Wall clock time and date at job start Sun Mar 29 2020 22:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47513 * 2 1 4 4 C 1.50704 * 109.46874 * 239.99741 * 2 1 3 5 5 H 1.07996 * 120.00236 * 240.00094 * 4 2 1 6 6 C 1.37886 * 119.99703 * 60.00510 * 4 2 1 7 7 N 1.31508 * 119.99830 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99707 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47172 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46928 * 120.00056 * 8 6 4 11 11 H 1.48496 * 109.46876 * 239.99727 * 8 6 4 12 12 N 1.46895 * 109.46733 * 120.00300 * 2 1 3 13 13 C 1.46902 * 111.00148 * 274.99734 * 12 2 1 14 14 C 1.50701 * 109.47489 * 180.02562 * 13 12 2 15 15 C 1.38335 * 120.45127 * 260.00250 * 14 13 12 16 16 C 1.38839 * 118.50819 * 180.02562 * 15 14 13 17 17 C 1.38063 * 119.32377 * 0.27637 * 16 15 14 18 18 N 1.31941 * 120.85639 * 359.39934 * 17 16 15 19 19 C 1.32426 * 121.62036 * 0.63803 * 18 17 16 20 20 N 1.39011 * 119.70103 * 179.67631 * 19 18 17 21 21 H 1.08998 * 109.47513 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46840 * 300.00533 * 1 2 3 23 23 H 1.09000 * 109.46854 * 59.99801 * 1 2 3 24 24 H 0.96999 * 119.99736 * 179.97438 * 7 6 4 25 25 H 1.00905 * 111.00382 * 38.95274 * 12 2 1 26 26 H 1.08994 * 109.47134 * 60.00152 * 13 12 2 27 27 H 1.09008 * 109.46837 * 300.00132 * 13 12 2 28 28 H 1.08001 * 120.74608 * 359.97438 * 15 14 13 29 29 H 1.08002 * 120.33445 * 179.97438 * 16 15 14 30 30 H 1.08003 * 119.56691 * 179.72213 * 17 16 15 31 31 H 0.96997 * 119.99370 * 179.97438 * 20 19 18 32 32 H 0.96994 * 120.00533 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 3.1472 -2.2864 -3.6038 10 1 1.1677 -1.5865 -4.8165 11 1 3.1472 -0.1858 -4.8161 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2225 2.3469 14 6 2.5884 -0.5217 3.5558 15 6 1.7057 -0.9789 4.5178 16 6 2.2157 -1.6592 5.6153 17 6 3.5789 -1.8531 5.7170 18 7 4.3969 -1.4113 4.7808 19 6 3.9493 -0.7577 3.7196 20 7 4.8476 -0.3039 2.7607 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.7088 1.1613 -3.4844 25 1 1.4494 -1.4980 1.4100 26 1 1.0871 0.6162 2.5525 27 1 2.7589 1.0461 2.1182 28 1 0.6437 -0.8097 4.4177 29 1 1.5533 -2.0286 6.3842 30 1 3.9803 -2.3779 6.5714 31 1 4.5243 0.1749 1.9815 32 1 5.7975 -0.4660 2.8707 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602870646.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:28 Heat of formation + Delta-G solvation = 32.381517 kcal Electronic energy + Delta-G solvation = -14671.385560 eV Core-core repulsion = 12245.447708 eV Total energy + Delta-G solvation = -2425.937852 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.97914 -36.18399 -34.37755 -33.18014 -31.65327 -29.48309 -27.89760 -25.23115 -24.60484 -22.64017 -21.30472 -20.21616 -17.33817 -17.09672 -16.41488 -15.11369 -14.81397 -14.50169 -14.39883 -14.02720 -13.38251 -13.00512 -12.92974 -12.61554 -11.94917 -11.70155 -11.21575 -10.93452 -10.79993 -10.56308 -10.45465 -10.17711 -9.96870 -9.34565 -9.22897 -8.99472 -8.39546 -7.50089 -7.25802 -6.01382 -4.04802 1.52785 1.75342 3.29712 3.37805 3.43265 3.89361 4.18802 4.42921 4.88491 5.07446 5.27483 5.30374 5.32516 5.57233 5.70385 5.82251 6.04398 6.21875 6.36619 6.59776 6.65628 6.81586 6.88708 7.06129 7.30773 7.63201 7.71302 7.79240 7.85978 8.23092 8.48461 8.55285 8.57591 9.03245 9.60988 11.05478 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044047 B = 0.006457 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.535495 B = 4335.409082 C = 4671.716682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.210 3.790 3 H 0.033 0.967 4 C -0.494 4.494 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.678 5.678 13 C 0.106 3.894 14 C -0.189 4.189 15 C -0.035 4.035 16 C -0.243 4.243 17 C 0.139 3.861 18 N -0.556 5.556 19 C 0.425 3.575 20 N -0.840 5.840 21 H 0.028 0.972 22 H 0.005 0.995 23 H 0.089 0.911 24 H 0.259 0.741 25 H 0.327 0.673 26 H 0.030 0.970 27 H 0.068 0.932 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.148 0.852 31 H 0.418 0.582 32 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.297 -1.868 12.595 12.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.102 3.898 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.308 5.308 13 C -0.024 4.024 14 C -0.197 4.197 15 C -0.061 4.061 16 C -0.266 4.266 17 C -0.019 4.019 18 N -0.274 5.274 19 C 0.186 3.814 20 N -0.382 5.382 21 H 0.047 0.953 22 H 0.024 0.976 23 H 0.107 0.893 24 H 0.069 0.931 25 H 0.144 0.856 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.165 0.835 31 H 0.251 0.749 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.765 -1.792 12.335 13.020 hybrid contribution -1.461 -0.095 -0.993 1.769 sum 2.305 -1.887 11.341 11.726 Atomic orbital electron populations 1.22432 1.00715 0.99234 1.00492 1.19211 0.89699 0.94370 0.86491 0.94884 1.21187 1.30175 1.12410 0.89517 0.91902 1.24953 0.95330 0.95199 0.99060 1.69888 1.37327 1.23233 1.23263 0.86460 0.78524 0.79660 0.82866 1.19768 1.21216 1.21148 1.60907 1.58275 1.08826 1.02803 1.20646 0.98518 0.94761 0.88513 1.20288 0.92534 1.07325 0.99529 1.21237 0.99376 0.93310 0.92226 1.21677 0.96692 1.07210 1.01054 1.22242 0.89898 0.94475 0.95277 1.67173 1.40079 1.16564 1.03605 1.18142 0.87490 0.88533 0.87267 1.42362 1.08168 1.63183 1.24535 0.95324 0.97627 0.89256 0.93117 0.85597 0.95237 0.91353 0.85566 0.85745 0.83464 0.74924 0.77478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 8.94 37.16 0.33 -3.66 16 2 C 0.21 5.09 2.57 -68.86 -0.18 4.91 16 3 H 0.03 0.87 7.80 -51.93 -0.40 0.47 16 4 C -0.49 -13.37 8.84 -34.44 -0.30 -13.67 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.06 1.50 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.27 11.32 55.43 0.63 -24.65 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.68 -13.85 6.22 -109.22 -0.68 -14.53 16 13 C 0.11 1.85 4.92 -4.97 -0.02 1.82 16 14 C -0.19 -3.04 5.43 -104.27 -0.57 -3.60 16 15 C -0.04 -0.49 9.81 -39.32 -0.39 -0.88 16 16 C -0.24 -3.06 10.10 -39.42 -0.40 -3.46 16 17 C 0.14 1.84 11.17 -17.57 -0.20 1.64 16 18 N -0.56 -8.77 10.39 -12.44 -0.13 -8.90 16 19 C 0.42 6.91 7.73 -155.01 -1.20 5.71 16 20 N -0.84 -12.39 8.99 31.13 0.28 -12.11 16 21 H 0.03 0.65 8.13 -51.93 -0.42 0.22 16 22 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 23 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.33 6.65 8.46 -39.29 -0.33 6.32 16 26 H 0.03 0.51 7.33 -51.93 -0.38 0.13 16 27 H 0.07 1.19 7.02 -51.92 -0.36 0.83 16 28 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 30 H 0.15 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.42 6.40 7.04 -40.82 -0.29 6.12 16 32 H 0.40 5.10 8.95 -40.82 -0.37 4.73 16 LS Contribution 271.16 15.07 4.09 4.09 Total: -1.00 -28.94 271.16 -7.92 -36.87 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -4.07 Total: 12.75 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -3.01 Total: -9.78 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: 0.10 Total: -60.19 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.94 -7.92 -36.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870646.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.247 kcal (2) G-P(sol) polarization free energy of solvation -28.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds