18 N -0.44 -5.99 10.50 -13.06 -0.14 -6.13 16 19 C 0.03 0.33 11.22 -17.38 -0.20 0.13 16 20 C 0.05 0.63 11.22 -17.38 -0.20 0.44 16 21 N -0.41 -6.66 9.46 -9.29 -0.09 -6.75 16 22 H 0.00 0.06 7.43 -51.93 -0.39 -0.32 16 23 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 24 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.33 7.21 7.60 -39.29 -0.30 6.91 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 29 H 0.07 1.28 7.43 -51.93 -0.39 0.90 16 30 H 0.17 1.90 8.06 -52.49 -0.42 1.48 16 31 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 271.94 15.07 4.10 4.10 Total: -1.00 -30.20 271.94 -6.43 -36.64 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.20 Total: 4.30 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -1.12 Total: -8.82 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.19 Total: -52.84 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.20 -6.43 -36.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870583.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.707 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds